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MS006506 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006506
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionMADS-box protein JOINTLESS-like
Genome locationscaffold404:475669..475881
RNA-Seq ExpressionMS006506
SyntenyMS006506
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR002100 - Transcription factor, MADS-box
IPR036879 - Transcription factor, MADS-box superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022141961.1 MADS-box protein JOINTLESS-like isoform X1 [Momordica charantia]6.9e-22100Show/hide
Query:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS
        MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS
Subjt:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS

XP_022141962.1 MADS-box protein JOINTLESS-like isoform X2 [Momordica charantia]6.9e-22100Show/hide
Query:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS
        MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS
Subjt:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS

XP_023511719.1 MADS-box protein JOINTLESS-like [Cucurbita pepo subsp. pepo]3.4e-2198.33Show/hide
Query:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS
        MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGL VFSASGKLFDYASS
Subjt:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS

XP_031744925.1 MADS-box protein SVP isoform X2 [Cucumis sativus]3.4e-2198.33Show/hide
Query:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS
        MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGL VFSASGKLFDYASS
Subjt:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS

XP_038886864.1 MADS-box protein SVP-like isoform X3 [Benincasa hispida]3.4e-2198.33Show/hide
Query:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS
        MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGL VFSASGKLFDYASS
Subjt:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS

TrEMBL top hitse value%identityAlignment
A0A6J1CKS2 MADS-box protein JOINTLESS-like isoform X13.3e-22100Show/hide
Query:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS
        MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS
Subjt:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS

A0A6J1CLA0 MADS-box protein JOINTLESS-like isoform X23.3e-22100Show/hide
Query:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS
        MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS
Subjt:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS

A0A6J1I4L2 MADS-box protein JOINTLESS-like isoform X31.7e-2198.33Show/hide
Query:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS
        MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGL VFSASGKLFDYASS
Subjt:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS

A0A6J1I8F3 MADS-box protein JOINTLESS-like isoform X11.7e-2198.33Show/hide
Query:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS
        MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGL VFSASGKLFDYASS
Subjt:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS

A0A6J1IA12 MADS-box protein JOINTLESS-like isoform X21.7e-2198.33Show/hide
Query:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS
        MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGL VFSASGKLFDYASS
Subjt:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS

SwissProt top hitse value%identityAlignment
O82794 MADS-box protein AGL241.1e-1768.85Show/hide
Query:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASSR
        M R+KI+IKKIDNI ARQV FSKRR+G+FKKA EL++LCDA++ L +FSA+GKLF+++SSR
Subjt:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASSR

Q5K4R0 MADS-box transcription factor 479.1e-1772.41Show/hide
Query:  RKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS
        R++I I++IDN+AARQV FSKRR+GLFKKA+EL+ILCDAE+GL VFSA+GKLF +AS+
Subjt:  RKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS

Q6VAM4 MADS-box transcription factor 235.9e-1668.33Show/hide
Query:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS
        M R KI+IK+IDN  +RQV FSKRR GLFKKA+EL+ILCDAE+GL VFS++ +L+D+ASS
Subjt:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS

Q9FUY6 MADS-box protein JOINTLESS8.2e-1871.67Show/hide
Query:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS
        M R+KIQIKKIDN  ARQV FSKRR+GLFKKA+EL++LCDA++ L +FS++GKLFDY+SS
Subjt:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS

Q9FVC1 MADS-box protein SVP1.6e-1666.67Show/hide
Query:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS
        M R+KIQI+KIDN  ARQV FSKRR+GLFKKA+EL++LCDA++ L +FS++GKLF++ SS
Subjt:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS

Arabidopsis top hitse value%identityAlignment
AT2G14210.1 AGAMOUS-like 441.6e-1666.67Show/hide
Query:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS
        M R KI I++IDN  +RQV FSKRR GL KKAKEL+ILCDAE+G+ +FS++GKL+DYAS+
Subjt:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS

AT2G22540.1 K-box region and MADS-box transcription factor family protein1.1e-1766.67Show/hide
Query:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS
        M R+KIQI+KIDN  ARQV FSKRR+GLFKKA+EL++LCDA++ L +FS++GKLF++ SS
Subjt:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS

AT2G22540.2 K-box region and MADS-box transcription factor family protein5.5e-1769.64Show/hide
Query:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFD
        M R+KIQI+KIDN  ARQV FSKRR+GLFKKA+EL++LCDA++ L +FS++GKLFD
Subjt:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFD

AT4G24540.1 AGAMOUS-like 247.6e-1968.85Show/hide
Query:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASSR
        M R+KI+IKKIDNI ARQV FSKRR+G+FKKA EL++LCDA++ L +FSA+GKLF+++SSR
Subjt:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASSR

AT4G37940.1 AGAMOUS-like 215.5e-1770Show/hide
Query:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS
        M R KI I++ID+  +RQV FSKRRKGL KKAKELAILCDAE+GL +FS++GKL+D+ASS
Subjt:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAAATGACGAGGAAGAAAATTCAGATCAAGAAGATAGACAACATAGCTGCAAGGCAAGTGGCATTTTCCAAGAGGAGAAAGGGGCTCTTCAAGAAGGCCAAAGAACTTGC
AATTCTCTGTGATGCTGAGATTGGCCTTTTTGTTTTCTCTGCTTCAGGAAAGCTCTTTGATTATGCAAGCTCAAGGTTTTTTCTCTCTCTAAACTCTAAAATT
mRNA sequenceShow/hide mRNA sequence
AAAATGACGAGGAAGAAAATTCAGATCAAGAAGATAGACAACATAGCTGCAAGGCAAGTGGCATTTTCCAAGAGGAGAAAGGGGCTCTTCAAGAAGGCCAAAGAACTTGC
AATTCTCTGTGATGCTGAGATTGGCCTTTTTGTTTTCTCTGCTTCAGGAAAGCTCTTTGATTATGCAAGCTCAAGGTTTTTTCTCTCTCTAAACTCTAAAATT
Protein sequenceShow/hide protein sequence
KMTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASSRFFLSLNSKI