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MS006505 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006505
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold404:453177..453446
RNA-Seq ExpressionMS006505
SyntenyMS006505
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]2.3e-3888.89Show/hide
Query:  WSAPPTNCWKLNADASWSEKREVGGLGWILRDCRGEIVLAGNCKIREKKEIKALELMAIIRGLQSINMQSRSPIYLESDSVEVTRLMKED
        WSAPPTNCWKLN DASWSE+REVGG+GWIL DCRGEIVLAGNCKIREKKEI ALELM IIRGLQ INMQSRSPIYLESDSVEV RLMK++
Subjt:  WSAPPTNCWKLNADASWSEKREVGGLGWILRDCRGEIVLAGNCKIREKKEIKALELMAIIRGLQSINMQSRSPIYLESDSVEVTRLMKED

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]8.8e-1445.98Show/hide
Query:  WSAPPTNCWKLNADASWSEKREVGGLGWILRDCRGEIVLAGNCKIREKKEIKALELMAIIRGLQSINMQSRSPIYLESDSVEVTRLM
        W  P +N WKLN +A+W      GG+GWILRD +GE++ A    IR ++ I  LE+MAI  GL++I  +   PI+LESDS+E   L+
Subjt:  WSAPPTNCWKLNADASWSEKREVGGLGWILRDCRGEIVLAGNCKIREKKEIKALELMAIIRGLQSINMQSRSPIYLESDSVEVTRLM

XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]8.8e-1445.98Show/hide
Query:  WSAPPTNCWKLNADASWSEKREVGGLGWILRDCRGEIVLAGNCKIREKKEIKALELMAIIRGLQSINMQSRSPIYLESDSVEVTRLM
        W  P +N WKLN DA+W       G+GWILRD +GE++  G   IR ++ I  LE+MAI  GL++I  +   PI+LESDS+E   L+
Subjt:  WSAPPTNCWKLNADASWSEKREVGGLGWILRDCRGEIVLAGNCKIREKKEIKALELMAIIRGLQSINMQSRSPIYLESDSVEVTRLM

XP_022154991.1 uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]8.8e-1445.98Show/hide
Query:  WSAPPTNCWKLNADASWSEKREVGGLGWILRDCRGEIVLAGNCKIREKKEIKALELMAIIRGLQSINMQSRSPIYLESDSVEVTRLM
        W  P +N WKLN DA+W       G+GWILRD +GE++  G   IR ++ I  LE+MAI  GL++I  +   PI+LESDS+E   L+
Subjt:  WSAPPTNCWKLNADASWSEKREVGGLGWILRDCRGEIVLAGNCKIREKKEIKALELMAIIRGLQSINMQSRSPIYLESDSVEVTRLM

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]2.0e-1345.45Show/hide
Query:  WSAPPTNCWKLNADASWSEKREVGGLGWILRDCRGEIVLAGNCKIREKKEIKALELMAIIRGLQSI-NMQSRSPIYLESDSVEVTRLM
        W  PP + W LNADASWS+    GG+GWI+R   G+IVLAGN  +     +K LE  AI+ GL+++ N+    P+++E+DS EV  L+
Subjt:  WSAPPTNCWKLNADASWSEKREVGGLGWILRDCRGEIVLAGNCKIREKKEIKALELMAIIRGLQSI-NMQSRSPIYLESDSVEVTRLM

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134124.3e-1445.98Show/hide
Query:  WSAPPTNCWKLNADASWSEKREVGGLGWILRDCRGEIVLAGNCKIREKKEIKALELMAIIRGLQSINMQSRSPIYLESDSVEVTRLM
        W  P +N WKLN +A+W      GG+GWILRD +GE++ A    IR ++ I  LE+MAI  GL++I  +   PI+LESDS+E   L+
Subjt:  WSAPPTNCWKLNADASWSEKREVGGLGWILRDCRGEIVLAGNCKIREKKEIKALELMAIIRGLQSINMQSRSPIYLESDSVEVTRLM

A0A6J1CQG0 uncharacterized protein LOC1110132161.1e-3888.89Show/hide
Query:  WSAPPTNCWKLNADASWSEKREVGGLGWILRDCRGEIVLAGNCKIREKKEIKALELMAIIRGLQSINMQSRSPIYLESDSVEVTRLMKED
        WSAPPTNCWKLN DASWSE+REVGG+GWIL DCRGEIVLAGNCKIREKKEI ALELM IIRGLQ INMQSRSPIYLESDSVEV RLMK++
Subjt:  WSAPPTNCWKLNADASWSEKREVGGLGWILRDCRGEIVLAGNCKIREKKEIKALELMAIIRGLQSINMQSRSPIYLESDSVEVTRLMKED

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X14.3e-1445.98Show/hide
Query:  WSAPPTNCWKLNADASWSEKREVGGLGWILRDCRGEIVLAGNCKIREKKEIKALELMAIIRGLQSINMQSRSPIYLESDSVEVTRLM
        W  P +N WKLN DA+W       G+GWILRD +GE++  G   IR ++ I  LE+MAI  GL++I  +   PI+LESDS+E   L+
Subjt:  WSAPPTNCWKLNADASWSEKREVGGLGWILRDCRGEIVLAGNCKIREKKEIKALELMAIIRGLQSINMQSRSPIYLESDSVEVTRLM

A0A6J1DNV9 uncharacterized protein LOC1110224039.5e-1445.45Show/hide
Query:  WSAPPTNCWKLNADASWSEKREVGGLGWILRDCRGEIVLAGNCKIREKKEIKALELMAIIRGLQSI-NMQSRSPIYLESDSVEVTRLM
        W  PP + W LNADASWS+    GG+GWI+R   G+IVLAGN  +     +K LE  AI+ GL+++ N+    P+++E+DS EV  L+
Subjt:  WSAPPTNCWKLNADASWSEKREVGGLGWILRDCRGEIVLAGNCKIREKKEIKALELMAIIRGLQSI-NMQSRSPIYLESDSVEVTRLM

A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X24.3e-1445.98Show/hide
Query:  WSAPPTNCWKLNADASWSEKREVGGLGWILRDCRGEIVLAGNCKIREKKEIKALELMAIIRGLQSINMQSRSPIYLESDSVEVTRLM
        W  P +N WKLN DA+W       G+GWILRD +GE++  G   IR ++ I  LE+MAI  GL++I  +   PI+LESDS+E   L+
Subjt:  WSAPPTNCWKLNADASWSEKREVGGLGWILRDCRGEIVLAGNCKIREKKEIKALELMAIIRGLQSINMQSRSPIYLESDSVEVTRLM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G52990.1 thioredoxin family protein2.1e-0530.23Show/hide
Query:  SAPPTNCWKLNADASWSEKREVGGLGWILRDCRGEIVLAGNCKIREKKEIKALELMAIIRGLQSINMQSRSPIYLESDSVEVTRLM
        S+ P+   K N DAS  E   V GLGW++R+ +G ++  G  K + +   +  E  A+I  +Q+ +    + +  E D+  V RL+
Subjt:  SAPPTNCWKLNADASWSEKREVGGLGWILRDCRGEIVLAGNCKIREKKEIKALELMAIIRGLQSINMQSRSPIYLESDSVEVTRLM

AT2G02650.1 Ribonuclease H-like superfamily protein2.2e-0729.89Show/hide
Query:  WSAPPTNCWKLNADASWSEKREVGGLGWILRDCRGEIVLAGNCKIREKKEIKALELMAIIRGLQSINMQSRSPIYLESDSVEVTRLM
        W+ PP    K N D+ +++       GW +R+C G IVL GN K++        E +  +  LQ I       ++ ESDS  +  L+
Subjt:  WSAPPTNCWKLNADASWSEKREVGGLGWILRDCRGEIVLAGNCKIREKKEIKALELMAIIRGLQSINMQSRSPIYLESDSVEVTRLM

AT2G46460.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.3e-0428.74Show/hide
Query:  WSAPPTNCWKLNADASWSEKREVGGLGWILRDCRGEIVLAGNCKIREKKEIKALELMAIIRGLQSINMQSRSPIYLESDSVEVTRLM
        W+ PP    K N D S++ +      GWI+RD  G+ V AG             E  A++  +QS        I+ E D+ EV  ++
Subjt:  WSAPPTNCWKLNADASWSEKREVGGLGWILRDCRGEIVLAGNCKIREKKEIKALELMAIIRGLQSINMQSRSPIYLESDSVEVTRLM

AT4G29090.1 Ribonuclease H-like superfamily protein1.3e-0730Show/hide
Query:  WSAPPTNCWKLNADASWSEKREVGGLGWILRDCRGEIVLAGNCKIREKKEIKALELMAIIRGLQSINMQSRSPIYLESDSVEVTRLMKED
        W  PP    K N DA+W+   E  G+GW+LR+ +GE+   G   + + K +   EL A+   + S++    + +  ESDS  +  ++  D
Subjt:  WSAPPTNCWKLNADASWSEKREVGGLGWILRDCRGEIVLAGNCKIREKKEIKALELMAIIRGLQSINMQSRSPIYLESDSVEVTRLMKED

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.3e-0731.03Show/hide
Query:  WSAPPTNCWKLNADASWSEKREVGGLGWILRDCRGEIVLAGNCKIREKKEIKALELMAIIRGLQSINMQSRSPIYLESDSVEVTRLM
        WS P  +  K N DAS  E+  V GLGWILR+ +G ++  G  K + +   +  E   +I  +Q+        +  E D+  +TR++
Subjt:  WSAPPTNCWKLNADASWSEKREVGGLGWILRDCRGEIVLAGNCKIREKKEIKALELMAIIRGLQSINMQSRSPIYLESDSVEVTRLM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGGAGTGCTCCCCCTACCAATTGCTGGAAACTCAATGCAGATGCGTCATGGAGTGAGAAGCGCGAAGTAGGTGGCCTAGGGTGGATTCTTCGTGACTGTAGGGGGGAGAT
TGTTTTGGCTGGAAACTGCAAAATCAGGGAGAAGAAGGAAATCAAAGCCCTAGAACTAATGGCGATAATTCGAGGACTCCAATCCATCAACATGCAAAGTAGAAGTCCAA
TTTACCTTGAATCGGATTCAGTCGAAGTAACTCGATTAATGAAGGAGGAC
mRNA sequenceShow/hide mRNA sequence
TGGAGTGCTCCCCCTACCAATTGCTGGAAACTCAATGCAGATGCGTCATGGAGTGAGAAGCGCGAAGTAGGTGGCCTAGGGTGGATTCTTCGTGACTGTAGGGGGGAGAT
TGTTTTGGCTGGAAACTGCAAAATCAGGGAGAAGAAGGAAATCAAAGCCCTAGAACTAATGGCGATAATTCGAGGACTCCAATCCATCAACATGCAAAGTAGAAGTCCAA
TTTACCTTGAATCGGATTCAGTCGAAGTAACTCGATTAATGAAGGAGGAC
Protein sequenceShow/hide protein sequence
WSAPPTNCWKLNADASWSEKREVGGLGWILRDCRGEIVLAGNCKIREKKEIKALELMAIIRGLQSINMQSRSPIYLESDSVEVTRLMKED