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MS006529 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006529
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionextensin-like
Genome locationscaffold404:824279..824698
RNA-Seq ExpressionMS006529
SyntenyMS006529
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011659717.1 vegetative cell wall protein gp1 [Cucumis sativus]4.5e-1756.34Show/hide
Query:  MPHSALLNALMAAALLASAAA--PRPAPSPSPMATPSPPWRWTPNPKPPPPPTPSSPAPSPSPTTAVVPPAPPTAAPVSPPPQTQSPAPPVTPPPAQAPA
        MPHS LLNAL+AAALL SAAA  P P+PSP+P A+ SPPWRW P  KPP  P      P+PS  T    P+ P  +P S PP      PP   P + +P+
Subjt:  MPHSALLNALMAAALLASAAA--PRPAPSPSPMATPSPPWRWTPNPKPPPPPTPSSPAPSPSPTTAVVPPAPPTAAPVSPPPQTQSPAPPVTPPPAQAPA

Query:  PSWIAGPPADALAPSKHKSNALKNRFSLVGSVGIGAMAAAAL
        P+WIA PP++AL+PSK KS+  KN FS+VGSV IGAMAAAAL
Subjt:  PSWIAGPPADALAPSKHKSNALKNRFSLVGSVGIGAMAAAAL

XP_022141995.1 extensin-like [Momordica charantia]2.2e-4890.21Show/hide
Query:  MAAALLAS-AAAPRPAPSPSPMATPSPPWRWTPNPKPPPPPT------------PSSPAPSPSPTTAVVPPAPPTAAPVSPPPQTQSPAPPVTPPPAQAP
        MAAALLAS AAAPRPAPSPSPMATPSPPWRWTPNPKPP PPT            PSSPAPSPSPTTAVVPPAPPTAAPVSPPPQTQSPAPPVTPPPAQAP
Subjt:  MAAALLAS-AAAPRPAPSPSPMATPSPPWRWTPNPKPPPPPT------------PSSPAPSPSPTTAVVPPAPPTAAPVSPPPQTQSPAPPVTPPPAQAP

Query:  APSWIAGPPADALAPSKHKSNALKNRFSLVGSVGIGAMAAAAL
        APSWIAGPPADALAPSKHKSNALKNRFSLVGSVGIGAMAAAAL
Subjt:  APSWIAGPPADALAPSKHKSNALKNRFSLVGSVGIGAMAAAAL

XP_038887113.1 anther-specific proline-rich protein APG-like [Benincasa hispida]4.5e-1756.86Show/hide
Query:  MPHSALLNALMAAALL-ASAAAPRPAPSPSPM----ATPSPPWRWTPNPKPPPPPTPSSPA-PSPSPTTAVVPPAPPTAAPVSPPPQTQSPAP-PV----
        MPHSALLNAL+AAALL ++AAAP PAPSP+P+    A+PSPPWRWTP  KPPP  TPS  + P+P P++   PP  P+  PV PP    +P   PV    
Subjt:  MPHSALLNALMAAALL-ASAAAPRPAPSPSPM----ATPSPPWRWTPNPKPPPPPTPSSPA-PSPSPTTAVVPPAPPTAAPVSPPPQTQSPAP-PV----

Query:  --TPPPAQAPAPSWIAGPPADALAPSKHKSNALKNRFSLVGSVGIGAMAAAAL
          +P P+ +P+PSWIA PP +A APSK KS+A  NRFS+V SV I AMAAA L
Subjt:  --TPPPAQAPAPSWIAGPPADALAPSKHKSNALKNRFSLVGSVGIGAMAAAAL

TrEMBL top hitse value%identityAlignment
A0A0A0K238 Uncharacterized protein2.2e-1756.34Show/hide
Query:  MPHSALLNALMAAALLASAAA--PRPAPSPSPMATPSPPWRWTPNPKPPPPPTPSSPAPSPSPTTAVVPPAPPTAAPVSPPPQTQSPAPPVTPPPAQAPA
        MPHS LLNAL+AAALL SAAA  P P+PSP+P A+ SPPWRW P  KPP  P      P+PS  T    P+ P  +P S PP      PP   P + +P+
Subjt:  MPHSALLNALMAAALLASAAA--PRPAPSPSPMATPSPPWRWTPNPKPPPPPTPSSPAPSPSPTTAVVPPAPPTAAPVSPPPQTQSPAPPVTPPPAQAPA

Query:  PSWIAGPPADALAPSKHKSNALKNRFSLVGSVGIGAMAAAAL
        P+WIA PP++AL+PSK KS+  KN FS+VGSV IGAMAAAAL
Subjt:  PSWIAGPPADALAPSKHKSNALKNRFSLVGSVGIGAMAAAAL

A0A6J1CJN4 extensin-like1.1e-4890.21Show/hide
Query:  MAAALLAS-AAAPRPAPSPSPMATPSPPWRWTPNPKPPPPPT------------PSSPAPSPSPTTAVVPPAPPTAAPVSPPPQTQSPAPPVTPPPAQAP
        MAAALLAS AAAPRPAPSPSPMATPSPPWRWTPNPKPP PPT            PSSPAPSPSPTTAVVPPAPPTAAPVSPPPQTQSPAPPVTPPPAQAP
Subjt:  MAAALLAS-AAAPRPAPSPSPMATPSPPWRWTPNPKPPPPPT------------PSSPAPSPSPTTAVVPPAPPTAAPVSPPPQTQSPAPPVTPPPAQAP

Query:  APSWIAGPPADALAPSKHKSNALKNRFSLVGSVGIGAMAAAAL
        APSWIAGPPADALAPSKHKSNALKNRFSLVGSVGIGAMAAAAL
Subjt:  APSWIAGPPADALAPSKHKSNALKNRFSLVGSVGIGAMAAAAL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCACTCGGCCCTTCTTAACGCCCTGATGGCGGCGGCGCTGCTCGCCTCTGCCGCCGCTCCCCGGCCGGCACCGTCGCCTTCTCCGATGGCCACCCCTTCACCGCC
CTGGAGATGGACCCCCAATCCAAAGCCTCCCCCACCTCCGACGCCGTCGTCTCCGGCACCGTCTCCATCTCCGACGACAGCCGTGGTTCCGCCGGCACCGCCAACTGCAG
CCCCGGTTTCCCCACCACCGCAGACTCAGAGCCCTGCTCCGCCGGTGACTCCGCCGCCCGCTCAGGCTCCGGCTCCGTCGTGGATCGCCGGTCCGCCGGCAGACGCACTG
GCGCCGTCGAAACATAAGAGCAACGCCTTAAAAAACCGATTCTCGTTGGTCGGATCAGTGGGCATTGGAGCCATGGCTGCTGCTGCTTTA
mRNA sequenceShow/hide mRNA sequence
ATGCCTCACTCGGCCCTTCTTAACGCCCTGATGGCGGCGGCGCTGCTCGCCTCTGCCGCCGCTCCCCGGCCGGCACCGTCGCCTTCTCCGATGGCCACCCCTTCACCGCC
CTGGAGATGGACCCCCAATCCAAAGCCTCCCCCACCTCCGACGCCGTCGTCTCCGGCACCGTCTCCATCTCCGACGACAGCCGTGGTTCCGCCGGCACCGCCAACTGCAG
CCCCGGTTTCCCCACCACCGCAGACTCAGAGCCCTGCTCCGCCGGTGACTCCGCCGCCCGCTCAGGCTCCGGCTCCGTCGTGGATCGCCGGTCCGCCGGCAGACGCACTG
GCGCCGTCGAAACATAAGAGCAACGCCTTAAAAAACCGATTCTCGTTGGTCGGATCAGTGGGCATTGGAGCCATGGCTGCTGCTGCTTTA
Protein sequenceShow/hide protein sequence
MPHSALLNALMAAALLASAAAPRPAPSPSPMATPSPPWRWTPNPKPPPPPTPSSPAPSPSPTTAVVPPAPPTAAPVSPPPQTQSPAPPVTPPPAQAPAPSWIAGPPADAL
APSKHKSNALKNRFSLVGSVGIGAMAAAAL