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MS006547 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006547
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzf-RVT domain-containing protein
Genome locationscaffold404:1048921..1049118
RNA-Seq ExpressionMS006547
SyntenyMS006547
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.4e-0543.94Show/hide
Query:  QKRKYFDLASPHGKLNTADRVKKRCTYRTFNPNCCMLCLKAGEDHYHMFFNCSYSRIIW---KAML
        +K K+F     HG +NTADR++KR    T +PN C +C K+ ED  H+F +C YS+ +W   KA+L
Subjt:  QKRKYFDLASPHGKLNTADRVKKRCTYRTFNPNCCMLCLKAGEDHYHMFFNCSYSRIIW---KAML

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.9e-0544.07Show/hide
Query:  QKRKYFDLASPHGKLNTADRVKKRCTYRTFNPNCCMLCLKAGEDHYHMFFNCSYSRIIW
        +K K+F     HG +NTADR++KR    T +PN C +C K+ ED  H+F +C YS+ +W
Subjt:  QKRKYFDLASPHGKLNTADRVKKRCTYRTFNPNCCMLCLKAGEDHYHMFFNCSYSRIIW

KAA0044451.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.5e-0542.42Show/hide
Query:  QKRKYFDLASPHGKLNTADRVKKRCTYRTFNPNCCMLCLKAGEDHYHMFFNCSYSRIIW---KAML
        +K K+F     HG +NTADR++KR      +PN C +C K+ ED  H+F +C YS+ +W   KA+L
Subjt:  QKRKYFDLASPHGKLNTADRVKKRCTYRTFNPNCCMLCLKAGEDHYHMFFNCSYSRIIW---KAML

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.9e-0544.07Show/hide
Query:  QKRKYFDLASPHGKLNTADRVKKRCTYRTFNPNCCMLCLKAGEDHYHMFFNCSYSRIIW
        +K K+F     HG +NTADR++KR    T +PN C +C K+ ED  H+F +C YS+ +W
Subjt:  QKRKYFDLASPHGKLNTADRVKKRCTYRTFNPNCCMLCLKAGEDHYHMFFNCSYSRIIW

TYK29578.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.5e-0542.42Show/hide
Query:  QKRKYFDLASPHGKLNTADRVKKRCTYRTFNPNCCMLCLKAGEDHYHMFFNCSYSRIIW---KAML
        +K K+F     HG +NTADR++KR      +PN C +C K+ ED  H+F +C YS+ +W   KA+L
Subjt:  QKRKYFDLASPHGKLNTADRVKKRCTYRTFNPNCCMLCLKAGEDHYHMFFNCSYSRIIW---KAML

TrEMBL top hitse value%identityAlignment
A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein7.0e-0643.94Show/hide
Query:  QKRKYFDLASPHGKLNTADRVKKRCTYRTFNPNCCMLCLKAGEDHYHMFFNCSYSRIIW---KAML
        +K K+F     HG +NTADR++KR    T +PN C +C K+ ED  H+F +C YS+ +W   KA+L
Subjt:  QKRKYFDLASPHGKLNTADRVKKRCTYRTFNPNCCMLCLKAGEDHYHMFFNCSYSRIIW---KAML

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein9.1e-0644.07Show/hide
Query:  QKRKYFDLASPHGKLNTADRVKKRCTYRTFNPNCCMLCLKAGEDHYHMFFNCSYSRIIW
        +K K+F     HG +NTADR++KR    T +PN C +C K+ ED  H+F +C YS+ +W
Subjt:  QKRKYFDLASPHGKLNTADRVKKRCTYRTFNPNCCMLCLKAGEDHYHMFFNCSYSRIIW

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein9.1e-0644.07Show/hide
Query:  QKRKYFDLASPHGKLNTADRVKKRCTYRTFNPNCCMLCLKAGEDHYHMFFNCSYSRIIW
        +K K+F     HG +NTADR++KR    T +PN C +C K+ ED  H+F +C YS+ +W
Subjt:  QKRKYFDLASPHGKLNTADRVKKRCTYRTFNPNCCMLCLKAGEDHYHMFFNCSYSRIIW

A0A5A7TSA7 LINE-1 retrotransposable element ORF2 protein2.6e-0542.42Show/hide
Query:  QKRKYFDLASPHGKLNTADRVKKRCTYRTFNPNCCMLCLKAGEDHYHMFFNCSYSRIIW---KAML
        +K K+F     HG +NTADR++KR      +PN C +C K+ ED  H+F +C YS+ +W   KA+L
Subjt:  QKRKYFDLASPHGKLNTADRVKKRCTYRTFNPNCCMLCLKAGEDHYHMFFNCSYSRIIW---KAML

A0A5D3E1E3 LINE-1 retrotransposable element ORF2 protein2.6e-0542.42Show/hide
Query:  QKRKYFDLASPHGKLNTADRVKKRCTYRTFNPNCCMLCLKAGEDHYHMFFNCSYSRIIW---KAML
        +K K+F     HG +NTADR++KR      +PN C +C K+ ED  H+F +C YS+ +W   KA+L
Subjt:  QKRKYFDLASPHGKLNTADRVKKRCTYRTFNPNCCMLCLKAGEDHYHMFFNCSYSRIIW---KAML

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CAGAAAAGAAAATATTTTGATTTGGCTAGTCCACATGGAAAGCTAAACACAGCCGACAGAGTAAAAAAAAGATGTACATATCGGACATTTAACCCTAACTGTTGTATGTT
ATGCTTAAAAGCCGGGGAGGATCATTATCATATGTTCTTCAATTGTTCCTACAGCAGAATAATATGGAAAGCTATGCTTCCGAGCTTT
mRNA sequenceShow/hide mRNA sequence
CAGAAAAGAAAATATTTTGATTTGGCTAGTCCACATGGAAAGCTAAACACAGCCGACAGAGTAAAAAAAAGATGTACATATCGGACATTTAACCCTAACTGTTGTATGTT
ATGCTTAAAAGCCGGGGAGGATCATTATCATATGTTCTTCAATTGTTCCTACAGCAGAATAATATGGAAAGCTATGCTTCCGAGCTTT
Protein sequenceShow/hide protein sequence
QKRKYFDLASPHGKLNTADRVKKRCTYRTFNPNCCMLCLKAGEDHYHMFFNCSYSRIIWKAMLPSF