; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS006612 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006612
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description60S ribosomal protein L44
Genome locationscaffold482:91035..91784
RNA-Seq ExpressionMS006612
SyntenyMS006612
Gene Ontology termsGO:0110165 - cellular anatomical structure (cellular component)
InterPro domainsIPR040411 - Uncharacterized protein At5g23160-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052773.1 60S ribosomal protein L44 [Cucumis melo var. makuwa]5.4e-3746.75Show/hide
Query:  MAETSDKIPPPNRRLHFLLRCFGSSPKIRTGKDPATVKPTTGRRNRRILWLRSRFKKSSATVPVDTAVPEITDCCHDEGFSSPKLKKPAPIKSKAPAVPA
        MA++S K PP      FL  CF SS K+   K P+++ P    RNRR   L  RFKKSSATVPVD A P      HDE   SP  KKP P+    P  P 
Subjt:  MAETSDKIPPPNRRLHFLLRCFGSSPKIRTGKDPATVKPTTGRRNRRILWLRSRFKKSSATVPVDTAVPEITDCCHDEGFSSPKLKKPAPIKSKAPAVPA

Query:  YATESTRPSRLRT-KASQTRKNTESTRSDSTAGNLPSATRTASLLHSVSLPARRLNRQKDLKKAVSQIHAGATAPAPKPSTNSPAKFDLSVKTN-PRKKF
           E    S   + K SQTRK  EST+S+ T   L    + A+ LHSVS P++ L RQKD K++VS+ H  A      P+ +   K    + TN P K  
Subjt:  YATESTRPSRLRT-KASQTRKNTESTRSDSTAGNLPSATRTASLLHSVSLPARRLNRQKDLKKAVSQIHAGATAPAPKPSTNSPAKFDLSVKTN-PRKKF

Query:  DPVIIMSAVAITVLWGRLCAILCTAALFYLGRRLSSVIEPDGGGER
        D VI++  VAI VLWGRLCAILCT ALFYLGRR+ S +E  GGG R
Subjt:  DPVIIMSAVAITVLWGRLCAILCTAALFYLGRRLSSVIEPDGGGER

KAG6581554.1 hypothetical protein SDJN03_21556, partial [Cucurbita argyrosperma subsp. sororia]1.7e-3044.88Show/hide
Query:  MAETSDKIPPPNRRLHFLLRCFGSSPKIRTGKDPATVKPTTGRRNRRILWLRSRFKKSSATVPVDTAVPEITDCCHDEGFSSPKLK-KPAPIKSKAPAVP
        MAE+SDK      RLHFL RCF SSP ++  K      P     NRR   LR RFKKSSATVP+D AVP     CHDE   SP+    P P   K   + 
Subjt:  MAETSDKIPPPNRRLHFLLRCFGSSPKIRTGKDPATVKPTTGRRNRRILWLRSRFKKSSATVPVDTAVPEITDCCHDEGFSSPKLK-KPAPIKSKAPAVP

Query:  AYATESTRPSRLRTKASQTRKN--TESTRSDSTAGNLPSATRTASLLHSVSLPARRLNRQKDLKKAVSQIHAGATAPAPKPSTNSPAKFDLSVKTN-PRK
            ++ +PS+ R K+  T+ N  +EST+SDSTA       +T+  LHS          +K LKK++S +   A A     +T+ P+       TN P K
Subjt:  AYATESTRPSRLRTKASQTRKN--TESTRSDSTAGNLPSATRTASLLHSVSLPARRLNRQKDLKKAVSQIHAGATAPAPKPSTNSPAKFDLSVKTN-PRK

Query:  KFDPVIIMSAVAITVLWGRLCAILCTAALFYLGRRLSSVIE----PDGGGERSR
        KFD VI++ AVAI VLWGRLCAILCTAALFYL R L S  E     DGGG   R
Subjt:  KFDPVIIMSAVAITVLWGRLCAILCTAALFYLGRRLSSVIE----PDGGGERSR

KAG6606901.1 60S ribosomal protein L44, partial [Cucurbita argyrosperma subsp. sororia]4.6e-5255.28Show/hide
Query:  MAETSDKIPPPNRRLHFLLRCFGSSPKIRTGKDPATVKPTTGRRNRRILWLRSRFKKSSATVPVDTAVPEITDCCHDEGFSSPKLKKPAP---IKSKAPA
        MAE S+K+ P  R LHFLLRCFGSSPK++T K+     PTTGR + RI   R RFKKSSATVP+D AVPEIT  C D+   SP+ KKP P   IKS+AP 
Subjt:  MAETSDKIPPPNRRLHFLLRCFGSSPKIRTGKDPATVKPTTGRRNRRILWLRSRFKKSSATVPVDTAVPEITDCCHDEGFSSPKLKKPAP---IKSKAPA

Query:  VPAYATESTRPSRLRTKASQTRKNTESTRSDSTAGNLPSATRTASLLHSVSLPARRLNRQKDLKKAVSQIHAGATAPAPKPSTNSPAKFDLSVKTNPRKK
        V     E  +P       SQT K TESTR DS    L  A RTA+LLHS+SLP+RRLNRQKDLKK VS + A  T          PA  D +   +P K 
Subjt:  VPAYATESTRPSRLRTKASQTRKNTESTRSDSTAGNLPSATRTASLLHSVSLPARRLNRQKDLKKAVSQIHAGATAPAPKPSTNSPAKFDLSVKTNPRKK

Query:  FDPVIIMSAVAITVLWGRLCAILCTAALFYLGRRLSSVIEPDGGGE
         D +I++ AVAI VLWG+LCAILCT ALFY  RRL S  E +GGGE
Subjt:  FDPVIIMSAVAITVLWGRLCAILCTAALFYLGRRLSSVIEPDGGGE

KGN58547.1 hypothetical protein Csa_002056 [Cucumis sativus]2.4e-3747.74Show/hide
Query:  MAETSDKIPPPNRRLHFLLRCFGSSPKIRTGKDPATVKPTTGRRNRRILWLRSRFKKSSATVPVDTAVPEITDCCHDEGFSSPKLKKPAPIKSKAPAVPA
        MA++S+ IPP    LHFL  CF SS K+ T K  +++ P   R + R      RFKKSSATVPVD A P      HDE    P+ KK  P+    P  P 
Subjt:  MAETSDKIPPPNRRLHFLLRCFGSSPKIRTGKDPATVKPTTGRRNRRILWLRSRFKKSSATVPVDTAVPEITDCCHDEGFSSPKLKKPAPIKSKAPAVPA

Query:  YATESTRPSRLRTKASQTRKNTESTRSDSTAGNLPSATRTASLLHSVSLPARRLNRQKDLKKAVSQIHAGATAPAPKPSTNSPAKFDLSVKT-NPRKKFD
           E    S L  K SQTRK   ST+S+ T   L    +TA+LLHSVSLP+++L RQK  KK VS  H  A      P+ +   K    + T  P K FD
Subjt:  YATESTRPSRLRTKASQTRKNTESTRSDSTAGNLPSATRTASLLHSVSLPARRLNRQKDLKKAVSQIHAGATAPAPKPSTNSPAKFDLSVKT-NPRKKFD

Query:  PVIIMSAVAITVLWGRLCAILCTAALFYLGRRLSSVIEPDGGG
         VI++  VAI +LWGRLCAILCT ALFYLGRR+ S IEPDGGG
Subjt:  PVIIMSAVAITVLWGRLCAILCTAALFYLGRRLSSVIEPDGGG

XP_022949237.1 uncharacterized protein LOC111452650 [Cucurbita moschata]1.0e-5154.51Show/hide
Query:  MAETSDKIPPPNRRLHFLLRCFGSSPKIRTGKDPATVKPTTGRRNRRILWLRSRFKKSSATVPVDTAVPEITDCCHDEGFSSPKLKKPAP---IKSKAPA
        MAE S+K+ P  R LHFLLRCFGSSPK++T K+     PTTGRR+ RI   R RFKKSSATVP+D AVPEIT  C D+   SP+ KKP P   IKS+AP 
Subjt:  MAETSDKIPPPNRRLHFLLRCFGSSPKIRTGKDPATVKPTTGRRNRRILWLRSRFKKSSATVPVDTAVPEITDCCHDEGFSSPKLKKPAP---IKSKAPA

Query:  VPAYATESTRPSRLRTKASQTRKNTESTRSDSTAGNLPSATRTASLLHSVSLPARRLNRQKDLKKAVSQIHAGAT---------APAPKPSTNSPAKFDL
        V     E  +P       SQ  K TESTRSD     L  A RTA+LLHS+SLP+RRLNRQKD KK VS + A  T          PA KP  NSPAK   
Subjt:  VPAYATESTRPSRLRTKASQTRKNTESTRSDSTAGNLPSATRTASLLHSVSLPARRLNRQKDLKKAVSQIHAGAT---------APAPKPSTNSPAKFDL

Query:  SVKTNPRKKFDPVIIMSAVAITVLWGRLCAILCTAALFYLGRRLSSVIEPDGGGE
                  D +I++ AVAI VLWG+LCAILCT ALFY  RRL S  E +GGGE
Subjt:  SVKTNPRKKFDPVIIMSAVAITVLWGRLCAILCTAALFYLGRRLSSVIEPDGGGE

TrEMBL top hitse value%identityAlignment
A0A0A0LCZ2 Uncharacterized protein1.2e-3747.74Show/hide
Query:  MAETSDKIPPPNRRLHFLLRCFGSSPKIRTGKDPATVKPTTGRRNRRILWLRSRFKKSSATVPVDTAVPEITDCCHDEGFSSPKLKKPAPIKSKAPAVPA
        MA++S+ IPP    LHFL  CF SS K+ T K  +++ P   R + R      RFKKSSATVPVD A P      HDE    P+ KK  P+    P  P 
Subjt:  MAETSDKIPPPNRRLHFLLRCFGSSPKIRTGKDPATVKPTTGRRNRRILWLRSRFKKSSATVPVDTAVPEITDCCHDEGFSSPKLKKPAPIKSKAPAVPA

Query:  YATESTRPSRLRTKASQTRKNTESTRSDSTAGNLPSATRTASLLHSVSLPARRLNRQKDLKKAVSQIHAGATAPAPKPSTNSPAKFDLSVKT-NPRKKFD
           E    S L  K SQTRK   ST+S+ T   L    +TA+LLHSVSLP+++L RQK  KK VS  H  A      P+ +   K    + T  P K FD
Subjt:  YATESTRPSRLRTKASQTRKNTESTRSDSTAGNLPSATRTASLLHSVSLPARRLNRQKDLKKAVSQIHAGATAPAPKPSTNSPAKFDLSVKT-NPRKKFD

Query:  PVIIMSAVAITVLWGRLCAILCTAALFYLGRRLSSVIEPDGGG
         VI++  VAI +LWGRLCAILCT ALFYLGRR+ S IEPDGGG
Subjt:  PVIIMSAVAITVLWGRLCAILCTAALFYLGRRLSSVIEPDGGG

A0A5A7UA28 60S ribosomal protein L442.6e-3746.75Show/hide
Query:  MAETSDKIPPPNRRLHFLLRCFGSSPKIRTGKDPATVKPTTGRRNRRILWLRSRFKKSSATVPVDTAVPEITDCCHDEGFSSPKLKKPAPIKSKAPAVPA
        MA++S K PP      FL  CF SS K+   K P+++ P    RNRR   L  RFKKSSATVPVD A P      HDE   SP  KKP P+    P  P 
Subjt:  MAETSDKIPPPNRRLHFLLRCFGSSPKIRTGKDPATVKPTTGRRNRRILWLRSRFKKSSATVPVDTAVPEITDCCHDEGFSSPKLKKPAPIKSKAPAVPA

Query:  YATESTRPSRLRT-KASQTRKNTESTRSDSTAGNLPSATRTASLLHSVSLPARRLNRQKDLKKAVSQIHAGATAPAPKPSTNSPAKFDLSVKTN-PRKKF
           E    S   + K SQTRK  EST+S+ T   L    + A+ LHSVS P++ L RQKD K++VS+ H  A      P+ +   K    + TN P K  
Subjt:  YATESTRPSRLRT-KASQTRKNTESTRSDSTAGNLPSATRTASLLHSVSLPARRLNRQKDLKKAVSQIHAGATAPAPKPSTNSPAKFDLSVKTN-PRKKF

Query:  DPVIIMSAVAITVLWGRLCAILCTAALFYLGRRLSSVIEPDGGGER
        D VI++  VAI VLWGRLCAILCT ALFYLGRR+ S +E  GGG R
Subjt:  DPVIIMSAVAITVLWGRLCAILCTAALFYLGRRLSSVIEPDGGGER

A0A6J1F3C2 uncharacterized protein LOC1114417603.1e-3043.65Show/hide
Query:  MAETSDKIPPPNRRLHFLLRCFGSSPKIRTGKDPATVKPTTGRRNRRILWLRSRFKKSSATVPVDTAVPEITDCCHDEGFSSPKLKKPAPIK-SKAPAVP
        MAE+SDK      RLHFL RCF SSP ++  K      P     NRR   LR RFKKSSATVP+D AVP     CHDE   SP+   P P    K   + 
Subjt:  MAETSDKIPPPNRRLHFLLRCFGSSPKIRTGKDPATVKPTTGRRNRRILWLRSRFKKSSATVPVDTAVPEITDCCHDEGFSSPKLKKPAPIK-SKAPAVP

Query:  AYATESTRPSRLRTKASQTRKNTESTRSDSTAGNLPSATRTASLLHSVSLPARRLNRQKDLKKAVSQIHAGATAPAPKPSTNSPAKFDLSVKTN-PRKKF
            ++ +PS+ R K+  T+ N    +S+ST  N  +  +T+  LHS          +K LKK++S +   A A     +T+ P+       TN P KKF
Subjt:  AYATESTRPSRLRTKASQTRKNTESTRSDSTAGNLPSATRTASLLHSVSLPARRLNRQKDLKKAVSQIHAGATAPAPKPSTNSPAKFDLSVKTN-PRKKF

Query:  DPVIIMSAVAITVLWGRLCAILCTAALFYLGRRLSSVIEPD----GGGERSR
        D VI++ AVAI VLWGRLCAILCTAALFYL R L S  E D    GGG   R
Subjt:  DPVIIMSAVAITVLWGRLCAILCTAALFYLGRRLSSVIEPD----GGGERSR

A0A6J1GBH7 uncharacterized protein LOC1114526504.9e-5254.51Show/hide
Query:  MAETSDKIPPPNRRLHFLLRCFGSSPKIRTGKDPATVKPTTGRRNRRILWLRSRFKKSSATVPVDTAVPEITDCCHDEGFSSPKLKKPAP---IKSKAPA
        MAE S+K+ P  R LHFLLRCFGSSPK++T K+     PTTGRR+ RI   R RFKKSSATVP+D AVPEIT  C D+   SP+ KKP P   IKS+AP 
Subjt:  MAETSDKIPPPNRRLHFLLRCFGSSPKIRTGKDPATVKPTTGRRNRRILWLRSRFKKSSATVPVDTAVPEITDCCHDEGFSSPKLKKPAP---IKSKAPA

Query:  VPAYATESTRPSRLRTKASQTRKNTESTRSDSTAGNLPSATRTASLLHSVSLPARRLNRQKDLKKAVSQIHAGAT---------APAPKPSTNSPAKFDL
        V     E  +P       SQ  K TESTRSD     L  A RTA+LLHS+SLP+RRLNRQKD KK VS + A  T          PA KP  NSPAK   
Subjt:  VPAYATESTRPSRLRTKASQTRKNTESTRSDSTAGNLPSATRTASLLHSVSLPARRLNRQKDLKKAVSQIHAGAT---------APAPKPSTNSPAKFDL

Query:  SVKTNPRKKFDPVIIMSAVAITVLWGRLCAILCTAALFYLGRRLSSVIEPDGGGE
                  D +I++ AVAI VLWG+LCAILCT ALFY  RRL S  E +GGGE
Subjt:  SVKTNPRKKFDPVIIMSAVAITVLWGRLCAILCTAALFYLGRRLSSVIEPDGGGE

A0A6J1IZW6 uncharacterized protein LOC1114814551.0e-2844.13Show/hide
Query:  MAETSDKIPPPNRRLHFLLRCFGSSPKIRTGKDPATVKPTTGRRNRRILWLRSRFKKSSATVPVDTAVPEITDCCHDEGFSSPKLKKPAPIKSKAPAVPA
        MAE+SDK      RLHFL RCF SSP ++  K      P     NRR   LR RFKK SATVP+D AVP     CHDE   SP+   P P    +P    
Subjt:  MAETSDKIPPPNRRLHFLLRCFGSSPKIRTGKDPATVKPTTGRRNRRILWLRSRFKKSSATVPVDTAVPEITDCCHDEGFSSPKLKKPAPIKSKAPAVPA

Query:  YATESTRPSRLRTKASQTRKNTESTRSDSTAGNLPSATRTASLLHSVSLPARRLNRQKDLKKAVSQIHAGATAPAPKPSTNSPAKFDLSVKTN-PRKKFD
           +S   +    K S+TRK +EST+S+ T   LP A +T+  LHS          +K LKK++S  H         P+T+  +       TN P  KFD
Subjt:  YATESTRPSRLRTKASQTRKNTESTRSDSTAGNLPSATRTASLLHSVSLPARRLNRQKDLKKAVSQIHAGATAPAPKPSTNSPAKFDLSVKTN-PRKKFD

Query:  PVIIMSAVAITVLWGRLCAILCTAALFYLGRRLSSVIE----PDGGG
         V ++ AVAI VLWGRLCAILCTAALFYL R L S  E     DGGG
Subjt:  PVIIMSAVAITVLWGRLCAILCTAALFYLGRRLSSVIE----PDGGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAAACTTCTGACAAAATCCCTCCTCCCAATCGCCGACTCCATTTTCTTCTACGTTGCTTCGGATCTTCTCCGAAGATACGAACCGGAAAAGACCCGGCGACCGT
GAAGCCCACCACCGGCCGACGTAACCGCCGGATTCTGTGGCTTAGGTCTCGCTTCAAGAAGTCTTCTGCAACTGTGCCGGTCGACACCGCCGTGCCGGAGATTACTGATT
GCTGCCACGATGAAGGCTTTTCATCGCCGAAATTGAAGAAGCCGGCGCCGATTAAGTCTAAAGCTCCGGCAGTCCCGGCTTACGCTACTGAGTCGACGAGACCGAGTCGT
TTAAGGACCAAGGCGAGTCAAACTCGGAAGAACACCGAGTCAACTCGGTCCGATTCAACGGCGGGAAATCTCCCGTCGGCGACTCGAACCGCCTCGTTGCTCCACTCCGT
CTCTCTCCCTGCCCGGAGATTGAACCGCCAAAAAGATTTGAAAAAAGCAGTCTCTCAGATCCACGCCGGCGCCACCGCGCCGGCACCGAAGCCCTCGACGAATTCGCCGG
CTAAATTCGACCTATCAGTAAAGACAAATCCTCGCAAGAAATTCGATCCGGTGATTATAATGTCCGCCGTGGCGATTACGGTACTGTGGGGGCGACTCTGCGCCATACTG
TGCACGGCGGCGCTGTTCTACCTCGGCCGCCGCTTGAGTTCGGTAATCGAACCGGACGGCGGTGGCGAGAGAAGCCGCGATTTGAAGGCG
mRNA sequenceShow/hide mRNA sequence
ATGGCGGAAACTTCTGACAAAATCCCTCCTCCCAATCGCCGACTCCATTTTCTTCTACGTTGCTTCGGATCTTCTCCGAAGATACGAACCGGAAAAGACCCGGCGACCGT
GAAGCCCACCACCGGCCGACGTAACCGCCGGATTCTGTGGCTTAGGTCTCGCTTCAAGAAGTCTTCTGCAACTGTGCCGGTCGACACCGCCGTGCCGGAGATTACTGATT
GCTGCCACGATGAAGGCTTTTCATCGCCGAAATTGAAGAAGCCGGCGCCGATTAAGTCTAAAGCTCCGGCAGTCCCGGCTTACGCTACTGAGTCGACGAGACCGAGTCGT
TTAAGGACCAAGGCGAGTCAAACTCGGAAGAACACCGAGTCAACTCGGTCCGATTCAACGGCGGGAAATCTCCCGTCGGCGACTCGAACCGCCTCGTTGCTCCACTCCGT
CTCTCTCCCTGCCCGGAGATTGAACCGCCAAAAAGATTTGAAAAAAGCAGTCTCTCAGATCCACGCCGGCGCCACCGCGCCGGCACCGAAGCCCTCGACGAATTCGCCGG
CTAAATTCGACCTATCAGTAAAGACAAATCCTCGCAAGAAATTCGATCCGGTGATTATAATGTCCGCCGTGGCGATTACGGTACTGTGGGGGCGACTCTGCGCCATACTG
TGCACGGCGGCGCTGTTCTACCTCGGCCGCCGCTTGAGTTCGGTAATCGAACCGGACGGCGGTGGCGAGAGAAGCCGCGATTTGAAGGCG
Protein sequenceShow/hide protein sequence
MAETSDKIPPPNRRLHFLLRCFGSSPKIRTGKDPATVKPTTGRRNRRILWLRSRFKKSSATVPVDTAVPEITDCCHDEGFSSPKLKKPAPIKSKAPAVPAYATESTRPSR
LRTKASQTRKNTESTRSDSTAGNLPSATRTASLLHSVSLPARRLNRQKDLKKAVSQIHAGATAPAPKPSTNSPAKFDLSVKTNPRKKFDPVIIMSAVAITVLWGRLCAIL
CTAALFYLGRRLSSVIEPDGGGERSRDLKA