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MS006634 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006634
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationscaffold191:131388..131830
RNA-Seq ExpressionMS006634
SyntenyMS006634
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053143.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]1.7e-2140.54Show/hide
Query:  NQNSLLVNPGNKISIVNLNDENFLLWRLQVLTALQGHGLEKFIDPEAIIPPEFVESEDEFASIPTR--NPEFLNWNRP-----------------GQMLE
        N    +   GNKIS+V L+D+NFLLW+ Q+LTAL+ + LE F + E   P +++ S    ++  TR  NPE+  W R                   QM+ 
Subjt:  NQNSLLVNPGNKISIVNLNDENFLLWRLQVLTALQGHGLEKFIDPEAIIPPEFVESEDEFASIPTR--NPEFLNWNRP-----------------GQMLE

Query:  CNKATEVWTILNSLFSSRNLARVMELKSKLENLKKGNLSLKDYFLKVK
        C  A E+W  L  +FSSR LA+ M+ K+KL N+KKG++SLK+YFLK++
Subjt:  CNKATEVWTILNSLFSSRNLARVMELKSKLENLKKGNLSLKDYFLKVK

KZV26211.1 hypothetical protein F511_28557 [Dorcoceras hygrometricum]9.8e-2243.15Show/hide
Query:  NQNSLLVNPGNKISIVNLNDENFLLWRLQVLTALQGHGLEKFIDPEAIIPPEFVESEDEFASIPTRNPEFLNWNR-----------------PGQMLECN
        N   LLVNP N+I+ V L+DENFLLWRLQVL  ++G GLE FI    ++P + V+SE+  A   T NP F+ WNR                   QM+ C+
Subjt:  NQNSLLVNPGNKISIVNLNDENFLLWRLQVLTALQGHGLEKFIDPEAIIPPEFVESEDEFASIPTRNPEFLNWNR-----------------PGQMLECN

Query:  KATEVWTILNSLFSSRNLARVMELKSKLENLKKGNLSLKDYFLKVK
         ++++WT +  LF++R+ AR M+ K +L+ LKKG L +KDY  K+K
Subjt:  KATEVWTILNSLFSSRNLARVMELKSKLENLKKGNLSLKDYFLKVK

XP_022154487.1 uncharacterized protein LOC111021757 [Momordica charantia]5.7e-3050.68Show/hide
Query:  QNSLLVNPGNKISIVNLNDENFLLWRLQVLTALQGHGLEKFIDPEAIIPPEFVE-SEDEFASIP-TRNPEFLNWNRP-----------------GQMLEC
        Q S  +NPG+K+SIV LND+N LLW+ Q+ TALQG+GLE +ID     P +FV+ +EDE +S    +NP +  W +                   QML+C
Subjt:  QNSLLVNPGNKISIVNLNDENFLLWRLQVLTALQGHGLEKFIDPEAIIPPEFVE-SEDEFASIP-TRNPEFLNWNRP-----------------GQMLEC

Query:  NKATEVWTILNSLFSSRNLARVMELKSKLENLKKGNLSLKDYFLKVKN
          A E+WT+L  +F+SR LARVM+LK KLEN KKGNLSLKDYFLK+KN
Subjt:  NKATEVWTILNSLFSSRNLARVMELKSKLENLKKGNLSLKDYFLKVKN

XP_022156747.1 uncharacterized protein LOC111023586 [Momordica charantia]4.9e-2146.34Show/hide
Query:  RLQVLTALQGHGLEKFIDPEAIIPPEFVESEDEFASIPTR--NPEFLNWNRP-----------------GQMLECNKATEVWTILNSLFSSRNLARVMEL
        + QVLTA+QGHGLE++ID +   P  F+++ D   S  T+  NPE+ +W +                   QML+C    E+WT+L   F+SRNLARVM+L
Subjt:  RLQVLTALQGHGLEKFIDPEAIIPPEFVESEDEFASIPTR--NPEFLNWNRP-----------------GQMLECNKATEVWTILNSLFSSRNLARVMEL

Query:  KSKLENLKKGNLSLKDYFLKVKN
        KSKLEN+KKG+++LK+YFLK+KN
Subjt:  KSKLENLKKGNLSLKDYFLKVKN

XP_022159146.1 uncharacterized protein LOC111025572 [Momordica charantia]4.5e-2761.32Show/hide
Query:  NQNSLLVNPGNKISIVNLNDENFLLWRLQVLTALQGHGLEKFIDPEAIIPPEFVESEDEFASIPTRNPEFLNWNRP-----------------GQMLECN
        NQNS +VNPGNKIS + LNDENFLLWRLQ+ TALQGHGL KFIDPEA IP EFV+S DE +S+P+ NPEF+NW R                   QMLEC 
Subjt:  NQNSLLVNPGNKISIVNLNDENFLLWRLQVLTALQGHGLEKFIDPEAIIPPEFVESEDEFASIPTRNPEFLNWNRP-----------------GQMLECN

Query:  KATEVW
         A EVW
Subjt:  KATEVW

TrEMBL top hitse value%identityAlignment
A0A2Z7AWD6 Uncharacterized protein4.7e-2243.15Show/hide
Query:  NQNSLLVNPGNKISIVNLNDENFLLWRLQVLTALQGHGLEKFIDPEAIIPPEFVESEDEFASIPTRNPEFLNWNR-----------------PGQMLECN
        N   LLVNP N+I+ V L+DENFLLWRLQVL  ++G GLE FI    ++P + V+SE+  A   T NP F+ WNR                   QM+ C+
Subjt:  NQNSLLVNPGNKISIVNLNDENFLLWRLQVLTALQGHGLEKFIDPEAIIPPEFVESEDEFASIPTRNPEFLNWNR-----------------PGQMLECN

Query:  KATEVWTILNSLFSSRNLARVMELKSKLENLKKGNLSLKDYFLKVK
         ++++WT +  LF++R+ AR M+ K +L+ LKKG L +KDY  K+K
Subjt:  KATEVWTILNSLFSSRNLARVMELKSKLENLKKGNLSLKDYFLKVK

A0A5A7UB21 Keratin, type II cytoskeletal 1-like8.1e-2240.54Show/hide
Query:  NQNSLLVNPGNKISIVNLNDENFLLWRLQVLTALQGHGLEKFIDPEAIIPPEFVESEDEFASIPTR--NPEFLNWNRP-----------------GQMLE
        N    +   GNKIS+V L+D+NFLLW+ Q+LTAL+ + LE F + E   P +++ S    ++  TR  NPE+  W R                   QM+ 
Subjt:  NQNSLLVNPGNKISIVNLNDENFLLWRLQVLTALQGHGLEKFIDPEAIIPPEFVESEDEFASIPTR--NPEFLNWNRP-----------------GQMLE

Query:  CNKATEVWTILNSLFSSRNLARVMELKSKLENLKKGNLSLKDYFLKVK
        C  A E+W  L  +FSSR LA+ M+ K+KL N+KKG++SLK+YFLK++
Subjt:  CNKATEVWTILNSLFSSRNLARVMELKSKLENLKKGNLSLKDYFLKVK

A0A6J1DLT9 uncharacterized protein LOC1110217572.8e-3050.68Show/hide
Query:  QNSLLVNPGNKISIVNLNDENFLLWRLQVLTALQGHGLEKFIDPEAIIPPEFVE-SEDEFASIP-TRNPEFLNWNRP-----------------GQMLEC
        Q S  +NPG+K+SIV LND+N LLW+ Q+ TALQG+GLE +ID     P +FV+ +EDE +S    +NP +  W +                   QML+C
Subjt:  QNSLLVNPGNKISIVNLNDENFLLWRLQVLTALQGHGLEKFIDPEAIIPPEFVE-SEDEFASIP-TRNPEFLNWNRP-----------------GQMLEC

Query:  NKATEVWTILNSLFSSRNLARVMELKSKLENLKKGNLSLKDYFLKVKN
          A E+WT+L  +F+SR LARVM+LK KLEN KKGNLSLKDYFLK+KN
Subjt:  NKATEVWTILNSLFSSRNLARVMELKSKLENLKKGNLSLKDYFLKVKN

A0A6J1DSS1 uncharacterized protein LOC1110235862.3e-2146.34Show/hide
Query:  RLQVLTALQGHGLEKFIDPEAIIPPEFVESEDEFASIPTR--NPEFLNWNRP-----------------GQMLECNKATEVWTILNSLFSSRNLARVMEL
        + QVLTA+QGHGLE++ID +   P  F+++ D   S  T+  NPE+ +W +                   QML+C    E+WT+L   F+SRNLARVM+L
Subjt:  RLQVLTALQGHGLEKFIDPEAIIPPEFVESEDEFASIPTR--NPEFLNWNRP-----------------GQMLECNKATEVWTILNSLFSSRNLARVMEL

Query:  KSKLENLKKGNLSLKDYFLKVKN
        KSKLEN+KKG+++LK+YFLK+KN
Subjt:  KSKLENLKKGNLSLKDYFLKVKN

A0A6J1E314 uncharacterized protein LOC1110255722.2e-2761.32Show/hide
Query:  NQNSLLVNPGNKISIVNLNDENFLLWRLQVLTALQGHGLEKFIDPEAIIPPEFVESEDEFASIPTRNPEFLNWNRP-----------------GQMLECN
        NQNS +VNPGNKIS + LNDENFLLWRLQ+ TALQGHGL KFIDPEA IP EFV+S DE +S+P+ NPEF+NW R                   QMLEC 
Subjt:  NQNSLLVNPGNKISIVNLNDENFLLWRLQVLTALQGHGLEKFIDPEAIIPPEFVESEDEFASIPTRNPEFLNWNRP-----------------GQMLECN

Query:  KATEVW
         A EVW
Subjt:  KATEVW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCTAATCAGAATAGTTTGCTTGTGAATCCTGGAAATAAAATTTCCATAGTAAATTTAAACGACGAAAATTTTCTGCTATGGAGGTTACAAGTACTTACAGCACTGCAAGG
CCACGGGTTGGAGAAATTCATCGATCCAGAGGCTATAATTCCACCTGAATTTGTTGAATCTGAAGATGAATTTGCTTCTATTCCAACTCGGAATCCTGAATTTCTCAATT
GGAACAGACCAGGACAAATGCTTGAATGCAATAAAGCCACAGAAGTTTGGACAATTTTGAATAGCTTGTTCTCATCAAGAAATCTAGCAAGAGTTATGGAATTGAAGTCG
AAACTTGAAAATCTGAAGAAGGGCAACCTCAGTCTCAAAGATTATTTCCTTAAAGTCAAGAAT
mRNA sequenceShow/hide mRNA sequence
CCTAATCAGAATAGTTTGCTTGTGAATCCTGGAAATAAAATTTCCATAGTAAATTTAAACGACGAAAATTTTCTGCTATGGAGGTTACAAGTACTTACAGCACTGCAAGG
CCACGGGTTGGAGAAATTCATCGATCCAGAGGCTATAATTCCACCTGAATTTGTTGAATCTGAAGATGAATTTGCTTCTATTCCAACTCGGAATCCTGAATTTCTCAATT
GGAACAGACCAGGACAAATGCTTGAATGCAATAAAGCCACAGAAGTTTGGACAATTTTGAATAGCTTGTTCTCATCAAGAAATCTAGCAAGAGTTATGGAATTGAAGTCG
AAACTTGAAAATCTGAAGAAGGGCAACCTCAGTCTCAAAGATTATTTCCTTAAAGTCAAGAAT
Protein sequenceShow/hide protein sequence
PNQNSLLVNPGNKISIVNLNDENFLLWRLQVLTALQGHGLEKFIDPEAIIPPEFVESEDEFASIPTRNPEFLNWNRPGQMLECNKATEVWTILNSLFSSRNLARVMELKS
KLENLKKGNLSLKDYFLKVKN