CuGenDBv2

Gene ID	MS006626
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	zf-RVT domain-containing protein
Genome location	scaffold482:269970..270368
RNA-Seq Expression	MS006626
Synteny	MS006626
Gene Ontology terms	GO:0005488 - binding (molecular function) GO:0016641 - oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor (molecular function)
InterPro domains	IPR026960 - Reverse transcriptase zinc-binding domain

Homology

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GenBank top hits

e value

%identity

Alignment

CAN70431.1 hypothetical protein VITISV_030910 [Vitis vinifera]

4.6e-19

35.38

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Query:  KTIWRDKYPEKVNFFFLWVLSHHAINTNDKLRRRLPYMAILPLWCSICQSSSESQQHLFVSCNFALAFWNFLLNTFGWSTALPNDPPTLIEFTLSGRPFK
        K +W  K P KV     W+++H  +NTNDKL+ R PY A+ P WC +C+++ ES  HLF+ C   +  WN L    G     P     ++     G    
Subjt:  KTIWRDKYPEKVNFFFLWVLSHHAINTNDKLRRRLPYMAILPLWCSICQSSSESQQHLFVSCNFALAFWNFLLNTFGWSTALPNDPPTLIEFTLSGRPFK

Query:  KQKKQLWLTFIRAFLWIIWGERNQRTFNSK
         + K LW       +WI+W ERN+R F  K
Subjt:  KQKKQLWLTFIRAFLWIIWGERNQRTFNSK

RVW15110.1 Copia protein [Vitis vinifera]

4.6e-19

35.38

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Query:  KTIWRDKYPEKVNFFFLWVLSHHAINTNDKLRRRLPYMAILPLWCSICQSSSESQQHLFVSCNFALAFWNFLLNTFGWSTALPNDPPTLIEFTLSGRPFK
        K +W  K P KV     W+++H  +NTNDKL+ R PY A+ P WC +C+ + ES  HLF+ C   +  W+ L N  G +   P     ++  T  G    
Subjt:  KTIWRDKYPEKVNFFFLWVLSHHAINTNDKLRRRLPYMAILPLWCSICQSSSESQQHLFVSCNFALAFWNFLLNTFGWSTALPNDPPTLIEFTLSGRPFK

Query:  KQKKQLWLTFIRAFLWIIWGERNQRTFNSK
         + K LW       +W++W ERN R F  K
Subjt:  KQKKQLWLTFIRAFLWIIWGERNQRTFNSK

RVW56231.1 putative ribonuclease H protein [Vitis vinifera]

4.6e-19

35.38

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Query:  KTIWRDKYPEKVNFFFLWVLSHHAINTNDKLRRRLPYMAILPLWCSICQSSSESQQHLFVSCNFALAFWNFLLNTFGWSTALPNDPPTLIEFTLSGRPFK
        K +W  K P KV     W+++H  +NTNDKL+ R PY A+ P WC +C+++ ES  HLF+ C   +  WN L    G     P     ++     G    
Subjt:  KTIWRDKYPEKVNFFFLWVLSHHAINTNDKLRRRLPYMAILPLWCSICQSSSESQQHLFVSCNFALAFWNFLLNTFGWSTALPNDPPTLIEFTLSGRPFK

Query:  KQKKQLWLTFIRAFLWIIWGERNQRTFNSK
         + K LW       +WI+W ERN+R F  K
Subjt:  KQKKQLWLTFIRAFLWIIWGERNQRTFNSK

RVW72814.1 hypothetical protein CK203_049218 [Vitis vinifera]

4.6e-19

35.38

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Query:  KTIWRDKYPEKVNFFFLWVLSHHAINTNDKLRRRLPYMAILPLWCSICQSSSESQQHLFVSCNFALAFWNFLLNTFGWSTALPNDPPTLIEFTLSGRPFK
        K +W  K P KV     W+++H  +NTNDKL+ R PY A+ P WC +C+ + ES  HLF+ C   +  W+ L N  G S   P     ++  +  G    
Subjt:  KTIWRDKYPEKVNFFFLWVLSHHAINTNDKLRRRLPYMAILPLWCSICQSSSESQQHLFVSCNFALAFWNFLLNTFGWSTALPNDPPTLIEFTLSGRPFK

Query:  KQKKQLWLTFIRAFLWIIWGERNQRTFNSK
         + K LW       +W++W ERN R F  K
Subjt:  KQKKQLWLTFIRAFLWIIWGERNQRTFNSK

RVW96953.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

4.6e-19

35.38

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Query:  KTIWRDKYPEKVNFFFLWVLSHHAINTNDKLRRRLPYMAILPLWCSICQSSSESQQHLFVSCNFALAFWNFLLNTFGWSTALPNDPPTLIEFTLSGRPFK
        K +W  K P KV     W+++H  +NTNDKL+ R PY A+ P WC +C+ + ES  HLF+ C   +  W+ L N  G +   P     ++  T  G    
Subjt:  KTIWRDKYPEKVNFFFLWVLSHHAINTNDKLRRRLPYMAILPLWCSICQSSSESQQHLFVSCNFALAFWNFLLNTFGWSTALPNDPPTLIEFTLSGRPFK

Query:  KQKKQLWLTFIRAFLWIIWGERNQRTFNSK
         + K LW       +W++W ERN R F  K
Subjt:  KQKKQLWLTFIRAFLWIIWGERNQRTFNSK

TrEMBL top hits

e value

%identity

Alignment

A0A438BW88 Copia protein

2.2e-19

35.38

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Query:  KTIWRDKYPEKVNFFFLWVLSHHAINTNDKLRRRLPYMAILPLWCSICQSSSESQQHLFVSCNFALAFWNFLLNTFGWSTALPNDPPTLIEFTLSGRPFK
        K +W  K P KV     W+++H  +NTNDKL+ R PY A+ P WC +C+ + ES  HLF+ C   +  W+ L N  G +   P     ++  T  G    
Subjt:  KTIWRDKYPEKVNFFFLWVLSHHAINTNDKLRRRLPYMAILPLWCSICQSSSESQQHLFVSCNFALAFWNFLLNTFGWSTALPNDPPTLIEFTLSGRPFK

Query:  KQKKQLWLTFIRAFLWIIWGERNQRTFNSK
         + K LW       +W++W ERN R F  K
Subjt:  KQKKQLWLTFIRAFLWIIWGERNQRTFNSK

A0A438F8D1 Putative ribonuclease H protein

2.2e-19

35.38

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Query:  KTIWRDKYPEKVNFFFLWVLSHHAINTNDKLRRRLPYMAILPLWCSICQSSSESQQHLFVSCNFALAFWNFLLNTFGWSTALPNDPPTLIEFTLSGRPFK
        K +W  K P KV     W+++H  +NTNDKL+ R PY A+ P WC +C+++ ES  HLF+ C   +  WN L    G     P     ++     G    
Subjt:  KTIWRDKYPEKVNFFFLWVLSHHAINTNDKLRRRLPYMAILPLWCSICQSSSESQQHLFVSCNFALAFWNFLLNTFGWSTALPNDPPTLIEFTLSGRPFK

Query:  KQKKQLWLTFIRAFLWIIWGERNQRTFNSK
         + K LW       +WI+W ERN+R F  K
Subjt:  KQKKQLWLTFIRAFLWIIWGERNQRTFNSK

A0A438GKW8 zf-RVT domain-containing protein

2.2e-19

35.38

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Query:  KTIWRDKYPEKVNFFFLWVLSHHAINTNDKLRRRLPYMAILPLWCSICQSSSESQQHLFVSCNFALAFWNFLLNTFGWSTALPNDPPTLIEFTLSGRPFK
        K +W  K P KV     W+++H  +NTNDKL+ R PY A+ P WC +C+ + ES  HLF+ C   +  W+ L N  G S   P     ++  +  G    
Subjt:  KTIWRDKYPEKVNFFFLWVLSHHAINTNDKLRRRLPYMAILPLWCSICQSSSESQQHLFVSCNFALAFWNFLLNTFGWSTALPNDPPTLIEFTLSGRPFK

Query:  KQKKQLWLTFIRAFLWIIWGERNQRTFNSK
         + K LW       +W++W ERN R F  K
Subjt:  KQKKQLWLTFIRAFLWIIWGERNQRTFNSK

A0A438IJT2 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.2e-19

35.38

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Query:  KTIWRDKYPEKVNFFFLWVLSHHAINTNDKLRRRLPYMAILPLWCSICQSSSESQQHLFVSCNFALAFWNFLLNTFGWSTALPNDPPTLIEFTLSGRPFK
        K +W  K P KV     W+++H  +NTNDKL+ R PY A+ P WC +C+ + ES  HLF+ C   +  W+ L N  G +   P     ++  T  G    
Subjt:  KTIWRDKYPEKVNFFFLWVLSHHAINTNDKLRRRLPYMAILPLWCSICQSSSESQQHLFVSCNFALAFWNFLLNTFGWSTALPNDPPTLIEFTLSGRPFK

Query:  KQKKQLWLTFIRAFLWIIWGERNQRTFNSK
         + K LW       +W++W ERN R F  K
Subjt:  KQKKQLWLTFIRAFLWIIWGERNQRTFNSK

A5BQI4 Reverse transcriptase domain-containing protein

2.2e-19

35.38

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Query:  KTIWRDKYPEKVNFFFLWVLSHHAINTNDKLRRRLPYMAILPLWCSICQSSSESQQHLFVSCNFALAFWNFLLNTFGWSTALPNDPPTLIEFTLSGRPFK
        K +W  K P KV     W+++H  +NTNDKL+ R PY A+ P WC +C+++ ES  HLF+ C   +  WN L    G     P     ++     G    
Subjt:  KTIWRDKYPEKVNFFFLWVLSHHAINTNDKLRRRLPYMAILPLWCSICQSSSESQQHLFVSCNFALAFWNFLLNTFGWSTALPNDPPTLIEFTLSGRPFK

Query:  KQKKQLWLTFIRAFLWIIWGERNQRTFNSK
         + K LW       +WI+W ERN+R F  K
Subjt:  KQKKQLWLTFIRAFLWIIWGERNQRTFNSK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G33710.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

1.8e-05

25.95

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Query:  KTIWRDKYPEKVNFFFLWVLSHHAINTNDKLRRRLPYMAILPLWCSICQSSSESQQHLFVSCNFALAFWNFL---LNTFGWSTALPNDPPTLIEFTLSGR
        KT+W      K + F +WV +   + T  +L     +   L   C +C    E + HLF++C FA   W+ +   L    +S  + ND   L+++TL   
Subjt:  KTIWRDKYPEKVNFFFLWVLSHHAINTNDKLRRRLPYMAILPLWCSICQSSSESQQHLFVSCNFALAFWNFL---LNTFGWSTALPNDPPTLIEFTLSGR

Query:  PFKKQKKQLWLTFIRAFLWIIWGERNQRTFN
          ++    L    +++ L+ IW +RN    N
Subjt:  PFKKQKKQLWLTFIRAFLWIIWGERNQRTFN

AT2G02520.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

1.2e-09

30.43

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Query:  KTIW-RDKYPEKVNFFFLWVLSHHAINTNDKLRRRLPYMAILPLWCSICQSSSESQQHLFVSCNFALAFWNFLLNTFGWSTALPNDPPTLIEFTLSGRPF
        K IW + K P+  + F  WV   H ++T D   R + +  I P  C  C +  E++QHLF  C FA   W +      +++ +   PP L E  +     
Subjt:  KTIW-RDKYPEKVNFFFLWVLSHHAINTNDKLRRRLPYMAILPLWCSICQSSSESQQHLFVSCNFALAFWNFLLNTFGWSTALPNDPPTLIEFTLSGRPF

Query:  KKQKKQLWLTFIR----AFLWIIWGERNQRTFNSKCQP
          Q K +  T +R    A ++ IW ERN R  +S  +P
Subjt:  KKQKKQLWLTFIR----AFLWIIWGERNQRTFNSKCQP

Sequences

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CDS sequence

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AAAACAATCTGGCGGGACAAATACCCAGAAAAAGTGAATTTTTTTTTCCTTTGGGTGCTTAGTCACCATGCTATTAACACCAACGATAAGCTTCGACGCCGGTTGCCATA
TATGGCTATTTTACCACTGTGGTGCTCTATTTGTCAATCCAGTTCAGAATCACAACAACACCTTTTTGTCTCTTGCAACTTTGCTTTAGCATTTTGGAATTTCCTACTAA
ACACTTTTGGATGGTCCACGGCCTTACCAAATGATCCTCCCACCCTCATAGAGTTCACCTTATCTGGACGTCCTTTCAAAAAACAAAAGAAACAGCTATGGTTGACCTTT
ATTCGAGCTTTTCTCTGGATCATATGGGGCGAACGAAACCAAAGAACTTTCAACAGCAAATGCCAACCT

mRNA sequence

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Protein sequence

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KTIWRDKYPEKVNFFFLWVLSHHAINTNDKLRRRLPYMAILPLWCSICQSSSESQQHLFVSCNFALAFWNFLLNTFGWSTALPNDPPTLIEFTLSGRPFKKQKKQLWLTF
IRAFLWIIWGERNQRTFNSKCQP

MS006626 (gene) of Bitter gourd (TR) v1 genome