; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS006514 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006514
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold404:665718..665990
RNA-Seq ExpressionMS006514
SyntenyMS006514
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG48983.1 hypothetical protein EZV62_024858 [Acer yangbiense]2.1e-0742.5Show/hide
Query:  KINTDVAIRLDENRMGFGAMIRNSKGEIMLTLAKEVGCVYDPAIEEASAIRDGSTEAIELGFFNLEVESDSLQVIMKIKN
        KINTD A+ + EN +G   +IRN +G++ML+  K     Y P I EA A+ +G   A   GFF   +ESD+L V+  I N
Subjt:  KINTDVAIRLDENRMGFGAMIRNSKGEIMLTLAKEVGCVYDPAIEEASAIRDGSTEAIELGFFNLEVESDSLQVIMKIKN

XP_018826560.1 uncharacterized protein LOC108995438 [Juglans regia]6.2e-0736.36Show/hide
Query:  KINTDVAIRLDENRMGFGAMIRNSKGEIMLTLAKEVGCVYDPAIEEASAIRDGSTEAIELGFFNLEVESDSLQVIMKIKNPQPDTIWS
        K N D AI    +R+G G ++RNS+G +M +L   +  + DP + EA A R  S+  +ELG  ++ +E DSL V+  I++ +    WS
Subjt:  KINTDVAIRLDENRMGFGAMIRNSKGEIMLTLAKEVGCVYDPAIEEASAIRDGSTEAIELGFFNLEVESDSLQVIMKIKNPQPDTIWS

XP_024039172.1 uncharacterized protein LOC112097823 [Citrus clementina]8.1e-0745.12Show/hide
Query:  KINTDVAIRLDENRMGFGAMIRNSKGEIMLTLAKEVGCVYDPAIEEASAIRDGSTEAIELGFFNLEVESDSLQVIMKIKNPQ
        K+NTDVA+ +   ++ +GA+IRN +G +ML          D AI EA AIR G   A E G F L +ESDSL VI  I+  Q
Subjt:  KINTDVAIRLDENRMGFGAMIRNSKGEIMLTLAKEVGCVYDPAIEEASAIRDGSTEAIELGFFNLEVESDSLQVIMKIKNPQ

XP_042962682.1 uncharacterized protein LOC122296954 [Carya illinoinensis]2.8e-0731.82Show/hide
Query:  LKINTDVAIRLDENRMGFGAMIRNSKGEIMLTLAKEVGCVYDPAIEEASAIRDGSTEAIELGFFNLEVESDSLQVIMKIKNPQPDTIW
        +K+N D A+++ E RMG G +IR+  G++M++L  +   V DP + E  A+R       +L   ++  E D+L+V+  + NP+    W
Subjt:  LKINTDVAIRLDENRMGFGAMIRNSKGEIMLTLAKEVGCVYDPAIEEASAIRDGSTEAIELGFFNLEVESDSLQVIMKIKNPQPDTIW

XP_042964529.1 uncharacterized protein LOC122298728 [Carya illinoinensis]1.9e-0839.51Show/hide
Query:  LKINTDVAIRLDENRMGFGAMIRNSKGEIMLTLAKEVGCVYDPAIEEASAIRDGSTEAIELGFFNLEVESDSLQVIMKIKN
        +K+N D A+R+D N++G G ++R+ + E++ +L K V C++DP++ EA A++       ELGF N+ +E D+ QVI+K  N
Subjt:  LKINTDVAIRLDENRMGFGAMIRNSKGEIMLTLAKEVGCVYDPAIEEASAIRDGSTEAIELGFFNLEVESDSLQVIMKIKN

TrEMBL top hitse value%identityAlignment
A0A2I4F4I0 uncharacterized protein LOC1089954383.0e-0736.36Show/hide
Query:  KINTDVAIRLDENRMGFGAMIRNSKGEIMLTLAKEVGCVYDPAIEEASAIRDGSTEAIELGFFNLEVESDSLQVIMKIKNPQPDTIWS
        K N D AI    +R+G G ++RNS+G +M +L   +  + DP + EA A R  S+  +ELG  ++ +E DSL V+  I++ +    WS
Subjt:  KINTDVAIRLDENRMGFGAMIRNSKGEIMLTLAKEVGCVYDPAIEEASAIRDGSTEAIELGFFNLEVESDSLQVIMKIKNPQPDTIWS

A0A2P5ENY9 Ribonuclease H-like domain containing protein1.1e-0643.42Show/hide
Query:  LKINTDVAIRLDENRMGFGAMIRNSKGEIMLTLAKEVGCVYDPAIEEASAIRDGSTEAIELGFFNLEVESDSLQVI
        LK+N D A+ L E  +G GA+IR+ KG++M  +AK +   +DP I E  AIR+G   A E       VE+DSL+V+
Subjt:  LKINTDVAIRLDENRMGFGAMIRNSKGEIMLTLAKEVGCVYDPAIEEASAIRDGSTEAIELGFFNLEVESDSLQVI

A0A5C7GQX3 RNase H domain-containing protein1.1e-0641.03Show/hide
Query:  KINTDVAIRLDENRMGFGAMIRNSKGEIMLTLAKEVGCVYDPAIEEASAIRDGSTEAIELGFFNLEVESDSLQVIMKI
        KINTD A+ +  N  G G +IRN +G++ML+  K     + P I EA A+ +G   A   GFF   +ESD+L V+  I
Subjt:  KINTDVAIRLDENRMGFGAMIRNSKGEIMLTLAKEVGCVYDPAIEEASAIRDGSTEAIELGFFNLEVESDSLQVIMKI

A0A5C7GW84 RNase H domain-containing protein1.0e-0742.5Show/hide
Query:  KINTDVAIRLDENRMGFGAMIRNSKGEIMLTLAKEVGCVYDPAIEEASAIRDGSTEAIELGFFNLEVESDSLQVIMKIKN
        KINTD A+ + EN +G   +IRN +G++ML+  K     Y P I EA A+ +G   A   GFF   +ESD+L V+  I N
Subjt:  KINTDVAIRLDENRMGFGAMIRNSKGEIMLTLAKEVGCVYDPAIEEASAIRDGSTEAIELGFFNLEVESDSLQVIMKIKN

A0A6A6L732 RNase H domain-containing protein1.1e-0639.51Show/hide
Query:  INTDVAIRLDENRMGFGAMIRNSKGEIMLTLAKEVGCVYDPAIEEASAIRDGSTEAIELGFFNLEVESDSLQVIMKIKNPQ
        +NTD ++      +G GA+IRN KGE+M+   K +   +DP + E  AI+ G   AI+ GF NL+VESD+L  +  ++  Q
Subjt:  INTDVAIRLDENRMGFGAMIRNSKGEIMLTLAKEVGCVYDPAIEEASAIRDGSTEAIELGFFNLEVESDSLQVIMKIKNPQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTGAAAATTAATACTGACGTTGCAATCAGACTCGATGAAAATCGTATGGGTTTTGGTGCTATGATCCGTAATTCTAAGGGAGAAATTATGCTTACTCTTGCAAAAGAAGT
TGGGTGTGTATACGATCCAGCAATAGAAGAGGCGTCGGCGATTAGGGATGGATCGACAGAAGCGATTGAGCTTGGCTTCTTTAATTTGGAGGTGGAGTCGGATTCTCTTC
AGGTGATCATGAAGATTAAGAACCCTCAGCCTGACACGATTTGGAGCTCGGTT
mRNA sequenceShow/hide mRNA sequence
CTGAAAATTAATACTGACGTTGCAATCAGACTCGATGAAAATCGTATGGGTTTTGGTGCTATGATCCGTAATTCTAAGGGAGAAATTATGCTTACTCTTGCAAAAGAAGT
TGGGTGTGTATACGATCCAGCAATAGAAGAGGCGTCGGCGATTAGGGATGGATCGACAGAAGCGATTGAGCTTGGCTTCTTTAATTTGGAGGTGGAGTCGGATTCTCTTC
AGGTGATCATGAAGATTAAGAACCCTCAGCCTGACACGATTTGGAGCTCGGTT
Protein sequenceShow/hide protein sequence
LKINTDVAIRLDENRMGFGAMIRNSKGEIMLTLAKEVGCVYDPAIEEASAIRDGSTEAIELGFFNLEVESDSLQVIMKIKNPQPDTIWSSV