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MS006543 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006543
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold404:1011931..1012218
RNA-Seq ExpressionMS006543
SyntenyMS006543
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]8.5e-0744.3Show/hide
Query:  LKLNIDAACGANSTELDFLLRDESGHLLAARCQSVPLPYTHLLAELLAIHEGLCFAISLGYSHLTVESDRLTAISLLRG
        +K+N DAAC + ST L  ++RD  G LL A+   +P+P   L AE+  I E L  A S  Y+ L VESD   AI L++G
Subjt:  LKLNIDAACGANSTELDFLLRDESGHLLAARCQSVPLPYTHLLAELLAIHEGLCFAISLGYSHLTVESDRLTAISLLRG

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]2.2e-1047.83Show/hide
Query:  RTTIANW-SSATVGLKLNIDAACGANSTELDFLLRDESGHLLAARCQSVPLPYTHLLAELLAIHEGLCFAISLGYSHLTVESDRLTAISLLR
        R  +  W  S++V LKLN DAAC   ST    ++RD S  L+AA    VP P + LLAE+  I EGL FA +  ++HL VESD L AI L+R
Subjt:  RTTIANW-SSATVGLKLNIDAACGANSTELDFLLRDESGHLLAARCQSVPLPYTHLLAELLAIHEGLCFAISLGYSHLTVESDRLTAISLLR

XP_030942886.1 uncharacterized protein LOC115967872 [Quercus lobata]1.8e-0433.33Show/hide
Query:  NWSSATVGL-KLNIDAAC---GANSTELDFLLRDESGHLLAARCQSVPLPYTHLLAELLAIHEGLCFAISLGYSHLTVESDRLTAIS
        NW++  +G  K+N+D AC   G+  + +  ++RDESG ++AA  +++PL +     E +A+ +G+  A  L  +H+  ESD  + IS
Subjt:  NWSSATVGL-KLNIDAAC---GANSTELDFLLRDESGHLLAARCQSVPLPYTHLLAELLAIHEGLCFAISLGYSHLTVESDRLTAIS

XP_031106138.1 uncharacterized protein LOC116010768 [Ipomoea triloba]8.0e-0537.5Show/hide
Query:  PQQRTTIANWSSATVG-LKLNIDAACGANSTELDF--LLRDESGHLLAARCQSVPLPYTHLLAELLAIHEGLCFAISLGYSHLTVESDRLTAISLL
        P Q      W     G  KLN+DAA  ANS  + F  +LRD++GH  AARC      ++   AE +AI E L +  S    H+ +E+D LT +  L
Subjt:  PQQRTTIANWSSATVG-LKLNIDAACGANSTELDF--LLRDESGHLLAARCQSVPLPYTHLLAELLAIHEGLCFAISLGYSHLTVESDRLTAISLL

XP_038698005.1 uncharacterized protein LOC119995563 [Tripterygium wilfordii]3.9e-0437.08Show/hide
Query:  ANWSSATVGL-KLNIDAACGANS--TELDFLLRDESGHLLAARCQSVPLPYTHLLAELLAIHEGLCFAISLGYSHLTVESDRLTAISLL
        ++WS   +GL K+N DAA  +N   T L  ++RD  G  +AA   S P+ +  LLAE ++    + FA  LG+S + +E D LT I+ +
Subjt:  ANWSSATVGL-KLNIDAACGANS--TELDFLLRDESGHLLAARCQSVPLPYTHLLAELLAIHEGLCFAISLGYSHLTVESDRLTAISLL

TrEMBL top hitse value%identityAlignment
A0A446PGB7 Uncharacterized protein2.5e-0438.55Show/hide
Query:  LKLNIDAAC----GANSTELDFLLRDESGHLLAARCQSVPLPYTHLLAELLAIHEGLCFAISLGYSHLTVESDRLTAISLLRG
        +KLN+DAA     G  +T    ++RDE G  LAA+C+ +P     + +E +A+ +GL  A SLG+  +  ESD LT I+   G
Subjt:  LKLNIDAAC----GANSTELDFLLRDESGHLLAARCQSVPLPYTHLLAELLAIHEGLCFAISLGYSHLTVESDRLTAISLLRG

A0A446VJF4 RNase H domain-containing protein2.5e-0437.04Show/hide
Query:  LKLNIDAACGANS--TELDFLLRDESGHLLAARCQSVPLPYTHLLAELLAIHEGLCFAISLGYSHLTVESDRLTAISLLRG
        +KLN+DAA  A+        +LRD  G+ +AA C+ + +    +  + +A+ +GL FA SLG+S + VESD L  I+   G
Subjt:  LKLNIDAACGANS--TELDFLLRDESGHLLAARCQSVPLPYTHLLAELLAIHEGLCFAISLGYSHLTVESDRLTAISLLRG

A0A6J1BQ49 uncharacterized protein LOC1110047864.1e-0744.3Show/hide
Query:  LKLNIDAACGANSTELDFLLRDESGHLLAARCQSVPLPYTHLLAELLAIHEGLCFAISLGYSHLTVESDRLTAISLLRG
        +K+N DAAC + ST L  ++RD  G LL A+   +P+P   L AE+  I E L  A S  Y+ L VESD   AI L++G
Subjt:  LKLNIDAACGANSTELDFLLRDESGHLLAARCQSVPLPYTHLLAELLAIHEGLCFAISLGYSHLTVESDRLTAISLLRG

A0A6J1DX30 uncharacterized protein LOC1110248741.0e-1047.83Show/hide
Query:  RTTIANW-SSATVGLKLNIDAACGANSTELDFLLRDESGHLLAARCQSVPLPYTHLLAELLAIHEGLCFAISLGYSHLTVESDRLTAISLLR
        R  +  W  S++V LKLN DAAC   ST    ++RD S  L+AA    VP P + LLAE+  I EGL FA +  ++HL VESD L AI L+R
Subjt:  RTTIANW-SSATVGLKLNIDAACGANSTELDFLLRDESGHLLAARCQSVPLPYTHLLAELLAIHEGLCFAISLGYSHLTVESDRLTAISLLR

A0A7N2L6Z9 Reverse transcriptase domain-containing protein1.0e-0535.11Show/hide
Query:  PQQRTTIANWSSATVGL-KLNIDAACG---ANSTELDFLLRDESGHLLAARCQSVPLPYTHLLAELLAIHEGLCFAISLGYSHLTVESDRLTAI
        P  ++T+  WS+   G+ K+N+D AC      S+ +  ++RDESG ++AA C+ +P  +     EL AI +GL  A  +    + +ESD L+AI
Subjt:  PQQRTTIANWSSATVGL-KLNIDAACG---ANSTELDFLLRDESGHLLAARCQSVPLPYTHLLAELLAIHEGLCFAISLGYSHLTVESDRLTAI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCTCCGCAACAGAGAACAACAATTGCCAATTGGAGTTCGGCCACGGTAGGGCTGAAATTAAATATTGATGCTGCGTGTGGAGCTAATTCGACTGAGTTAGACTTCCTTCT
TCGTGATGAATCTGGCCATTTATTGGCAGCGAGATGTCAGTCTGTACCTCTTCCTTACACACATTTACTTGCTGAGCTTCTGGCCATTCATGAAGGTCTCTGCTTTGCAA
TTTCTCTGGGCTATTCACATTTAACAGTTGAATCGGACCGTCTCACCGCCATTTCTCTTCTTCGAGGT
mRNA sequenceShow/hide mRNA sequence
GCTCCGCAACAGAGAACAACAATTGCCAATTGGAGTTCGGCCACGGTAGGGCTGAAATTAAATATTGATGCTGCGTGTGGAGCTAATTCGACTGAGTTAGACTTCCTTCT
TCGTGATGAATCTGGCCATTTATTGGCAGCGAGATGTCAGTCTGTACCTCTTCCTTACACACATTTACTTGCTGAGCTTCTGGCCATTCATGAAGGTCTCTGCTTTGCAA
TTTCTCTGGGCTATTCACATTTAACAGTTGAATCGGACCGTCTCACCGCCATTTCTCTTCTTCGAGGT
Protein sequenceShow/hide protein sequence
APQQRTTIANWSSATVGLKLNIDAACGANSTELDFLLRDESGHLLAARCQSVPLPYTHLLAELLAIHEGLCFAISLGYSHLTVESDRLTAISLLRG