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MS006528 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006528
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionclassical arabinogalactan protein 1-like
Genome locationscaffold404:814619..814954
RNA-Seq ExpressionMS006528
SyntenyMS006528
Gene Ontology termsNA
InterPro domainsIPR044959 - Classical arabinogalactan protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061155.1 classical arabinogalactan protein 1-like [Cucumis melo var. makuwa]1.3e-0648.31Show/hide
Query:  SVRFTVLALMALILITSAAAQSP-KKHSHASSPSPAADSPRVSPKSAPSPATGKHSHAAP-------PSSSPSPALPPSSISSPPADAPAPAGNTAASNS
        ++R  V  ++   LI SA AQSP +  S A S SP+  SP+ SP  AP+P++ K   + P       PSSSPSPA  PSSISSPPADAPAP+GN AAS +
Subjt:  SVRFTVLALMALILITSAAAQSP-KKHSHASSPSPAADSPRVSPKSAPSPATGKHSHAAP-------PSSSPSPALPPSSISSPPADAPAPAGNTAASNS

Query:  FAVAGSLFAAICAAAFLM
        F+V GS   A+ A   ++
Subjt:  FAVAGSLFAAICAAAFLM

KAG7030900.1 hypothetical protein SDJN02_04937, partial [Cucurbita argyrosperma subsp. argyrosperma]2.9e-0649.14Show/hide
Query:  SVRFTVLALMALILITSAAAQSP---------KKHSHASSPSPAADSPRVSPKSAPSPATGKHSHAAPPSSSP--SPALPPSSISSPPADAPAPAGNTAA
        ++R  V+ +M  +LI SA AQSP         K  S A S SP+ +SP+ SP +AP+PA+ K S  +PP++SP  SP+  PSSISSPPADAPAP+GN AA
Subjt:  SVRFTVLALMALILITSAAAQSP---------KKHSHASSPSPAADSPRVSPKSAPSPATGKHSHAAPPSSSP--SPALPPSSISSPPADAPAPAGNTAA

Query:  SNSFAVAGSLFAAICA
        S SF++ GS+   + A
Subjt:  SNSFAVAGSLFAAICA

PQQ16428.1 classical arabinogalactan protein 1 [Prunus yedoensis var. nudiflora]8.4e-0644.35Show/hide
Query:  MASVRFTVLALMALILITSAAAQSPKKH---------SHASSPSPAADSPRVSPK--SAPSPATGKHSHAAPPSSSP-SPALPPSSISSPPADAPAPAGN
        MA     VL LMA +L+ S  AQSP             HA++PSP++  P+ SP   S P  A   HS  +PPS+SP SPA+PPSS+S PP++APAPA N
Subjt:  MASVRFTVLALMALILITSAAAQSPKKH---------SHASSPSPAADSPRVSPK--SAPSPATGKHSHAAPPSSSP-SPALPPSSISSPPADAPAPAGN

Query:  TAASNSFAVAGSLFAAICAAAFLM
         A  N F+ AG +     AA  +M
Subjt:  TAASNSFAVAGSLFAAICAAAFLM

XP_022141985.1 classical arabinogalactan protein 1-like [Momordica charantia]1.2e-3692.86Show/hide
Query:  MASVRFTVLALMALILITSAAAQSPKKHSHASSPSPAADSPRVSPKSAPSPATGKHSHAAPPSSSPSPALPPSSISSPPADAPAPAGNTAASNSFAVAGS
        MASVRFTVLALMALILITSAAAQSPKKHSHA+SPSPAADSPRVSPKSAPSPATGKHS A PPSSSPSPALPPSSISSPPADAPA AGNTAASNSFAVAGS
Subjt:  MASVRFTVLALMALILITSAAAQSPKKHSHASSPSPAADSPRVSPKSAPSPATGKHSHAAPPSSSPSPALPPSSISSPPADAPAPAGNTAASNSFAVAGS

Query:  LFAAICAAAFLM
        LF    AAAFLM
Subjt:  LFAAICAAAFLM

XP_023542663.1 classical arabinogalactan protein 1-like [Cucurbita pepo subsp. pepo]6.4e-0646.72Show/hide
Query:  SVRFTVLALMALILITSAAAQSP---------KKHSHASSPSPAADSPRVSPKSAPSPA---TGKHSHAAPPSSSPSPALPPSSISSPPADAPAPAGNTA
        ++R  V+ +M  +LI SA AQSP         K  S A S SP+ +SP+ SP +AP+PA   +     AA PS SPSP+  PSSISSPPADAPAP+GN A
Subjt:  SVRFTVLALMALILITSAAAQSP---------KKHSHASSPSPAADSPRVSPKSAPSPA---TGKHSHAAPPSSSPSPALPPSSISSPPADAPAPAGNTA

Query:  ASNSFAVAGSLFAAICAAAFLM
        AS S ++ GS+ A + A   ++
Subjt:  ASNSFAVAGSLFAAICAAAFLM

TrEMBL top hitse value%identityAlignment
A0A314ZGT3 Classical arabinogalactan protein 14.1e-0644.35Show/hide
Query:  MASVRFTVLALMALILITSAAAQSPKKH---------SHASSPSPAADSPRVSPK--SAPSPATGKHSHAAPPSSSP-SPALPPSSISSPPADAPAPAGN
        MA     VL LMA +L+ S  AQSP             HA++PSP++  P+ SP   S P  A   HS  +PPS+SP SPA+PPSS+S PP++APAPA N
Subjt:  MASVRFTVLALMALILITSAAAQSPKKH---------SHASSPSPAADSPRVSPK--SAPSPATGKHSHAAPPSSSP-SPALPPSSISSPPADAPAPAGN

Query:  TAASNSFAVAGSLFAAICAAAFLM
         A  N F+ AG +     AA  +M
Subjt:  TAASNSFAVAGSLFAAICAAAFLM

A0A5A7V5Q9 Classical arabinogalactan protein 1-like6.3e-0748.31Show/hide
Query:  SVRFTVLALMALILITSAAAQSP-KKHSHASSPSPAADSPRVSPKSAPSPATGKHSHAAP-------PSSSPSPALPPSSISSPPADAPAPAGNTAASNS
        ++R  V  ++   LI SA AQSP +  S A S SP+  SP+ SP  AP+P++ K   + P       PSSSPSPA  PSSISSPPADAPAP+GN AAS +
Subjt:  SVRFTVLALMALILITSAAAQSP-KKHSHASSPSPAADSPRVSPKSAPSPATGKHSHAAP-------PSSSPSPALPPSSISSPPADAPAPAGNTAASNS

Query:  FAVAGSLFAAICAAAFLM
        F+V GS   A+ A   ++
Subjt:  FAVAGSLFAAICAAAFLM

A0A6J1CJM5 classical arabinogalactan protein 1-like5.8e-3792.86Show/hide
Query:  MASVRFTVLALMALILITSAAAQSPKKHSHASSPSPAADSPRVSPKSAPSPATGKHSHAAPPSSSPSPALPPSSISSPPADAPAPAGNTAASNSFAVAGS
        MASVRFTVLALMALILITSAAAQSPKKHSHA+SPSPAADSPRVSPKSAPSPATGKHS A PPSSSPSPALPPSSISSPPADAPA AGNTAASNSFAVAGS
Subjt:  MASVRFTVLALMALILITSAAAQSPKKHSHASSPSPAADSPRVSPKSAPSPATGKHSHAAPPSSSPSPALPPSSISSPPADAPAPAGNTAASNSFAVAGS

Query:  LFAAICAAAFLM
        LF    AAAFLM
Subjt:  LFAAICAAAFLM

A0A6J1FW49 classical arabinogalactan protein 1-like1.2e-0546.28Show/hide
Query:  SVRFTVLALMALILITSAAAQSP---------KKHSHASSPSPAADSPRVSPKSAPSPATGKHSHAAPPSSSP--SPALPPSSISSPPADAPAPAGNTAA
        ++R  V+ +   +LI SA AQSP         K  S A S SP+ +SP+ SP +AP+PA+ K S  +PP++SP  SP+  PSSISSPPADAPAP+GN AA
Subjt:  SVRFTVLALMALILITSAAAQSP---------KKHSHASSPSPAADSPRVSPKSAPSPATGKHSHAAPPSSSP--SPALPPSSISSPPADAPAPAGNTAA

Query:  SNSFAVAGSLFAAICAAAFLM
        S SF++ GS+   + A   ++
Subjt:  SNSFAVAGSLFAAICAAAFLM

A0A6J1JSK4 classical arabinogalactan protein 1-like1.5e-0547.97Show/hide
Query:  MASVRFTVLALMALILITSAAAQSP---------KKHSHASSPSPAADSPRVSPKSAPSPATGKHSHAAPPSSSP--SPALPPSSISSPPADAPAPAGNT
        MA   F V+  +A+ LI SA AQSP         K  S A S SP+  SP+ SP +AP+P T   S  +PP++SP  SP+  PSSISSPPADAPAP+GN+
Subjt:  MASVRFTVLALMALILITSAAAQSP---------KKHSHASSPSPAADSPRVSPKSAPSPATGKHSHAAPPSSSP--SPALPPSSISSPPADAPAPAGNT

Query:  AASNSFAVAGSLFAAICAAAFLM
        AAS S ++ GS+ A + A  F++
Subjt:  AASNSFAVAGSLFAAICAAAFLM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G64310.1 arabinogalactan protein 13.8e-0438.93Show/hide
Query:  MASVRFTVLALMALILITSAAAQSP---------KKHSHASSP---SPAADSPRVSPKSAPSPATGKHSHAAPPS-------SSPSPALPPSSISSPPAD
        MA  +  V  L+A +LI+SA AQSP         ++ S A SP   +  A +P VSP  +P+ A    S A+PPS       ++ SPAL PS+IS  P +
Subjt:  MASVRFTVLALMALILITSAAAQSP---------KKHSHASSP---SPAADSPRVSPKSAPSPATGKHSHAAPPS-------SSPSPALPPSSISSPPAD

Query:  APAPAGNTAASNSFAVAGSLFAAICAAAFLM
        AP PA   A SN FA  GS+   + AA  ++
Subjt:  APAPAGNTAASNSFAVAGSLFAAICAAAFLM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCGTACGATTTACAGTCCTTGCCCTAATGGCGCTGATACTGATAACCTCCGCCGCCGCGCAGTCTCCGAAGAAACATTCGCACGCCTCTTCTCCTTCACCGGC
CGCCGATTCGCCTAGGGTTTCGCCGAAATCCGCGCCGTCGCCGGCCACCGGTAAGCATTCTCACGCTGCTCCGCCTTCGTCTTCTCCGTCACCGGCCCTCCCTCCATCCT
CCATCTCCTCCCCTCCCGCCGATGCTCCGGCTCCTGCCGGAAACACTGCTGCTTCCAATTCTTTCGCCGTCGCCGGTTCTCTCTTCGCCGCCATCTGCGCCGCGGCTTTC
CTCATG
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCGTACGATTTACAGTCCTTGCCCTAATGGCGCTGATACTGATAACCTCCGCCGCCGCGCAGTCTCCGAAGAAACATTCGCACGCCTCTTCTCCTTCACCGGC
CGCCGATTCGCCTAGGGTTTCGCCGAAATCCGCGCCGTCGCCGGCCACCGGTAAGCATTCTCACGCTGCTCCGCCTTCGTCTTCTCCGTCACCGGCCCTCCCTCCATCCT
CCATCTCCTCCCCTCCCGCCGATGCTCCGGCTCCTGCCGGAAACACTGCTGCTTCCAATTCTTTCGCCGTCGCCGGTTCTCTCTTCGCCGCCATCTGCGCCGCGGCTTTC
CTCATG
Protein sequenceShow/hide protein sequence
MASVRFTVLALMALILITSAAAQSPKKHSHASSPSPAADSPRVSPKSAPSPATGKHSHAAPPSSSPSPALPPSSISSPPADAPAPAGNTAASNSFAVAGSLFAAICAAAF
LM