; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS006562 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006562
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold404:1320735..1321160
RNA-Seq ExpressionMS006562
SyntenyMS006562
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMO58663.1 reverse transcriptase [Corchorus capsularis]3.4e-1235.29Show/hide
Query:  WILPTPFLWKLNFDSTWIDSLNTGGVGWMVRDWEGHLILAGCQHLQRKWPIKALEILAILEGLE-AMKHLCTFEAGIKVQVESDCLEAVNIINNYSVELT
        WI P+P  WK+N D+++  S    G+G ++RD+EG ++++G + L         E+ AIL G E A++H  T     +  +ESD L A++ IN     L 
Subjt:  WILPTPFLWKLNFDSTWIDSLNTGGVGWMVRDWEGHLILAGCQHLQRKWPIKALEILAILEGLE-AMKHLCTFEAGIKVQVESDCLEAVNIINNYSVELT

Query:  ETSLLAEDIQKVADFMPIEGFHHISRKVNGVAHNLA
        E  LL E+I+++A       F  ++R+ N VAH+LA
Subjt:  ETSLLAEDIQKVADFMPIEGFHHISRKVNGVAHNLA

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]6.4e-1939.86Show/hide
Query:  WILPTPFLWKLNFDSTWIDSLNTGGVGWMVRDWEGHLILAGCQHLQRKWPIKALEILAILEGLEAMKHLCTFEAGIKVQVESDCLEAVNIINNYSVELTE
        W  PT   WKLN ++ W    NTGG+GW++RD +G +I A C+ ++ +  I  LE++AI EGL A++     E    + +ESD LEA+++++    + TE
Subjt:  WILPTPFLWKLNFDSTWIDSLNTGGVGWMVRDWEGHLILAGCQHLQRKWPIKALEILAILEGLEAMKHLCTFEAGIKVQVESDCLEAVNIINNYSVELTE

Query:  TSLLAEDIQKVADFMPIEGFHHISRKVNGVAHNLARKA
           L E+I ++   M I    HISR+ N VAH LAR+A
Subjt:  TSLLAEDIQKVADFMPIEGFHHISRKVNGVAHNLARKA

XP_022148549.1 uncharacterized protein LOC111017181 [Momordica charantia]2.8e-3050.36Show/hide
Query:  WILPTPFLWKLNFDSTWIDSLNTGGVGWMVRDWEGHLILAGCQHLQRKWPIKALEILAILEGLEAMKHLCTFEAGIKVQVESDCLEAVNIINNYSVELTE
        W  P   LWKLN D+TW+DSL+ GG+GW+VRD EG  I+A C                    L+A+    T EAGIK+++ESDCLE VNIIN  S+ LTE
Subjt:  WILPTPFLWKLNFDSTWIDSLNTGGVGWMVRDWEGHLILAGCQHLQRKWPIKALEILAILEGLEAMKHLCTFEAGIKVQVESDCLEAVNIINNYSVELTE

Query:  TSLLAEDIQKVADFMPIEGFHHISRKVNGVAHNLARKAC
         SL+ EDI K  + +PIEGF H+  K NGVAH +AR+AC
Subjt:  TSLLAEDIQKVADFMPIEGFHHISRKVNGVAHNLARKAC

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]3.2e-1835.51Show/hide
Query:  WILPTPFLWKLNFDSTWIDSLNTGGVGWMVRDWEGHLILAGCQHLQRKWPIKALEILAILEGLEAMKHLCTFEAGIKVQVESDCLEAVNIINNYSVELTE
        W  P   +W LN D++W DS + GG+GW++R W+G ++LAG + ++    +K LE  AILEGL  + +L        + +E+D  E  +++N    +LT+
Subjt:  WILPTPFLWKLNFDSTWIDSLNTGGVGWMVRDWEGHLILAGCQHLQRKWPIKALEILAILEGLEAMKHLCTFEAGIKVQVESDCLEAVNIINNYSVELTE

Query:  TSLLAEDIQKVADFMPIEGFHHISRKVNGVAHNLARKA
        T  + E+I  + D   I  F  + R+ NG AH+LA++A
Subjt:  TSLLAEDIQKVADFMPIEGFHHISRKVNGVAHNLARKA

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]8.4e-1939.44Show/hide
Query:  WILPTPFLWKLNFDSTWIDSLNTGGVGWMVRDWEGHLILAGCQHLQRKWPIKALEILAILEGLEAMK----HLCTFEAGIKVQVESDCLEAVNIINNYSV
        W  PT   WKLN D+ W    NTGG+GW++RD +G +I A C+ ++ +  I  LE++AI EGL A++         E    + +ESD LEA+++++    
Subjt:  WILPTPFLWKLNFDSTWIDSLNTGGVGWMVRDWEGHLILAGCQHLQRKWPIKALEILAILEGLEAMK----HLCTFEAGIKVQVESDCLEAVNIINNYSV

Query:  ELTETSLLAEDIQKVADFMPIEGFHHISRKVNGVAHNLARKA
        + TE   L E+I ++ + M I    HISR+ N VAH+LAR+A
Subjt:  ELTETSLLAEDIQKVADFMPIEGFHHISRKVNGVAHNLARKA

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134123.1e-1939.86Show/hide
Query:  WILPTPFLWKLNFDSTWIDSLNTGGVGWMVRDWEGHLILAGCQHLQRKWPIKALEILAILEGLEAMKHLCTFEAGIKVQVESDCLEAVNIINNYSVELTE
        W  PT   WKLN ++ W    NTGG+GW++RD +G +I A C+ ++ +  I  LE++AI EGL A++     E    + +ESD LEA+++++    + TE
Subjt:  WILPTPFLWKLNFDSTWIDSLNTGGVGWMVRDWEGHLILAGCQHLQRKWPIKALEILAILEGLEAMKHLCTFEAGIKVQVESDCLEAVNIINNYSVELTE

Query:  TSLLAEDIQKVADFMPIEGFHHISRKVNGVAHNLARKA
           L E+I ++   M I    HISR+ N VAH LAR+A
Subjt:  TSLLAEDIQKVADFMPIEGFHHISRKVNGVAHNLARKA

A0A6J1D4B6 uncharacterized protein LOC1110171811.3e-3050.36Show/hide
Query:  WILPTPFLWKLNFDSTWIDSLNTGGVGWMVRDWEGHLILAGCQHLQRKWPIKALEILAILEGLEAMKHLCTFEAGIKVQVESDCLEAVNIINNYSVELTE
        W  P   LWKLN D+TW+DSL+ GG+GW+VRD EG  I+A C                    L+A+    T EAGIK+++ESDCLE VNIIN  S+ LTE
Subjt:  WILPTPFLWKLNFDSTWIDSLNTGGVGWMVRDWEGHLILAGCQHLQRKWPIKALEILAILEGLEAMKHLCTFEAGIKVQVESDCLEAVNIINNYSVELTE

Query:  TSLLAEDIQKVADFMPIEGFHHISRKVNGVAHNLARKAC
         SL+ EDI K  + +PIEGF H+  K NGVAH +AR+AC
Subjt:  TSLLAEDIQKVADFMPIEGFHHISRKVNGVAHNLARKAC

A0A6J1D5W1 uncharacterized protein LOC1110173291.8e-1131.54Show/hide
Query:  WKLNFDSTWIDSLNTGGVGWMVRDWEGHLILAGCQHLQRKWPIKALEILAILEGLEAMKHLCTFEAGIKVQVESDCLEAVNIINNYSVELTETSLLAEDI
        WKLN D+ W  +   GG+GW++R+ +  +  AG Q +     I  LE++AI  G+EA+       + + + +ES+ LEA+++I      +TE   L +DI
Subjt:  WKLNFDSTWIDSLNTGGVGWMVRDWEGHLILAGCQHLQRKWPIKALEILAILEGLEAMKHLCTFEAGIKVQVESDCLEAVNIINNYSVELTETSLLAEDI

Query:  QKVADFMPIEGFHHISRKVNGVAHNLARKA
        +   +   ++ F H+ R  N VA  +A +A
Subjt:  QKVADFMPIEGFHHISRKVNGVAHNLARKA

A0A6J1DNV9 uncharacterized protein LOC1110224031.5e-1835.51Show/hide
Query:  WILPTPFLWKLNFDSTWIDSLNTGGVGWMVRDWEGHLILAGCQHLQRKWPIKALEILAILEGLEAMKHLCTFEAGIKVQVESDCLEAVNIINNYSVELTE
        W  P   +W LN D++W DS + GG+GW++R W+G ++LAG + ++    +K LE  AILEGL  + +L        + +E+D  E  +++N    +LT+
Subjt:  WILPTPFLWKLNFDSTWIDSLNTGGVGWMVRDWEGHLILAGCQHLQRKWPIKALEILAILEGLEAMKHLCTFEAGIKVQVESDCLEAVNIINNYSVELTE

Query:  TSLLAEDIQKVADFMPIEGFHHISRKVNGVAHNLARKA
        T  + E+I  + D   I  F  + R+ NG AH+LA++A
Subjt:  TSLLAEDIQKVADFMPIEGFHHISRKVNGVAHNLARKA

A0A6J1DSV1 uncharacterized protein LOC1110236084.1e-1939.44Show/hide
Query:  WILPTPFLWKLNFDSTWIDSLNTGGVGWMVRDWEGHLILAGCQHLQRKWPIKALEILAILEGLEAMK----HLCTFEAGIKVQVESDCLEAVNIINNYSV
        W  PT   WKLN D+ W    NTGG+GW++RD +G +I A C+ ++ +  I  LE++AI EGL A++         E    + +ESD LEA+++++    
Subjt:  WILPTPFLWKLNFDSTWIDSLNTGGVGWMVRDWEGHLILAGCQHLQRKWPIKALEILAILEGLEAMK----HLCTFEAGIKVQVESDCLEAVNIINNYSV

Query:  ELTETSLLAEDIQKVADFMPIEGFHHISRKVNGVAHNLARKA
        + TE   L E+I ++ + M I    HISR+ N VAH+LAR+A
Subjt:  ELTETSLLAEDIQKVADFMPIEGFHHISRKVNGVAHNLARKA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G02650.1 Ribonuclease H-like superfamily protein3.3e-0529.93Show/hide
Query:  PTPFLW-KLNFDSTWIDSLNTGGVGWMVRDWEGHLILAGCQHLQRKWPIKALEILAILEGLEAMKHLCTFEAGIK-VQVESDCLEAVNIINNYSVELTET
        P P  W K NFDS +         GW +R+  GH++L G   LQ        E L  L  L+ +     +  G++ V  ESD    V +INN      + 
Subjt:  PTPFLW-KLNFDSTWIDSLNTGGVGWMVRDWEGHLILAGCQHLQRKWPIKALEILAILEGLEAMKHLCTFEAGIK-VQVESDCLEAVNIINNYSVELTET

Query:  SLLAEDIQKVADFM---PIEGFHHISRKVNGVAHNLA
        SLL   I  +  +M   P      ++R+ N  A  LA
Subjt:  SLLAEDIQKVADFM---PIEGFHHISRKVNGVAHNLA

AT4G09775.1 BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT2G02650.1)3.3e-0532.81Show/hide
Query:  WILPTPFLWKLNFDSTWIDSLNTGGVGWMVRDWEGHLILAGCQHLQRKWPIKALEILAILEGLE
        W  P     K NFDS ++   +     W++RD  GH+I +GC  LQ+ +     E L  L  L+
Subjt:  WILPTPFLWKLNFDSTWIDSLNTGGVGWMVRDWEGHLILAGCQHLQRKWPIKALEILAILEGLE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGGATTCTCCCGACACCCTTTCTATGGAAGCTCAATTTTGACAGTACTTGGATAGACTCTTTGAACACAGGAGGAGTTGGGTGGATGGTTCGTGACTGGGAAGGGCATCT
CATTCTGGCCGGTTGTCAACATCTACAACGGAAATGGCCTATTAAAGCTTTGGAAATTCTTGCAATTTTAGAAGGGCTCGAAGCGATGAAACATTTGTGTACCTTTGAGG
CTGGAATCAAAGTTCAAGTGGAATCAGATTGCTTGGAAGCCGTGAACATCATCAACAATTACTCTGTGGAGCTAACTGAGACCTCTTTGTTGGCGGAAGATATCCAGAAG
GTGGCGGATTTCATGCCAATTGAAGGTTTTCACCACATTTCGAGGAAGGTGAACGGAGTAGCACACAACTTGGCGAGGAAAGCATGCGCAGAGGGT
mRNA sequenceShow/hide mRNA sequence
TGGATTCTCCCGACACCCTTTCTATGGAAGCTCAATTTTGACAGTACTTGGATAGACTCTTTGAACACAGGAGGAGTTGGGTGGATGGTTCGTGACTGGGAAGGGCATCT
CATTCTGGCCGGTTGTCAACATCTACAACGGAAATGGCCTATTAAAGCTTTGGAAATTCTTGCAATTTTAGAAGGGCTCGAAGCGATGAAACATTTGTGTACCTTTGAGG
CTGGAATCAAAGTTCAAGTGGAATCAGATTGCTTGGAAGCCGTGAACATCATCAACAATTACTCTGTGGAGCTAACTGAGACCTCTTTGTTGGCGGAAGATATCCAGAAG
GTGGCGGATTTCATGCCAATTGAAGGTTTTCACCACATTTCGAGGAAGGTGAACGGAGTAGCACACAACTTGGCGAGGAAAGCATGCGCAGAGGGT
Protein sequenceShow/hide protein sequence
WILPTPFLWKLNFDSTWIDSLNTGGVGWMVRDWEGHLILAGCQHLQRKWPIKALEILAILEGLEAMKHLCTFEAGIKVQVESDCLEAVNIINNYSVELTETSLLAEDIQK
VADFMPIEGFHHISRKVNGVAHNLARKACAEG