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MS006500 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006500
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzf-RVT domain-containing protein
Genome locationscaffold404:370452..370679
RNA-Seq ExpressionMS006500
SyntenyMS006500
Gene Ontology termsGO:0006796 - phosphate-containing compound metabolic process (biological process)
GO:0034645 - cellular macromolecule biosynthetic process (biological process)
GO:0034654 - nucleobase-containing compound biosynthetic process (biological process)
GO:0044267 - cellular protein metabolic process (biological process)
GO:0044281 - small molecule metabolic process (biological process)
GO:0090304 - nucleic acid metabolic process (biological process)
GO:1901566 - organonitrogen compound biosynthetic process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0016772 - transferase activity, transferring phosphorus-containing groups (molecular function)
GO:0016787 - hydrolase activity (molecular function)
GO:0097159 - organic cyclic compound binding (molecular function)
GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046762.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.1e-0442.31Show/hide
Query:  PKRVKRFLWIMIQSRLNTSDKLRKRMPSFFISPQWWCILCKADAESQSRTFL
        P ++K F+W +IQ ++NT + ++ RMP+  + P  WC+LCK D+ES +  FL
Subjt:  PKRVKRFLWIMIQSRLNTSDKLRKRMPSFFISPQWWCILCKADAESQSRTFL
KAA0050814.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.4e-0441.18Show/hide
Query:  PKRVKRFLWIMIQSRLNTSDKLRKRMPSFFISPQWWCILCKADAESQSRTF
        P ++K FLW ++Q +LNT + +++RMP+  + P  WC+LCK D+E+ +  F
Subjt:  PKRVKRFLWIMIQSRLNTSDKLRKRMPSFFISPQWWCILCKADAESQSRTF
KAA0058105.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.8e-0539.29Show/hide
Query:  ETKSPKRVKRFLWIMIQSRLNTSDKLRKRMPSFFISPQWWCILCKADAESQSRTFL
        +T  P ++K F+W ++Q +LNT + +++RMP+  + P  WC+LCK D+E+ +  FL
Subjt:  ETKSPKRVKRFLWIMIQSRLNTSDKLRKRMPSFFISPQWWCILCKADAESQSRTFL
ONI36148.1 hypothetical protein PRUPE_1G572100 [Prunus persica]8.2e-0542.86Show/hide
Query:  ETKSPKRVKRFLWIMIQSRLNTSDKLRKRMPSFFISPQWWCILCKADAESQSRTFL
        + KSP +VK F+W++   ++NTSD ++++ P  ++SPQ WC+LCK   ES    FL
Subjt:  ETKSPKRVKRFLWIMIQSRLNTSDKLRKRMPSFFISPQWWCILCKADAESQSRTFL
VVA21329.1 Hypothetical predicted protein [Prunus dulcis]8.2e-0542.86Show/hide
Query:  ETKSPKRVKRFLWIMIQSRLNTSDKLRKRMPSFFISPQWWCILCKADAESQSRTFL
        + KSP +VK F+W++   ++NTSD ++++ P  ++SPQ WC+LCK   ES    FL
Subjt:  ETKSPKRVKRFLWIMIQSRLNTSDKLRKRMPSFFISPQWWCILCKADAESQSRTFL
TrEMBL top hitse value%identityAlignment
A0A251RJG1 zf-RVT domain-containing protein4.0e-0542.86Show/hide
Query:  ETKSPKRVKRFLWIMIQSRLNTSDKLRKRMPSFFISPQWWCILCKADAESQSRTFL
        + KSP +VK F+W++   ++NTSD ++++ P  ++SPQ WC+LCK   ES    FL
Subjt:  ETKSPKRVKRFLWIMIQSRLNTSDKLRKRMPSFFISPQWWCILCKADAESQSRTFL
A0A5A7TTK1 LINE-1 retrotransposable element ORF2 protein5.2e-0542.31Show/hide
Query:  PKRVKRFLWIMIQSRLNTSDKLRKRMPSFFISPQWWCILCKADAESQSRTFL
        P ++K F+W +IQ ++NT + ++ RMP+  + P  WC+LCK D+ES +  FL
Subjt:  PKRVKRFLWIMIQSRLNTSDKLRKRMPSFFISPQWWCILCKADAESQSRTFL
A0A5A7UWW1 LINE-1 retrotransposable element ORF2 protein2.3e-0539.29Show/hide
Query:  ETKSPKRVKRFLWIMIQSRLNTSDKLRKRMPSFFISPQWWCILCKADAESQSRTFL
        +T  P ++K F+W ++Q +LNT + +++RMP+  + P  WC+LCK D+E+ +  FL
Subjt:  ETKSPKRVKRFLWIMIQSRLNTSDKLRKRMPSFFISPQWWCILCKADAESQSRTFL
A0A5E4F2L4 zf-RVT domain-containing protein4.0e-0542.86Show/hide
Query:  ETKSPKRVKRFLWIMIQSRLNTSDKLRKRMPSFFISPQWWCILCKADAESQSRTFL
        + KSP +VK F+W++   ++NTSD ++++ P  ++SPQ WC+LCK   ES    FL
Subjt:  ETKSPKRVKRFLWIMIQSRLNTSDKLRKRMPSFFISPQWWCILCKADAESQSRTFL
M5XJT6 zf-RVT domain-containing protein (Fragment)4.0e-0542.86Show/hide
Query:  ETKSPKRVKRFLWIMIQSRLNTSDKLRKRMPSFFISPQWWCILCKADAESQSRTFL
        + KSP +VK F+W++   ++NTSD ++++ P  ++SPQ WC+LCK   ES    FL
Subjt:  ETKSPKRVKRFLWIMIQSRLNTSDKLRKRMPSFFISPQWWCILCKADAESQSRTFL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAAAAATCAAATTTGATGCGTCAAAGAGGTACGAAAAAGGGAGAGAAACTTAAGAAGGAAACGAAGAGCCCCAAGAGAGTGAAACGTTTTCTTTGGATCATGATCCAAAG
CAGGCTTAACACTAGTGATAAGCTTCGGAAGAGAATGCCAAGTTTTTTCATATCCCCTCAATGGTGGTGCATCTTATGCAAAGCTGATGCCGAAAGTCAATCTCGCACTT
TCTTACTC
mRNA sequenceShow/hide mRNA sequence
AAAAAATCAAATTTGATGCGTCAAAGAGGTACGAAAAAGGGAGAGAAACTTAAGAAGGAAACGAAGAGCCCCAAGAGAGTGAAACGTTTTCTTTGGATCATGATCCAAAG
CAGGCTTAACACTAGTGATAAGCTTCGGAAGAGAATGCCAAGTTTTTTCATATCCCCTCAATGGTGGTGCATCTTATGCAAAGCTGATGCCGAAAGTCAATCTCGCACTT
TCTTACTC
Protein sequenceShow/hide protein sequence
KKSNLMRQRGTKKGEKLKKETKSPKRVKRFLWIMIQSRLNTSDKLRKRMPSFFISPQWWCILCKADAESQSRTFLL