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MS006518 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006518
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold404:696072..696374
RNA-Seq ExpressionMS006518
SyntenyMS006518
Gene Ontology termsNA
InterPro domainsIPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]2.0e-2254Show/hide
Query:  RLRNAVGSFEEVDCNKGKYCCGEILRVRVCYDISKALRRGIKLNLDGPIGGFWIPMKYERLPEFYSYRGMLGHHVKDCDNFFESKDGDSKNEQFELWLRY
        RL NA+G FE+V+ N   +C G  LRVRV +D+ K L RGIKLNLDGP+GG WIP++YERLP+F  + G L H +KDC +     D  SKN Q+  WLR+
Subjt:  RLRNAVGSFEEVDCNKGKYCCGEILRVRVCYDISKALRRGIKLNLDGPIGGFWIPMKYERLPEFYSYRGMLGHHVKDCDNFFESKDGDSKNEQFELWLRY

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]1.2e-2249.02Show/hide
Query:  IRLRNAVGSFEEVDCNKGKYCCGEILRVRVCYDISKALRRGIKLNLDGPIGGFWIPMKYERLPEFYSYRGMLGHHVKDCD-NFFESKDGDSKNEQFELWL
        IRL NA+G+F +VDCN+  +  G  LR+RV  DI+K LRRGIK+N+DGP+GG WIP++YERLP+F  + G++GH   DCD  +  ++D      ++  WL
Subjt:  IRLRNAVGSFEEVDCNKGKYCCGEILRVRVCYDISKALRRGIKLNLDGPIGGFWIPMKYERLPEFYSYRGMLGHHVKDCD-NFFESKDGDSKNEQFELWL

Query:  RY
        R+
Subjt:  RY

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]8.6e-1851.49Show/hide
Query:  IRLRNAVGSFEEVDCNKGKYCCGEILRVRVCYDISKALRRGIKLNLDGPIGGFWIPMKYERLPEFYSYRGMLGHHVKDCDNFFESKDGDSKNEQFELWLR
        IRL NA+G FEE DC+      G  LRVRV  DISK LRRGIKLNLDGPIGG WIP++YERLP+F  + G+                   K  Q+  WLR
Subjt:  IRLRNAVGSFEEVDCNKGKYCCGEILRVRVCYDISKALRRGIKLNLDGPIGGFWIPMKYERLPEFYSYRGMLGHHVKDCDNFFESKDGDSKNEQFELWLR

Query:  Y
        Y
Subjt:  Y

XP_028122006.1 uncharacterized protein LOC114319195 [Camellia sinensis]1.2e-1142.42Show/hide
Query:  NAVGSFEEVDCNKGKYCCGEILRVRVCYDISKALRRGIKLNLDG--PIGGFWIPMKYERLPEFYSYRGMLGHHVKDCDNFFESKDGDSKNE-QFELWLR
        NAVG F ++D   G    G  +R+RV  D+ K LRRG+KL L    PI   W+  KYERLP +  + G LGH  ++CD+   S DG   +  Q+  WLR
Subjt:  NAVGSFEEVDCNKGKYCCGEILRVRVCYDISKALRRGIKLNLDG--PIGGFWIPMKYERLPEFYSYRGMLGHHVKDCDNFFESKDGDSKNE-QFELWLR

XP_042952131.1 uncharacterized protein LOC122289219 [Carya illinoinensis]1.6e-1143.16Show/hide
Query:  NAVGSFEEVDCNKGKYCCGEILRVRVCYDISKALRRGIKLNLDGPIGGFWIPMKYERLPEFYSYRGMLGHHVKDCDNFFESKDGDSKNEQFELWL
        N +G  EEVD  +G+   GE +R+RV  DIS+ L RG+++ L G  G  WI   YERLP F  + G LGH  KDC+     +   S N  F  WL
Subjt:  NAVGSFEEVDCNKGKYCCGEILRVRVCYDISKALRRGIKLNLDGPIGGFWIPMKYERLPEFYSYRGMLGHHVKDCDNFFESKDGDSKNEQFELWL

TrEMBL top hitse value%identityAlignment
A0A2Z6LV25 Uncharacterized protein (Fragment)2.9e-1138.46Show/hide
Query:  RLRNAVGSFEEVDCNKGKYCCGEILRVRVCYDISKALRRGIKLNLDGPIGGFWIPMKYERLPEFYSYRGMLGHHVKDCDNF-----FESKDGDSKNEQFE
        +L N VG+FEE+D  +     G+ LR+RV  D+ K L+RG KLN  G     W+  KYERLP F    G +GH ++DC++       +  + + K + F 
Subjt:  RLRNAVGSFEEVDCNKGKYCCGEILRVRVCYDISKALRRGIKLNLDGPIGGFWIPMKYERLPEFYSYRGMLGHHVKDCDNF-----FESKDGDSKNEQFE

Query:  LWLR
         WLR
Subjt:  LWLR

A0A392M033 CCHC-type domain-containing protein (Fragment)6.5e-1139.42Show/hide
Query:  RLRNAVGSFEEVDCNKGKYCCGEILRVRVCYDISKALRRGIKLNLDGPIGGFWIPMKYERLPEFYSYRGMLGHHVKDCDNF-----FESKDGDSKNEQFE
        +L N VG+FEE+D  K     G+ LR+RV  D+ K L+RG KLN  G     W+  KYERLP F    G +GH ++DC++       +  + + K + F 
Subjt:  RLRNAVGSFEEVDCNKGKYCCGEILRVRVCYDISKALRRGIKLNLDGPIGGFWIPMKYERLPEFYSYRGMLGHHVKDCDNF-----FESKDGDSKNEQFE

Query:  LWLR
         WLR
Subjt:  LWLR

A0A6J1BSZ1 uncharacterized protein LOC1110054819.6e-2354Show/hide
Query:  RLRNAVGSFEEVDCNKGKYCCGEILRVRVCYDISKALRRGIKLNLDGPIGGFWIPMKYERLPEFYSYRGMLGHHVKDCDNFFESKDGDSKNEQFELWLRY
        RL NA+G FE+V+ N   +C G  LRVRV +D+ K L RGIKLNLDGP+GG WIP++YERLP+F  + G L H +KDC +     D  SKN Q+  WLR+
Subjt:  RLRNAVGSFEEVDCNKGKYCCGEILRVRVCYDISKALRRGIKLNLDGPIGGFWIPMKYERLPEFYSYRGMLGHHVKDCDNFFESKDGDSKNEQFELWLRY

A0A6J1DU55 uncharacterized protein LOC1110231355.6e-2349.02Show/hide
Query:  IRLRNAVGSFEEVDCNKGKYCCGEILRVRVCYDISKALRRGIKLNLDGPIGGFWIPMKYERLPEFYSYRGMLGHHVKDCD-NFFESKDGDSKNEQFELWL
        IRL NA+G+F +VDCN+  +  G  LR+RV  DI+K LRRGIK+N+DGP+GG WIP++YERLP+F  + G++GH   DCD  +  ++D      ++  WL
Subjt:  IRLRNAVGSFEEVDCNKGKYCCGEILRVRVCYDISKALRRGIKLNLDGPIGGFWIPMKYERLPEFYSYRGMLGHHVKDCD-NFFESKDGDSKNEQFELWL

Query:  RY
        R+
Subjt:  RY

A0A6J1DX30 uncharacterized protein LOC1110248744.2e-1851.49Show/hide
Query:  IRLRNAVGSFEEVDCNKGKYCCGEILRVRVCYDISKALRRGIKLNLDGPIGGFWIPMKYERLPEFYSYRGMLGHHVKDCDNFFESKDGDSKNEQFELWLR
        IRL NA+G FEE DC+      G  LRVRV  DISK LRRGIKLNLDGPIGG WIP++YERLP+F  + G+                   K  Q+  WLR
Subjt:  IRLRNAVGSFEEVDCNKGKYCCGEILRVRVCYDISKALRRGIKLNLDGPIGGFWIPMKYERLPEFYSYRGMLGHHVKDCDNFFESKDGDSKNEQFELWLR

Query:  Y
        Y
Subjt:  Y

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTCGCCTGCGAAATGCTGTAGGTTCCTTTGAAGAGGTTGACTGCAACAAAGGGAAATACTGTTGTGGCGAGATCCTCAGAGTTCGTGTCTGTTATGATATTTCTAAGGC
ATTAAGAAGGGGAATTAAGTTGAACCTTGATGGACCTATCGGGGGTTTTTGGATTCCTATGAAGTATGAACGTCTCCCTGAGTTCTACTCTTATCGTGGAATGCTAGGCC
ATCATGTTAAAGACTGTGATAATTTTTTTGAAAGTAAGGATGGGGATTCGAAGAATGAACAATTTGAGCTATGGTTACGTTAC
mRNA sequenceShow/hide mRNA sequence
ATTCGCCTGCGAAATGCTGTAGGTTCCTTTGAAGAGGTTGACTGCAACAAAGGGAAATACTGTTGTGGCGAGATCCTCAGAGTTCGTGTCTGTTATGATATTTCTAAGGC
ATTAAGAAGGGGAATTAAGTTGAACCTTGATGGACCTATCGGGGGTTTTTGGATTCCTATGAAGTATGAACGTCTCCCTGAGTTCTACTCTTATCGTGGAATGCTAGGCC
ATCATGTTAAAGACTGTGATAATTTTTTTGAAAGTAAGGATGGGGATTCGAAGAATGAACAATTTGAGCTATGGTTACGTTAC
Protein sequenceShow/hide protein sequence
IRLRNAVGSFEEVDCNKGKYCCGEILRVRVCYDISKALRRGIKLNLDGPIGGFWIPMKYERLPEFYSYRGMLGHHVKDCDNFFESKDGDSKNEQFELWLRY