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MS006483 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006483
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold404:176150..176518
RNA-Seq ExpressionMS006483
SyntenyMS006483
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PKI39106.1 hypothetical protein CRG98_040530 [Punica granatum]3.0e-2040.15Show/hide
Query:  ITWTPRPINCWKLNTDGSSQGNPGMAGTGGIIRNSEGNWIKGFQQNIG-STAT----------LELAWELGCRSLEIETDSIVACNMILNHSRPNTIIQP
        + W   P    K+NTDG+S+GNPG+AG GG+I   +G WI GF  N+G +T+T          LELAW+ G R + +E DS V   ++ N    N+ + P
Subjt:  ITWTPRPINCWKLNTDGSSQGNPGMAGTGGIIRNSEGNWIKGFQQNIG-STAT----------LELAWELGCRSLEIETDSIVACNMILNHSRPNTIIQP

Query:  LLRKITQLMDQDWNVSIKHIYRETNYYADWLA
        L+  I  ++ +DW+V + H Y+E+N  ADW+A
Subjt:  LLRKITQLMDQDWNVSIKHIYRETNYYADWLA

PKI42247.1 hypothetical protein CRG98_037363 [Punica granatum]1.7e-2044.03Show/hide
Query:  VNITWTPRPINCWKLNTDGSSQGNPGMAGTGGIIRNSEGNWIKGFQQNIG-STAT----------LELAWELGCRSLEIETDSIVACNMILNHSRPNTII
        ++I W     +  KLNTDG  +G+ G+ G GGI+RNS G WI GF Q++G ST T          LELAW   CR L IE DS+V   ++L     +   
Subjt:  VNITWTPRPINCWKLNTDGSSQGNPGMAGTGGIIRNSEGNWIKGFQQNIG-STAT----------LELAWELGCRSLEIETDSIVACNMILNHSRPNTII

Query:  QPLLRKITQLMDQDWNVSIKHIYRETNYYADWLA
        QPL R I  L+ +DW V I+H Y E N  ADWL+
Subjt:  QPLLRKITQLMDQDWNVSIKHIYRETNYYADWLA

XP_016178430.1 uncharacterized protein LOC107620837 [Arachis ipaensis]1.5e-1940.15Show/hide
Query:  ITWTPRPINCWKLNTDGSSQGNPGMAGTGGIIRNSEGNWIKGFQQNIGSTAT-----------LELAWELGCRSLEIETDSIVACNMILNHSRPNTIIQP
        I W P P    K+NTDG+++ NPG AG GG+IRNS+G+W+  F +N+G  +            LE+AW LG R ++IE DS    N +  + +       
Subjt:  ITWTPRPINCWKLNTDGSSQGNPGMAGTGGIIRNSEGNWIKGFQQNIGSTAT-----------LELAWELGCRSLEIETDSIVACNMILNHSRPNTIIQP

Query:  LLRKITQLMDQDWNVSIKHIYRETNYYADWLA
        L  +I +LM+++W +++ H YRETN  ADWLA
Subjt:  LLRKITQLMDQDWNVSIKHIYRETNYYADWLA

XP_016200339.1 uncharacterized protein LOC107641359 [Arachis ipaensis]3.3e-1939.39Show/hide
Query:  ITWTPRPINCWKLNTDGSSQGNPGMAGTGGIIRNSEGNWIKGFQQNIGSTAT-----------LELAWELGCRSLEIETDSIVACNMILNHSRPNTIIQP
        I W P P    K+NTDGSS GNP  AG GG+IR+  G W+ GF  NIG+ +            L + WELG R + +E DS V  ++I N S+      P
Subjt:  ITWTPRPINCWKLNTDGSSQGNPGMAGTGGIIRNSEGNWIKGFQQNIGSTAT-----------LELAWELGCRSLEIETDSIVACNMILNHSRPNTIIQP

Query:  LLRKITQLMDQDWNVSIKHIYRETNYYADWLA
        ++R I  L++++W +  +H +R+ N  AD+LA
Subjt:  LLRKITQLMDQDWNVSIKHIYRETNYYADWLA

XP_031376896.1 uncharacterized protein LOC116192475 [Punica granatum]3.5e-2140.91Show/hide
Query:  ITWTPRPINCWKLNTDGSSQGNPGMAGTGGIIRNSEGNWIKGFQQNIG-STAT----------LELAWELGCRSLEIETDSIVACNMILNHSRPNTIIQP
        I W   P    K+NTDG+S+GNPG+AG GG++RN +G+WI GF  N+G +T+T          L+LAW+ G R + +E DS V   ++ + S  N  ++P
Subjt:  ITWTPRPINCWKLNTDGSSQGNPGMAGTGGIIRNSEGNWIKGFQQNIG-STAT----------LELAWELGCRSLEIETDSIVACNMILNHSRPNTIIQP

Query:  LLRKITQLMDQDWNVSIKHIYRETNYYADWLA
        L+  I+ ++ +DW++ + H YRE N  ADW+A
Subjt:  LLRKITQLMDQDWNVSIKHIYRETNYYADWLA

TrEMBL top hitse value%identityAlignment
A0A2N9HDS6 Uncharacterized protein3.8e-2145.86Show/hide
Query:  NITWTPRPINCWKLNTDGSSQGNPGMAGTGGIIRNSEGNWIKGFQQNIGSTAT-----------LELAWELGCRSLEIETDSIVACNMILNHSRPNTIIQ
        +I W P P+  +KLNTDGSS GNPGMAG GG+IRN  G+W  GF + IG T +           LELA ELG  +LEIE DS+VA  ++ + + PN  + 
Subjt:  NITWTPRPINCWKLNTDGSSQGNPGMAGTGGIIRNSEGNWIKGFQQNIGSTAT-----------LELAWELGCRSLEIETDSIVACNMILNHSRPNTIIQ

Query:  PLLRKITQLMDQDWNVSIKHIYRETNYYADWLA
         ++     LM++    S+KHI+RE N  AD LA
Subjt:  PLLRKITQLMDQDWNVSIKHIYRETNYYADWLA

A0A2N9HQ75 RNase H domain-containing protein3.8e-2145.86Show/hide
Query:  NITWTPRPINCWKLNTDGSSQGNPGMAGTGGIIRNSEGNWIKGFQQNIGSTAT-----------LELAWELGCRSLEIETDSIVACNMILNHSRPNTIIQ
        +I W P P+  +KLNTDGSS GNPGMAG GG+IRN  G+W  GF + IG T +           LELA ELG  +LEIE DS+VA  ++ + + PN  + 
Subjt:  NITWTPRPINCWKLNTDGSSQGNPGMAGTGGIIRNSEGNWIKGFQQNIGSTAT-----------LELAWELGCRSLEIETDSIVACNMILNHSRPNTIIQ

Query:  PLLRKITQLMDQDWNVSIKHIYRETNYYADWLA
         ++     LM++    S+KHI+RE N  AD LA
Subjt:  PLLRKITQLMDQDWNVSIKHIYRETNYYADWLA

A0A2N9I0B2 RNase H domain-containing protein3.8e-2145.86Show/hide
Query:  NITWTPRPINCWKLNTDGSSQGNPGMAGTGGIIRNSEGNWIKGFQQNIGSTAT-----------LELAWELGCRSLEIETDSIVACNMILNHSRPNTIIQ
        +I W P P+  +KLNTDGSS GNPGMAG GG+IRN  G+W  GF + IG T +           LELA ELG  +LEIE DS+VA  ++ + + PN  + 
Subjt:  NITWTPRPINCWKLNTDGSSQGNPGMAGTGGIIRNSEGNWIKGFQQNIGSTAT-----------LELAWELGCRSLEIETDSIVACNMILNHSRPNTIIQ

Query:  PLLRKITQLMDQDWNVSIKHIYRETNYYADWLA
         ++     LM++    S+KHI+RE N  AD LA
Subjt:  PLLRKITQLMDQDWNVSIKHIYRETNYYADWLA

A0A2N9J078 Uncharacterized protein3.8e-2145.86Show/hide
Query:  NITWTPRPINCWKLNTDGSSQGNPGMAGTGGIIRNSEGNWIKGFQQNIGSTAT-----------LELAWELGCRSLEIETDSIVACNMILNHSRPNTIIQ
        +I W P P+  +KLNTDGSS GNPGMAG GG+IRN  G+W  GF + IG T +           LELA ELG  +LEIE DS+VA  ++ + + PN  + 
Subjt:  NITWTPRPINCWKLNTDGSSQGNPGMAGTGGIIRNSEGNWIKGFQQNIGSTAT-----------LELAWELGCRSLEIETDSIVACNMILNHSRPNTIIQ

Query:  PLLRKITQLMDQDWNVSIKHIYRETNYYADWLA
         ++     LM++    S+KHI+RE N  AD LA
Subjt:  PLLRKITQLMDQDWNVSIKHIYRETNYYADWLA

A0A6P8C599 uncharacterized protein LOC1161924751.7e-2140.91Show/hide
Query:  ITWTPRPINCWKLNTDGSSQGNPGMAGTGGIIRNSEGNWIKGFQQNIG-STAT----------LELAWELGCRSLEIETDSIVACNMILNHSRPNTIIQP
        I W   P    K+NTDG+S+GNPG+AG GG++RN +G+WI GF  N+G +T+T          L+LAW+ G R + +E DS V   ++ + S  N  ++P
Subjt:  ITWTPRPINCWKLNTDGSSQGNPGMAGTGGIIRNSEGNWIKGFQQNIG-STAT----------LELAWELGCRSLEIETDSIVACNMILNHSRPNTIIQP

Query:  LLRKITQLMDQDWNVSIKHIYRETNYYADWLA
        L+  I+ ++ +DW++ + H YRE N  ADW+A
Subjt:  LLRKITQLMDQDWNVSIKHIYRETNYYADWLA

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657503.9e-1535.61Show/hide
Query:  ITWTPRPINCWKLNTDGSSQGNPGMAGTGGIIRNSEGNWIKGFQQNIGSTAT-----------LELAWELGCRSLEIETDSIVACNMILNHSRPNTIIQP
        I W    +   K+NTDG+S+GNPG+A  GG++R+  G W  GF  NIG  +            L  AWE     +E+E DS V    +      +  +  
Subjt:  ITWTPRPINCWKLNTDGSSQGNPGMAGTGGIIRNSEGNWIKGFQQNIGSTAT-----------LELAWELGCRSLEIETDSIVACNMILNHSRPNTIIQP

Query:  LLRKITQLMDQDWNVSIKHIYRETNYYADWLA
        L+R     + +DW V I H+YRE N  AD LA
Subjt:  LLRKITQLMDQDWNVSIKHIYRETNYYADWLA

Arabidopsis top hitse value%identityAlignment
AT3G01410.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein5.2e-0727.48Show/hide
Query:  ITWTP-RPINCWKLNTDGSSQGNPGMAGTGGIIRNSEGNWIKGFQQNIGSTAT-----------LELAWELGCRSLEIETDSIVACNMILNHSRPN-TII
        +T TP R  +   +  DG+S+GNPG AG G ++R S+ + +   ++ +G+              L  A + G +++ +  DS++ C  +    + N   +
Subjt:  ITWTP-RPINCWKLNTDGSSQGNPGMAGTGGIIRNSEGNWIKGFQQNIGSTAT-----------LELAWELGCRSLEIETDSIVACNMILNHSRPN-TII

Query:  QPLLRKITQLMDQDWNVSIKHIYRETNYYAD
          L ++  +LM+      IKHI RE N  AD
Subjt:  QPLLRKITQLMDQDWNVSIKHIYRETNYYAD

AT3G01410.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein5.2e-0727.48Show/hide
Query:  ITWTP-RPINCWKLNTDGSSQGNPGMAGTGGIIRNSEGNWIKGFQQNIGSTAT-----------LELAWELGCRSLEIETDSIVACNMILNHSRPN-TII
        +T TP R  +   +  DG+S+GNPG AG G ++R S+ + +   ++ +G+              L  A + G +++ +  DS++ C  +    + N   +
Subjt:  ITWTP-RPINCWKLNTDGSSQGNPGMAGTGGIIRNSEGNWIKGFQQNIGSTAT-----------LELAWELGCRSLEIETDSIVACNMILNHSRPN-TII

Query:  QPLLRKITQLMDQDWNVSIKHIYRETNYYAD
          L ++  +LM+      IKHI RE N  AD
Subjt:  QPLLRKITQLMDQDWNVSIKHIYRETNYYAD

AT5G42905.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.5e-1131.3Show/hide
Query:  ITWTPRPINCWKLNTDGSSQGNPGMAGTGGIIRNSEGNWIKGFQQNIGSTAT-----------LELAWELGCRSLEIETDSIVACNMILNHSRPNTIIQP
        I W    +   K+NTDG+S+GNPG+A  GG++R+ EG W  GF  NIG  +            L  AWE     +E+E DS      +      +  +  
Subjt:  ITWTPRPINCWKLNTDGSSQGNPGMAGTGGIIRNSEGNWIKGFQQNIGSTAT-----------LELAWELGCRSLEIETDSIVACNMILNHSRPNTIIQP

Query:  LLRKITQLMDQDWNV
        L+R     + +DW +
Subjt:  LLRKITQLMDQDWNV

AT5G61090.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.6e-0827.69Show/hide
Query:  WTPRPINCWKLNTDGSSQGNPGMAGTGGIIRNSEGNWIKGF---QQNIGSTAT--------LELAWELGCRSLEIETDSIVACNMILNHSRPNTIIQPLL
        WTP  +   KLN  G+S     +  + GI+R+  G W+ G+    ++I             L+  W+ G R + +ET S    N +   S      + LL
Subjt:  WTPRPINCWKLNTDGSSQGNPGMAGTGGIIRNSEGNWIKGF---QQNIGSTAT--------LELAWELGCRSLEIETDSIVACNMILNHSRPNTIIQPLL

Query:  RKITQLMDQDWNVSIKHIYRETNYYADWLA
             ++ ++W   I HI +E N  A+WLA
Subjt:  RKITQLMDQDWNVSIKHIYRETNYYADWLA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTCAATATCACATGGACTCCCCGTCCAATTAATTGTTGGAAATTGAATACAGATGGATCTTCACAAGGTAATCCGGGTATGGCAGGGACAGGAGGGATCATAAGGAATTC
AGAGGGGAATTGGATTAAAGGTTTTCAGCAAAATATTGGAAGCACGGCGACTCTGGAGTTGGCTTGGGAGCTAGGGTGCCGCTCTTTGGAAATAGAAACAGATTCTATTG
TAGCTTGCAATATGATTCTGAACCACTCTCGGCCTAATACCATCATCCAACCATTGTTGAGGAAGATCACACAACTGATGGATCAGGATTGGAATGTTTCGATTAAGCAT
ATCTATAGAGAGACCAATTACTATGCGGACTGGTTAGCT
mRNA sequenceShow/hide mRNA sequence
GTCAATATCACATGGACTCCCCGTCCAATTAATTGTTGGAAATTGAATACAGATGGATCTTCACAAGGTAATCCGGGTATGGCAGGGACAGGAGGGATCATAAGGAATTC
AGAGGGGAATTGGATTAAAGGTTTTCAGCAAAATATTGGAAGCACGGCGACTCTGGAGTTGGCTTGGGAGCTAGGGTGCCGCTCTTTGGAAATAGAAACAGATTCTATTG
TAGCTTGCAATATGATTCTGAACCACTCTCGGCCTAATACCATCATCCAACCATTGTTGAGGAAGATCACACAACTGATGGATCAGGATTGGAATGTTTCGATTAAGCAT
ATCTATAGAGAGACCAATTACTATGCGGACTGGTTAGCT
Protein sequenceShow/hide protein sequence
VNITWTPRPINCWKLNTDGSSQGNPGMAGTGGIIRNSEGNWIKGFQQNIGSTATLELAWELGCRSLEIETDSIVACNMILNHSRPNTIIQPLLRKITQLMDQDWNVSIKH
IYRETNYYADWLA