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MS006618 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006618
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionProtein FAR1-RELATED SEQUENCE
Genome locationscaffold482:134546..134863
RNA-Seq ExpressionMS006618
SyntenyMS006618
Gene Ontology termsGO:0110165 - cellular anatomical structure (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EOA25092.1 hypothetical protein CARUB_v10018400mg [Capsella rubella]5.5e-1550Show/hide
Query:  TLYVQPISRIGSK----LTFGKNAQYKVVSFNINHDHDLVRTLMKHILKVNVSIFNAKKALAYDAYGSGISIKATMKLMSREGDDREYLEFFHKNYINYI
        T Y+QPI+R G          KN +YK+VSF +NH+HDLVRT MKH++KVN  I+ ++K  A DA  SGIS  AT+++M RE   RE L F  K+Y N I
Subjt:  TLYVQPISRIGSK----LTFGKNAQYKVVSFNINHDHDLVRTLMKHILKVNVSIFNAKKALAYDAYGSGISIKATMKLMSREGDDREYLEFFHKNYINYI

XP_013694221.1 protein FAR1-RELATED SEQUENCE 5-like [Brassica napus]1.2e-1447.06Show/hide
Query:  YVQPISRIGSKLTFG----KNAQYKVVSFNINHDHDLVRTLMKHILKVNVSIFNAKKALAYDAYGSGISIKATMKLMSREGDDREYLEFFHKNYINYIRK
        Y +PI+R G K         + +YK+VSF +NH+HDLVRT MKH+LK N ++  ++K  A+DA  SGIS KAT+++MS E   RE L F  K+Y NYI +
Subjt:  YVQPISRIGSKLTFG----KNAQYKVVSFNINHDHDLVRTLMKHILKVNVSIFNAKKALAYDAYGSGISIKATMKLMSREGDDREYLEFFHKNYINYIRK

Query:  AK
         +
Subjt:  AK

XP_024163888.1 protein FAR1-RELATED SEQUENCE 5-like [Rosa chinensis]8.5e-1646.79Show/hide
Query:  RRETTLYVQPISRIGSKLTFG----KNAQYKVVSFNINHDHDLVRTLMKHILKVNVSIFNAKKALAYDAYGSGISIKATMKLMSREGDDREYLEFFHKNY
        +RET+ Y  P++R+G K         N ++K+VSF  NH+H+L++T MKH+LK+N S   A+K  A DA  SGIS KAT++LMSRE   RE L F  K+Y
Subjt:  RRETTLYVQPISRIGSKLTFG----KNAQYKVVSFNINHDHDLVRTLMKHILKVNVSIFNAKKALAYDAYGSGISIKATMKLMSREGDDREYLEFFHKNY

Query:  INYIRKAKK
         NYI + ++
Subjt:  INYIRKAKK

XP_024178689.1 protein FAR1-RELATED SEQUENCE 5-like [Rosa chinensis]7.2e-1546.67Show/hide
Query:  TLYVQPISRIGSKLTFG----KNAQYKVVSFNINHDHDLVRTLMKHILKVNVSIFNAKKALAYDAYGSGISIKATMKLMSREGDDREYLEFFHKNYINYI
        T Y  P++R+G K         N + K+VSF  NH+H+L++T MKH+LK+N S   A+K  A DA  SGIS KAT++LMSRE   RE L F  K+Y NYI
Subjt:  TLYVQPISRIGSKLTFG----KNAQYKVVSFNINHDHDLVRTLMKHILKVNVSIFNAKKALAYDAYGSGISIKATMKLMSREGDDREYLEFFHKNYINYI

Query:  RKAKK
         + ++
Subjt:  RKAKK

XP_024196121.1 protein FAR1-RELATED SEQUENCE 5-like [Rosa chinensis]8.5e-1646.79Show/hide
Query:  RRETTLYVQPISRIGSKLTFG----KNAQYKVVSFNINHDHDLVRTLMKHILKVNVSIFNAKKALAYDAYGSGISIKATMKLMSREGDDREYLEFFHKNY
        +RET+ Y  P++R+G K         N ++K+VSF  NH+H+L++T MKH+LK+N S   A+K  A DA  SGIS KAT++LMSRE   RE L F  K+Y
Subjt:  RRETTLYVQPISRIGSKLTFG----KNAQYKVVSFNINHDHDLVRTLMKHILKVNVSIFNAKKALAYDAYGSGISIKATMKLMSREGDDREYLEFFHKNY

Query:  INYIRKAKK
         NYI + ++
Subjt:  INYIRKAKK

TrEMBL top hitse value%identityAlignment
A0A397Y1R8 Protein FAR1-RELATED SEQUENCE1.3e-1450Show/hide
Query:  YVQPISRIGSKLTFG----KNAQYKVVSFNINHDHDLVRTLMKHILKVNVSIFNAKKALAYDAYGSGISIKATMKLMSREGDDREYLEFFHKNYINYI
        Y +PI+R G K         + +Y++VSFN NH+HDLVRT MKH+LK N ++  ++K  A DA  SGIS KAT+++MSRE   RE L F  K+Y NYI
Subjt:  YVQPISRIGSKLTFG----KNAQYKVVSFNINHDHDLVRTLMKHILKVNVSIFNAKKALAYDAYGSGISIKATMKLMSREGDDREYLEFFHKNYINYI

A0A6P5SPE9 Protein FAR1-RELATED SEQUENCE7.7e-1545.87Show/hide
Query:  RRETTLYVQPISRIGSK----LTFGKNAQYKVVSFNINHDHDLVRTLMKHILKVNVSIFNAKKALAYDAYGSGISIKATMKLMSREGDDREYLEFFHKNY
        RRE+  Y  PISR+G +        KN ++K+VSFN +H+HDL++  MKH+L+VN  I  A+KA    A  S   IK T++LMSRE   +E L F  KNY
Subjt:  RRETTLYVQPISRIGSK----LTFGKNAQYKVVSFNINHDHDLVRTLMKHILKVNVSIFNAKKALAYDAYGSGISIKATMKLMSREGDDREYLEFFHKNY

Query:  INYIRKAKK
         NY+R  +K
Subjt:  INYIRKAKK

A0A6P5SRI4 Protein FAR1-RELATED SEQUENCE7.7e-1545.87Show/hide
Query:  RRETTLYVQPISRIGSK----LTFGKNAQYKVVSFNINHDHDLVRTLMKHILKVNVSIFNAKKALAYDAYGSGISIKATMKLMSREGDDREYLEFFHKNY
        RRE+  Y  PISR+G +        KN ++K+VSFN +H+HDL++  MKH+L+VN  I  A+KA    A  S   IK T++LMSRE   +E L F  KNY
Subjt:  RRETTLYVQPISRIGSK----LTFGKNAQYKVVSFNINHDHDLVRTLMKHILKVNVSIFNAKKALAYDAYGSGISIKATMKLMSREGDDREYLEFFHKNY

Query:  INYIRKAKK
         NY+R  +K
Subjt:  INYIRKAKK

R0EZH3 Protein FAR1-RELATED SEQUENCE6.5e-1447.75Show/hide
Query:  RRETTL---YVQPISRIGSK----LTFGKNAQYKVVSFNINHDHDLVRTLMKHILKVNVSIFNAKKALAYDAYGSGISIKATMKLMSREGDDREYLEFFH
        R+E T+   Y QPI+R G          K+ +YK+VSF  NH+HDLVRT MKH+LK N  I  ++K  A DA  SGIS KAT+++MSRE   R  L F  
Subjt:  RRETTL---YVQPISRIGSK----LTFGKNAQYKVVSFNINHDHDLVRTLMKHILKVNVSIFNAKKALAYDAYGSGISIKATMKLMSREGDDREYLEFFH

Query:  KNYINYIRKAK
        K+Y NYI + +
Subjt:  KNYINYIRKAK

R0FR95 Protein FAR1-RELATED SEQUENCE2.7e-1550Show/hide
Query:  TLYVQPISRIGSK----LTFGKNAQYKVVSFNINHDHDLVRTLMKHILKVNVSIFNAKKALAYDAYGSGISIKATMKLMSREGDDREYLEFFHKNYINYI
        T Y+QPI+R G          KN +YK+VSF +NH+HDLVRT MKH++KVN  I+ ++K  A DA  SGIS  AT+++M RE   RE L F  K+Y N I
Subjt:  TLYVQPISRIGSK----LTFGKNAQYKVVSFNINHDHDLVRTLMKHILKVNVSIFNAKKALAYDAYGSGISIKATMKLMSREGDDREYLEFFHKNYINYI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AACCGAAGAGAAACTACTTTGTATGTTCAACCAATTTCTAGGATTGGATCAAAGCTCACATTTGGAAAGAATGCTCAGTACAAAGTTGTGTCTTTTAATATAAATCACGA
TCATGACCTTGTTAGAACGCTAATGAAGCATATTTTAAAAGTCAATGTGAGCATTTTCAATGCTAAAAAAGCTCTAGCTTATGATGCATATGGATCGGGAATTTCAATTA
AAGCAACCATGAAATTGATGAGTAGAGAAGGCGATGACAGAGAATATTTGGAATTCTTCCATAAAAATTATATAAATTATATACGCAAAGCGAAAAAA
mRNA sequenceShow/hide mRNA sequence
AACCGAAGAGAAACTACTTTGTATGTTCAACCAATTTCTAGGATTGGATCAAAGCTCACATTTGGAAAGAATGCTCAGTACAAAGTTGTGTCTTTTAATATAAATCACGA
TCATGACCTTGTTAGAACGCTAATGAAGCATATTTTAAAAGTCAATGTGAGCATTTTCAATGCTAAAAAAGCTCTAGCTTATGATGCATATGGATCGGGAATTTCAATTA
AAGCAACCATGAAATTGATGAGTAGAGAAGGCGATGACAGAGAATATTTGGAATTCTTCCATAAAAATTATATAAATTATATACGCAAAGCGAAAAAA
Protein sequenceShow/hide protein sequence
NRRETTLYVQPISRIGSKLTFGKNAQYKVVSFNINHDHDLVRTLMKHILKVNVSIFNAKKALAYDAYGSGISIKATMKLMSREGDDREYLEFFHKNYINYIRKAKK