; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS006512 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006512
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionNuclear transcription factor Y subunit C-4, putative
Genome locationscaffold404:561405..562205
RNA-Seq ExpressionMS006512
SyntenyMS006512
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031439.1 uncharacterized protein E6C27_scaffold139G001960 [Cucumis melo var. makuwa]7.7e-6664.22Show/hide
Query:  LVILTLPCIVSILGRES-SSEFLSVSDLVDSGQLDLLFRDFGYEGITINGRKAVILSSG-TDGLTQVRVMDNDERKLDIVLDSDFDQSGLFSDDSFDFVF
        +VILT PCIVSILG+ES SSEF SVSD+VDS +LDL FRD G+EG + NG K +ILSS  T GL Q+RV+D DE KL+IV+DSDFD++GLFSDDSFDFV 
Subjt:  LVILTLPCIVSILGRES-SSEFLSVSDLVDSGQLDLLFRDFGYEGITINGRKAVILSSG-TDGLTQVRVMDNDERKLDIVLDSDFDQSGLFSDDSFDFVF

Query:  AWGNVDSDFMDRILKTGGILAFP-FTNSGPSNHFQKKPNYRPVFLSRYSSIIVAMEKTAMPDHMVYSSASRRLLTQFSSHTTKAAMRGLEEDILHELPTK
        +W  +DSDF+DRILKTGGI+AFP   N+ PSNHF+KKPNY+P+FL+RY+SIIVAMEKTA+ D++VY+SASRR L + S  TT AA+R LE+         
Subjt:  AWGNVDSDFMDRILKTGGILAFP-FTNSGPSNHFQKKPNYRPVFLSRYSSIIVAMEKTAMPDHMVYSSASRRLLTQFSSHTTKAAMRGLEEDILHELPTK

Query:  AVAKPSNLMRKIKYITDL
         V KP+ L RKI Y+TD+
Subjt:  AVAKPSNLMRKIKYITDL

XP_008455527.1 PREDICTED: uncharacterized protein LOC103495679 [Cucumis melo]3.0e-7862.22Show/hide
Query:  MDFARFNRAKNQLKIKGFRNGAGGAWNSDTHLVIRFPDPRILHVISRSLFLALVILTLPCIVSILGRES-SSEFLSVSDLVDSGQLDLLFRDFGYEGITI
        MD ARFNR         F N    +WNS THLVI FP+ RIL VIS S F A+VILT PCIVSILG+ES SSEF SVSD+VDS +LDL FRD G+EG + 
Subjt:  MDFARFNRAKNQLKIKGFRNGAGGAWNSDTHLVIRFPDPRILHVISRSLFLALVILTLPCIVSILGRES-SSEFLSVSDLVDSGQLDLLFRDFGYEGITI

Query:  NGRKAVILSSG-TDGLTQVRVMDNDERKLDIVLDSDFDQSGLFSDDSFDFVFAWGNVDSDFMDRILKTGGILAFP-FTNSGPSNHFQKKPNYRPVFLSRY
        NG K +ILSS  T GL Q+RV+D DE KL+IV+DSDFD++GLFSDDSFDFV +W  +DSDF+DRILKTGGI+AFP   N+ PSNHF+KKPNY+P+FL+RY
Subjt:  NGRKAVILSSG-TDGLTQVRVMDNDERKLDIVLDSDFDQSGLFSDDSFDFVFAWGNVDSDFMDRILKTGGILAFP-FTNSGPSNHFQKKPNYRPVFLSRY

Query:  SSIIVAMEKTAMPDHMVYSSASRRLLTQFSSHTTKAAMRGLEEDILHELPTKAVAKPSNLMRKIKYITDL
        +SIIVAMEKTA+ D++VY+SASRR L + S  TT AA+R LE+          V KP+ L RKI Y+TD+
Subjt:  SSIIVAMEKTAMPDHMVYSSASRRLLTQFSSHTTKAAMRGLEEDILHELPTKAVAKPSNLMRKIKYITDL

XP_011659719.1 uncharacterized protein LOC105436238 [Cucumis sativus]7.0e-7560.37Show/hide
Query:  MDFARFNRAKNQLKIKGFRNGAGGAWNSDTHLVIRFPDPRILHVISRSLFLALVILTLPCIVSILGRESS-SEFLSVSDLVDSGQLDLLFRDFGYEGITI
        MD ARFNR         F N    +WNS THLVI FP  +IL VIS S F A+VILT PCIVSILG+E+  SEF SV D+VDS +LDL FRD G+EG + 
Subjt:  MDFARFNRAKNQLKIKGFRNGAGGAWNSDTHLVIRFPDPRILHVISRSLFLALVILTLPCIVSILGRESS-SEFLSVSDLVDSGQLDLLFRDFGYEGITI

Query:  NGRKAVILSSG-TDGLTQVRVMDNDERKLDIVLDSDFDQSGLFSDDSFDFVFAWGNVDSDFMDRILKTGGILAFPFTNSG-PSNHFQKKPNYRPVFLSRY
        NG K +ILSS  T+GL Q+RV+D DE KL+IV+DSDFD++GLFSDDSFDFV +WG +DSDF+DRILK GGI+AFP  N+  PS+HF+KKPNY+PVFL+RY
Subjt:  NGRKAVILSSG-TDGLTQVRVMDNDERKLDIVLDSDFDQSGLFSDDSFDFVFAWGNVDSDFMDRILKTGGILAFPFTNSG-PSNHFQKKPNYRPVFLSRY

Query:  SSIIVAMEKTAMPDHMVYSSASRRLLTQFSSHTTKAAMRGLEEDILHELPTKAVAKPSNLMRKIKYITDL
        +SIIVAMEKT M D +VY+SASRR L + S  T  AA+R LE+          V KP+ L RKIKY+ D+
Subjt:  SSIIVAMEKTAMPDHMVYSSASRRLLTQFSSHTTKAAMRGLEEDILHELPTKAVAKPSNLMRKIKYITDL

XP_022141924.1 uncharacterized protein LOC111012177 [Momordica charantia]3.7e-14599.63Show/hide
Query:  MDFARFNRAKNQLKIKGFRNGAGGAWNSDTHLVIRFPDPRILHVISRSLFLALVILTLPCIVSILGRESSSEFLSVSDLVDSGQLDLLFRDFGYEGITIN
        MDFARFNRAKNQLKIKGFRNGAGGAWNSDTHLVI+FPDPRILHVISRSLFLALVILTLPCIVSILGRESSSEFLSVSDLVDSGQLDLLFRDFGYEGITIN
Subjt:  MDFARFNRAKNQLKIKGFRNGAGGAWNSDTHLVIRFPDPRILHVISRSLFLALVILTLPCIVSILGRESSSEFLSVSDLVDSGQLDLLFRDFGYEGITIN

Query:  GRKAVILSSGTDGLTQVRVMDNDERKLDIVLDSDFDQSGLFSDDSFDFVFAWGNVDSDFMDRILKTGGILAFPFTNSGPSNHFQKKPNYRPVFLSRYSSI
        GRKAVILSSGTDGLTQVRVMDNDERKLDIVLDSDFDQSGLFSDDSFDFVFAWGNVDSDFMDRILKTGGILAFPFTNSGPSNHFQKKPNYRPVFLSRYSSI
Subjt:  GRKAVILSSGTDGLTQVRVMDNDERKLDIVLDSDFDQSGLFSDDSFDFVFAWGNVDSDFMDRILKTGGILAFPFTNSGPSNHFQKKPNYRPVFLSRYSSI

Query:  IVAMEKTAMPDHMVYSSASRRLLTQFSSHTTKAAMRGLEEDILHELPTKAVAKPSNLMRKIKYITDL
        IVAMEKTAMPDHMVYSSASRRLLTQFSSHTTKAAMRGLEEDILHELPTKAVAKPSNLMRKIKYITDL
Subjt:  IVAMEKTAMPDHMVYSSASRRLLTQFSSHTTKAAMRGLEEDILHELPTKAVAKPSNLMRKIKYITDL

XP_038889013.1 uncharacterized protein LOC120078778 [Benincasa hispida]3.3e-8566.42Show/hide
Query:  MDFARFNRAKNQLKIKGFRNGAGGAWNSDTHLVIRFPDPRILHVISRSLFLALVILTLPCIVSILGRESSSEFLSVSDLVDSGQLDLLFRDFGYEGITIN
        MDF  FNR  +    K F      +WNS THLVI+FP+ +IL VIS SLF A+ ILT P IVSILG+ES SEF SVSD++DS QLDL FRD G+EG+TIN
Subjt:  MDFARFNRAKNQLKIKGFRNGAGGAWNSDTHLVIRFPDPRILHVISRSLFLALVILTLPCIVSILGRESSSEFLSVSDLVDSGQLDLLFRDFGYEGITIN

Query:  GRKAVILSSG-TDGLTQVRVMDNDERKLDIVLDSDFDQSGLFSDDSFDFVFAWGNVDSDFMDRILKTGGILAFPFTNSGPSNHFQKKPNYRPVFLSRYSS
        G KA+ILSS  T GL Q+RV+D DE KL+IV+DSDFD+SGLFSDDSFDFV + G VDSDF+DRILK GGI+AFP  N+ PSNHFQKKPNYRPVFL+RYSS
Subjt:  GRKAVILSSG-TDGLTQVRVMDNDERKLDIVLDSDFDQSGLFSDDSFDFVFAWGNVDSDFMDRILKTGGILAFPFTNSGPSNHFQKKPNYRPVFLSRYSS

Query:  IIVAMEKTAMPDHMVYSSASRRLLTQFSSHTTKAAMRGLEEDILHELPTKAVAKPSNLMRKIKYITDL
        IIV MEKTAM D +VY+S+SRR L QFS  T  AA+R L ED+L E P K VAKP+ L RK+KY+ DL
Subjt:  IIVAMEKTAMPDHMVYSSASRRLLTQFSSHTTKAAMRGLEEDILHELPTKAVAKPSNLMRKIKYITDL

TrEMBL top hitse value%identityAlignment
A0A0A0K451 Uncharacterized protein3.4e-7560.37Show/hide
Query:  MDFARFNRAKNQLKIKGFRNGAGGAWNSDTHLVIRFPDPRILHVISRSLFLALVILTLPCIVSILGRESS-SEFLSVSDLVDSGQLDLLFRDFGYEGITI
        MD ARFNR         F N    +WNS THLVI FP  +IL VIS S F A+VILT PCIVSILG+E+  SEF SV D+VDS +LDL FRD G+EG + 
Subjt:  MDFARFNRAKNQLKIKGFRNGAGGAWNSDTHLVIRFPDPRILHVISRSLFLALVILTLPCIVSILGRESS-SEFLSVSDLVDSGQLDLLFRDFGYEGITI

Query:  NGRKAVILSSG-TDGLTQVRVMDNDERKLDIVLDSDFDQSGLFSDDSFDFVFAWGNVDSDFMDRILKTGGILAFPFTNSG-PSNHFQKKPNYRPVFLSRY
        NG K +ILSS  T+GL Q+RV+D DE KL+IV+DSDFD++GLFSDDSFDFV +WG +DSDF+DRILK GGI+AFP  N+  PS+HF+KKPNY+PVFL+RY
Subjt:  NGRKAVILSSG-TDGLTQVRVMDNDERKLDIVLDSDFDQSGLFSDDSFDFVFAWGNVDSDFMDRILKTGGILAFPFTNSG-PSNHFQKKPNYRPVFLSRY

Query:  SSIIVAMEKTAMPDHMVYSSASRRLLTQFSSHTTKAAMRGLEEDILHELPTKAVAKPSNLMRKIKYITDL
        +SIIVAMEKT M D +VY+SASRR L + S  T  AA+R LE+          V KP+ L RKIKY+ D+
Subjt:  SSIIVAMEKTAMPDHMVYSSASRRLLTQFSSHTTKAAMRGLEEDILHELPTKAVAKPSNLMRKIKYITDL

A0A1S3C0P0 uncharacterized protein LOC1034956791.5e-7862.22Show/hide
Query:  MDFARFNRAKNQLKIKGFRNGAGGAWNSDTHLVIRFPDPRILHVISRSLFLALVILTLPCIVSILGRES-SSEFLSVSDLVDSGQLDLLFRDFGYEGITI
        MD ARFNR         F N    +WNS THLVI FP+ RIL VIS S F A+VILT PCIVSILG+ES SSEF SVSD+VDS +LDL FRD G+EG + 
Subjt:  MDFARFNRAKNQLKIKGFRNGAGGAWNSDTHLVIRFPDPRILHVISRSLFLALVILTLPCIVSILGRES-SSEFLSVSDLVDSGQLDLLFRDFGYEGITI

Query:  NGRKAVILSSG-TDGLTQVRVMDNDERKLDIVLDSDFDQSGLFSDDSFDFVFAWGNVDSDFMDRILKTGGILAFP-FTNSGPSNHFQKKPNYRPVFLSRY
        NG K +ILSS  T GL Q+RV+D DE KL+IV+DSDFD++GLFSDDSFDFV +W  +DSDF+DRILKTGGI+AFP   N+ PSNHF+KKPNY+P+FL+RY
Subjt:  NGRKAVILSSG-TDGLTQVRVMDNDERKLDIVLDSDFDQSGLFSDDSFDFVFAWGNVDSDFMDRILKTGGILAFP-FTNSGPSNHFQKKPNYRPVFLSRY

Query:  SSIIVAMEKTAMPDHMVYSSASRRLLTQFSSHTTKAAMRGLEEDILHELPTKAVAKPSNLMRKIKYITDL
        +SIIVAMEKTA+ D++VY+SASRR L + S  TT AA+R LE+          V KP+ L RKI Y+TD+
Subjt:  SSIIVAMEKTAMPDHMVYSSASRRLLTQFSSHTTKAAMRGLEEDILHELPTKAVAKPSNLMRKIKYITDL

A0A314ZKA6 Uncharacterized protein6.9e-4443.49Show/hide
Query:  MDFARFNRAKNQLKIKGFRNGAGGAWNSDTHLVIRFPDPRILHVISRSLFLALVILTLPCIVSILGRESSSE--FLSVSDLVDSGQLDLLFRDFGYEGIT
        M+ A    AK+Q K+K    G  G  +S+THLVI+ PD ++L +ISRS+FL LVILTLPCI S+L   S SE  + + S++ +  QL LLF D   EG+ 
Subjt:  MDFARFNRAKNQLKIKGFRNGAGGAWNSDTHLVIRFPDPRILHVISRSLFLALVILTLPCIVSILGRESSSE--FLSVSDLVDSGQLDLLFRDFGYEGIT

Query:  INGRKAVILSSGTDGLTQVRVMDNDERKLDIVLDSDFDQSGLFSDDSFDFVFAWGNVDSDFMDRILKTGGILAFPFTNSGPSNHFQKKPNYRPVFLSRYS
            KA+I+S    G+ Q  +   D +  DIV+DSD ++   F D+S DF FA+  VD+ F+DRILK GGI+A P +N  PSN F+ KPNY+ V+L RY+
Subjt:  INGRKAVILSSGTDGLTQVRVMDNDERKLDIVLDSDFDQSGLFSDDSFDFVFAWGNVDSDFMDRILKTGGILAFPFTNSGPSNHFQKKPNYRPVFLSRYS

Query:  SIIVAMEKTAMPDHMVYSSASRRLLTQFSSHTTKAAMRGLEEDILHELPTKAVAKPSNLMRKIKYITDL
        S  VAM KT     +   S   R L QF +   K  + GL ED++ E P + +AK +  ++KIK++ +L
Subjt:  SIIVAMEKTAMPDHMVYSSASRRLLTQFSSHTTKAAMRGLEEDILHELPTKAVAKPSNLMRKIKYITDL

A0A5A7SQ50 Uncharacterized protein3.7e-6664.22Show/hide
Query:  LVILTLPCIVSILGRES-SSEFLSVSDLVDSGQLDLLFRDFGYEGITINGRKAVILSSG-TDGLTQVRVMDNDERKLDIVLDSDFDQSGLFSDDSFDFVF
        +VILT PCIVSILG+ES SSEF SVSD+VDS +LDL FRD G+EG + NG K +ILSS  T GL Q+RV+D DE KL+IV+DSDFD++GLFSDDSFDFV 
Subjt:  LVILTLPCIVSILGRES-SSEFLSVSDLVDSGQLDLLFRDFGYEGITINGRKAVILSSG-TDGLTQVRVMDNDERKLDIVLDSDFDQSGLFSDDSFDFVF

Query:  AWGNVDSDFMDRILKTGGILAFP-FTNSGPSNHFQKKPNYRPVFLSRYSSIIVAMEKTAMPDHMVYSSASRRLLTQFSSHTTKAAMRGLEEDILHELPTK
        +W  +DSDF+DRILKTGGI+AFP   N+ PSNHF+KKPNY+P+FL+RY+SIIVAMEKTA+ D++VY+SASRR L + S  TT AA+R LE+         
Subjt:  AWGNVDSDFMDRILKTGGILAFP-FTNSGPSNHFQKKPNYRPVFLSRYSSIIVAMEKTAMPDHMVYSSASRRLLTQFSSHTTKAAMRGLEEDILHELPTK

Query:  AVAKPSNLMRKIKYITDL
         V KP+ L RKI Y+TD+
Subjt:  AVAKPSNLMRKIKYITDL

A0A6J1CK51 uncharacterized protein LOC1110121771.8e-14599.63Show/hide
Query:  MDFARFNRAKNQLKIKGFRNGAGGAWNSDTHLVIRFPDPRILHVISRSLFLALVILTLPCIVSILGRESSSEFLSVSDLVDSGQLDLLFRDFGYEGITIN
        MDFARFNRAKNQLKIKGFRNGAGGAWNSDTHLVI+FPDPRILHVISRSLFLALVILTLPCIVSILGRESSSEFLSVSDLVDSGQLDLLFRDFGYEGITIN
Subjt:  MDFARFNRAKNQLKIKGFRNGAGGAWNSDTHLVIRFPDPRILHVISRSLFLALVILTLPCIVSILGRESSSEFLSVSDLVDSGQLDLLFRDFGYEGITIN

Query:  GRKAVILSSGTDGLTQVRVMDNDERKLDIVLDSDFDQSGLFSDDSFDFVFAWGNVDSDFMDRILKTGGILAFPFTNSGPSNHFQKKPNYRPVFLSRYSSI
        GRKAVILSSGTDGLTQVRVMDNDERKLDIVLDSDFDQSGLFSDDSFDFVFAWGNVDSDFMDRILKTGGILAFPFTNSGPSNHFQKKPNYRPVFLSRYSSI
Subjt:  GRKAVILSSGTDGLTQVRVMDNDERKLDIVLDSDFDQSGLFSDDSFDFVFAWGNVDSDFMDRILKTGGILAFPFTNSGPSNHFQKKPNYRPVFLSRYSSI

Query:  IVAMEKTAMPDHMVYSSASRRLLTQFSSHTTKAAMRGLEEDILHELPTKAVAKPSNLMRKIKYITDL
        IVAMEKTAMPDHMVYSSASRRLLTQFSSHTTKAAMRGLEEDILHELPTKAVAKPSNLMRKIKYITDL
Subjt:  IVAMEKTAMPDHMVYSSASRRLLTQFSSHTTKAAMRGLEEDILHELPTKAVAKPSNLMRKIKYITDL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTTTGCCCGTTTTAATCGAGCCAAGAACCAACTCAAGATCAAAGGATTCAGAAATGGCGCCGGTGGCGCCTGGAATTCTGACACGCATCTGGTTATCAGGTTTCC
TGATCCACGGATCCTTCACGTAATCTCTCGTTCGTTGTTTTTGGCTTTGGTTATTCTCACTCTGCCTTGTATTGTTTCCATTCTCGGGCGAGAAAGTAGCTCTGAGTTTT
TATCTGTATCTGATTTGGTCGATTCTGGGCAATTGGATCTGCTTTTTCGTGATTTCGGTTACGAAGGCATCACCATTAATGGCCGTAAGGCTGTCATTTTGAGCTCTGGA
ACCGACGGCCTGACTCAGGTTCGTGTGATGGACAATGACGAACGCAAACTTGACATTGTTCTGGACTCTGATTTTGATCAGAGTGGGTTGTTTTCTGATGATTCTTTTGA
TTTTGTGTTTGCTTGGGGCAATGTGGACTCTGATTTCATGGATAGAATCCTCAAAACTGGTGGCATTTTGGCCTTCCCATTCACCAACAGTGGCCCATCAAACCATTTCC
AAAAGAAACCAAATTACAGACCTGTGTTTCTCAGCAGATACAGCTCCATTATTGTGGCAATGGAGAAGACAGCCATGCCTGATCACATGGTTTATTCTTCAGCTTCAAGA
AGACTCCTCACCCAATTCTCATCACACACCACTAAGGCTGCAATGAGAGGCCTTGAGGAGGATATTCTACATGAGCTACCAACCAAGGCCGTGGCAAAACCAAGCAACCT
TATGAGGAAAATCAAGTACATCACCGACCTT
mRNA sequenceShow/hide mRNA sequence
ATGGATTTTGCCCGTTTTAATCGAGCCAAGAACCAACTCAAGATCAAAGGATTCAGAAATGGCGCCGGTGGCGCCTGGAATTCTGACACGCATCTGGTTATCAGGTTTCC
TGATCCACGGATCCTTCACGTAATCTCTCGTTCGTTGTTTTTGGCTTTGGTTATTCTCACTCTGCCTTGTATTGTTTCCATTCTCGGGCGAGAAAGTAGCTCTGAGTTTT
TATCTGTATCTGATTTGGTCGATTCTGGGCAATTGGATCTGCTTTTTCGTGATTTCGGTTACGAAGGCATCACCATTAATGGCCGTAAGGCTGTCATTTTGAGCTCTGGA
ACCGACGGCCTGACTCAGGTTCGTGTGATGGACAATGACGAACGCAAACTTGACATTGTTCTGGACTCTGATTTTGATCAGAGTGGGTTGTTTTCTGATGATTCTTTTGA
TTTTGTGTTTGCTTGGGGCAATGTGGACTCTGATTTCATGGATAGAATCCTCAAAACTGGTGGCATTTTGGCCTTCCCATTCACCAACAGTGGCCCATCAAACCATTTCC
AAAAGAAACCAAATTACAGACCTGTGTTTCTCAGCAGATACAGCTCCATTATTGTGGCAATGGAGAAGACAGCCATGCCTGATCACATGGTTTATTCTTCAGCTTCAAGA
AGACTCCTCACCCAATTCTCATCACACACCACTAAGGCTGCAATGAGAGGCCTTGAGGAGGATATTCTACATGAGCTACCAACCAAGGCCGTGGCAAAACCAAGCAACCT
TATGAGGAAAATCAAGTACATCACCGACCTT
Protein sequenceShow/hide protein sequence
MDFARFNRAKNQLKIKGFRNGAGGAWNSDTHLVIRFPDPRILHVISRSLFLALVILTLPCIVSILGRESSSEFLSVSDLVDSGQLDLLFRDFGYEGITINGRKAVILSSG
TDGLTQVRVMDNDERKLDIVLDSDFDQSGLFSDDSFDFVFAWGNVDSDFMDRILKTGGILAFPFTNSGPSNHFQKKPNYRPVFLSRYSSIIVAMEKTAMPDHMVYSSASR
RLLTQFSSHTTKAAMRGLEEDILHELPTKAVAKPSNLMRKIKYITDL