CuGenDBv2

Gene ID	MS006524
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic
Genome location	scaffold404:777951..778106
RNA-Seq Expression	MS006524
Synteny	MS006524
Gene Ontology terms	GO:0019684 - photosynthesis, light reaction (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016655 - oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor (molecular function) GO:0048038 - quinone binding (molecular function) GO:0051287 - NAD binding (molecular function)
InterPro domains	IPR001135 - NADH-quinone oxidoreductase, subunit D IPR022885 - NAD(P)H-quinone oxidoreductase subunit D/H IPR029014 - [NiFe]-hydrogenase, large subunit

Homology

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GenBank top hits

e value

%identity

Alignment

QIT04105.1 NADH dehydrogenase subunit H [Luffa aegyptiaca]

6.8e-19

92.31

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Query:  CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS
        CLDF DYFLT VAEYQKLITQNPIFLERVEGVGIIC EEVINWGLSGPMLR+
Subjt:  CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS

YP_009468918.1 NADH dehydrogenase subunit 7 [Gynostemma compressum]

6.8e-19

92.31

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Query:  CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS
        CLDF DYFLT VAEYQKLITQNPIFLERVEGVGIIC EEVINWGLSGPMLR+
Subjt:  CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS

YP_009751533.1 NADH dehydrogenase subunit H [Thladiantha dubia]

1.1e-19

94.23

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Query:  CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS
        CLDF DYFLTEVAEYQKLITQNPIFLERVEGVGIIC EEVINWGLSGPMLR+
Subjt:  CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS

YP_009752883.1 NADH dehydrogenase subunit H [Baijiania yunnanensis]

6.8e-19

92.31

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Query:  CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS
        CLDF DYFLT VAEYQKLITQNPIFLERVEGVGIIC EEVINWGLSGPMLR+
Subjt:  CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS

YP_009752975.1 NADH dehydrogenase subunit H [Momordica sessilifolia]

6.8e-19

92.31

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Query:  CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS
        CLDF DYFLT VAEYQKLITQNPIFLERVEGVGIIC EEVINWGLSGPMLR+
Subjt:  CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS

TrEMBL top hits

e value

%identity

Alignment

A0A109WZQ2 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

3.3e-19

92.31

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Query:  CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS
        CLDF DYFLT VAEYQKLITQNPIFLERVEGVGIIC EEVINWGLSGPMLR+
Subjt:  CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS

A0A515BLN0 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

3.3e-19

92.31

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Query:  CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS
        CLDF DYFLT VAEYQKLITQNPIFLERVEGVGIIC EEVINWGLSGPMLR+
Subjt:  CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS

A0A6H0EQG6 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

3.3e-19

92.31

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Query:  CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS
        CLDF DYFLT VAEYQKLITQNPIFLERVEGVGIIC EEVINWGLSGPMLR+
Subjt:  CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS

A0A6H0EQP9 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

5.1e-20

94.23

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Query:  CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS
        CLDF DYFLTEVAEYQKLITQNPIFLERVEGVGIIC EEVINWGLSGPMLR+
Subjt:  CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS

A0A6H0ERF6 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

3.3e-19

92.31

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Query:  CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS
        CLDF DYFLT VAEYQKLITQNPIFLERVEGVGIIC EEVINWGLSGPMLR+
Subjt:  CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS

SwissProt top hits

e value

%identity

Alignment

A4QKQ1 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

8.4e-20

86.54

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Query:  CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS
        CLDF DYFLTEV EYQKLIT+NPIFLERVEGVGII  EE INWGLSGPMLR+
Subjt:  CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS

A4QKZ0 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

8.4e-20

86.54

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Query:  CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS
        CLDF DYFLTEV EYQKLIT+NPIFLERVEGVGII  EE INWGLSGPMLR+
Subjt:  CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS

A4QL77 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

8.4e-20

86.54

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Query:  CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS
        CLDF DYFLTEV EYQKLIT+NPIFLERVEGVGII  EE INWGLSGPMLR+
Subjt:  CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS

P56753 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

8.4e-20

86.54

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Query:  CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS
        CLDF DYFLTEV EYQKLIT+NPIFLERVEGVGII  EE INWGLSGPMLR+
Subjt:  CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS

Q4VZL2 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

9.9e-21

90.38

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Query:  CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS
        CLDF DYFLT VAEYQKLITQNPIFLERVEGVGII  EEVINWGLSGPMLR+
Subjt:  CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS

Arabidopsis top hits

e value

%identity

Alignment

ATCG01110.1 NAD(P)H dehydrogenase subunit H

6.0e-21

86.54

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Query:  CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS
        CLDF DYFLTEV EYQKLIT+NPIFLERVEGVGII  EE INWGLSGPMLR+
Subjt:  CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS

Sequences

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CDS sequence

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TGTTTGGATTTCTACGATTATTTTTTGACAGAAGTTGCTGAATATCAAAAACTTATTACACAAAATCCTATTTTTTTAGAACGAGTTGAAGGAGTAGGCATTATTTGTAG
AGAAGAAGTAATAAATTGGGGGTTATCGGGACCAATGCTACGGAGC

mRNA sequence

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TGTTTGGATTTCTACGATTATTTTTTGACAGAAGTTGCTGAATATCAAAAACTTATTACACAAAATCCTATTTTTTTAGAACGAGTTGAAGGAGTAGGCATTATTTGTAG
AGAAGAAGTAATAAATTGGGGGTTATCGGGACCAATGCTACGGAGC

Protein sequence

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CLDFYDYFLTEVAEYQKLITQNPIFLERVEGVGIICREEVINWGLSGPMLRS

MS006524 (gene) of Bitter gourd (TR) v1 genome