CuGenDBv2

Gene ID	MS006636
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Reverse transcriptase
Genome location	scaffold191:136575..136841
RNA-Seq Expression	MS006636
Synteny	MS006636
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7532416.1 Endonuclease/exonuclease/phosphatase superfamily [Arabidopsis thaliana x Arabidopsis arenosa]

4.8e-17

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Query:  RAIPTSAMSCFWLPRTFYLETYGDMARFWWGTSETTERIHWD-----CVDLKSGGLNFRDLEVFNQALLAKQFWRLIRHPTLLVSRVVKGTY
        +A+PT  MSCF LP+    +    +A FWW T+E +  IHW      C+    GGL FR LE FN ALLAKQ WRL+RHP  L+SRV++G Y
Subjt:  RAIPTSAMSCFWLPRTFYLETYGDMARFWWGTSETTERIHWD-----CVDLKSGGLNFRDLEVFNQALLAKQFWRLIRHPTLLVSRVVKGTY

XP_022131662.1 uncharacterized protein LOC111004787 [Momordica charantia]

3.3e-18

53.26

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Query:  RAIPTSAMSCFWLPRTFYLETYGDMARFWWGTSETTERIHW-----DCVDLKSGGLNFRDLEVFNQALLAKQFWRLIRHPTLLVSRVVKGTY
        +AIP  AMS F LP+ F  E     ARFWWG+S  T+++HW      C+  + GGLNFRDLE FNQAL+AKQ WR++++P +LVSRV+K  Y
Subjt:  RAIPTSAMSCFWLPRTFYLETYGDMARFWWGTSETTERIHW-----DCVDLKSGGLNFRDLEVFNQALLAKQFWRLIRHPTLLVSRVVKGTY

XP_024156142.1 uncharacterized protein LOC112164137 [Rosa chinensis]

4.8e-17

48.91

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Query:  RAIPTSAMSCFWLPRTFYLETYGDMARFWWGTSETTERIHW-----DCVDLKSGGLNFRDLEVFNQALLAKQFWRLIRHPTLLVSRVVKGTY
        +++PT  MSCF LP+    E +  MA FWWG SE   +IHW      CV  + GGL FR++E FNQALLAKQ WR++RHP  L+ + +K  Y
Subjt:  RAIPTSAMSCFWLPRTFYLETYGDMARFWWGTSETTERIHW-----DCVDLKSGGLNFRDLEVFNQALLAKQFWRLIRHPTLLVSRVVKGTY

XP_024172304.2 uncharacterized protein LOC112178381 [Rosa chinensis]

4.8e-17

48.91

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Query:  RAIPTSAMSCFWLPRTFYLETYGDMARFWWGTSETTERIHW-----DCVDLKSGGLNFRDLEVFNQALLAKQFWRLIRHPTLLVSRVVKGTY
        +++PT  MSCF LP+    E +  MA FWWG SE   +IHW      CV  + GGL FR++E FNQALLAKQ WR++RHP  L+ + +K  Y
Subjt:  RAIPTSAMSCFWLPRTFYLETYGDMARFWWGTSETTERIHW-----DCVDLKSGGLNFRDLEVFNQALLAKQFWRLIRHPTLLVSRVVKGTY

XP_030495126.1 uncharacterized protein LOC115710915 [Cannabis sativa]

3.7e-17

46.74

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Query:  RAIPTSAMSCFWLPRTFYLETYGDMARFWWGTSETTERIHWD-----CVDLKSGGLNFRDLEVFNQALLAKQFWRLIRHPTLLVSRVVKGTY
        +AIPT  MSCF LP+    + +  MARFWWG+S+T ++IHW      C   + GG+ F++LE+FNQ+LLAKQ W++I +P  +++RV+K  Y
Subjt:  RAIPTSAMSCFWLPRTFYLETYGDMARFWWGTSETTERIHWD-----CVDLKSGGLNFRDLEVFNQALLAKQFWRLIRHPTLLVSRVVKGTY

TrEMBL top hits

e value

%identity

Alignment

A0A6J1BRN0 uncharacterized protein LOC111004787

1.6e-18

53.26

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Query:  RAIPTSAMSCFWLPRTFYLETYGDMARFWWGTSETTERIHW-----DCVDLKSGGLNFRDLEVFNQALLAKQFWRLIRHPTLLVSRVVKGTY
        +AIP  AMS F LP+ F  E     ARFWWG+S  T+++HW      C+  + GGLNFRDLE FNQAL+AKQ WR++++P +LVSRV+K  Y
Subjt:  RAIPTSAMSCFWLPRTFYLETYGDMARFWWGTSETTERIHW-----DCVDLKSGGLNFRDLEVFNQALLAKQFWRLIRHPTLLVSRVVKGTY

A0A803PM68 Uncharacterized protein

1.4e-17

52.17

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Query:  RAIPTSAMSCFWLPRTFYLETYGDMARFWWGTSETTERIHWD-----CVDLKSGGLNFRDLEVFNQALLAKQFWRLIRHPTLLVSRVVKGTY
        +AIPT  MSCF LP+      +   ARFWWG+SE   +IHW      C   + GGL FRDL +FNQALLAKQ WR IR+P  L S+V+K +Y
Subjt:  RAIPTSAMSCFWLPRTFYLETYGDMARFWWGTSETTERIHWD-----CVDLKSGGLNFRDLEVFNQALLAKQFWRLIRHPTLLVSRVVKGTY

A0A803PWX1 Uncharacterized protein

1.4e-17

53.26

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Query:  RAIPTSAMSCFWLPRTFYLETYGDMARFWWGTSETTERIHWD-----CVDLKSGGLNFRDLEVFNQALLAKQFWRLIRHPTLLVSRVVKGTY
        +AIPT  MSCF LP+      +   ARFWWG+SE   +IHW      C   + GGL FRDL +FNQALLAKQ WR IR P  L SRV+K +Y
Subjt:  RAIPTSAMSCFWLPRTFYLETYGDMARFWWGTSETTERIHWD-----CVDLKSGGLNFRDLEVFNQALLAKQFWRLIRHPTLLVSRVVKGTY

A0A803Q1K6 Uncharacterized protein

4.7e-18

52.17

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Query:  RAIPTSAMSCFWLPRTFYLETYGDMARFWWGTSETTERIHWD-----CVDLKSGGLNFRDLEVFNQALLAKQFWRLIRHPTLLVSRVVKGTY
        +AIPT  MSCF LP+      +   +RFWWG+S+  ++IHW      C     GGL FRDL +FNQALLAKQ WR +RHP LL SRV+K +Y
Subjt:  RAIPTSAMSCFWLPRTFYLETYGDMARFWWGTSETTERIHWD-----CVDLKSGGLNFRDLEVFNQALLAKQFWRLIRHPTLLVSRVVKGTY

A0A803QSN3 Uncharacterized protein

8.0e-18

48.91

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Query:  RAIPTSAMSCFWLPRTFYLETYGDMARFWWGTSETTERIHWD-----CVDLKSGGLNFRDLEVFNQALLAKQFWRLIRHPTLLVSRVVKGTY
        +AIPT  MSCF LP+    + +  MARFWWG+SE+  +IHW      C     GG+ F+DLE FNQ+LLAKQ W++I +P+ L++RV+K  Y
Subjt:  RAIPTSAMSCFWLPRTFYLETYGDMARFWWGTSETTERIHWD-----CVDLKSGGLNFRDLEVFNQALLAKQFWRLIRHPTLLVSRVVKGTY

SwissProt top hits

e value

%identity

Alignment

P93295 Uncharacterized mitochondrial protein AtMg00310

2.8e-12

42.39

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Query:  AIPTSAMSCFWLPRTFYLETYGDMARFWWGTSETTERIHWD-----CVDLK-SGGLNFRDLEVFNQALLAKQFWRLIRHPTLLVSRVVKGTY
        A+P  AMSCF L +    +    M  FWW + E   +I W      C   +  GGL FRDL  FNQALLAKQ +R+I  P  L+SR+++  Y
Subjt:  AIPTSAMSCFWLPRTFYLETYGDMARFWWGTSETTERIHWD-----CVDLK-SGGLNFRDLEVFNQALLAKQFWRLIRHPTLLVSRVVKGTY

Arabidopsis top hits

e value

%identity

Alignment

AT4G29090.1 Ribonuclease H-like superfamily protein

1.3e-15

39.56

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Query:  AIPTSAMSCFWLPRTFYLETYGDMARFWWGTSETTERIHWDCVDLKS-----GGLNFRDLEVFNQALLAKQFWRLIRHPTLLVSRVVKGTY
        A+PT  M+CF LP+T   +    +A FWW   +  + +HW   D  S     GG+ F+D+E FN ALL KQ WR++  P  L+++V K  Y
Subjt:  AIPTSAMSCFWLPRTFYLETYGDMARFWWGTSETTERIHWDCVDLKS-----GGLNFRDLEVFNQALLAKQFWRLIRHPTLLVSRVVKGTY

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

2.0e-13

42.39

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Query:  AIPTSAMSCFWLPRTFYLETYGDMARFWWGTSETTERIHWD-----CVDLK-SGGLNFRDLEVFNQALLAKQFWRLIRHPTLLVSRVVKGTY
        A+P  AMSCF L +    +    M  FWW + E   +I W      C   +  GGL FRDL  FNQALLAKQ +R+I  P  L+SR+++  Y
Subjt:  AIPTSAMSCFWLPRTFYLETYGDMARFWWGTSETTERIHWD-----CVDLK-SGGLNFRDLEVFNQALLAKQFWRLIRHPTLLVSRVVKGTY

Sequences

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CDS sequence

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CGAGCAATTCCCACTTCTGCTATGAGTTGCTTTTGGCTTCCTAGAACTTTCTATTTGGAAACGTATGGGGATATGGCTCGCTTTTGGTGGGGAACGTCTGAAACAACGGA
GAGGATACATTGGGATTGTGTTGACCTAAAGAGTGGAGGTCTAAATTTTCGAGATTTAGAGGTGTTCAATCAAGCATTACTAGCAAAACAATTTTGGCGGCTAATCCGAC
ACCCAACATTGCTTGTGTCCAGAGTTGTAAAGGGTACTTAT

mRNA sequence

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Protein sequence

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RAIPTSAMSCFWLPRTFYLETYGDMARFWWGTSETTERIHWDCVDLKSGGLNFRDLEVFNQALLAKQFWRLIRHPTLLVSRVVKGTY

MS006636 (gene) of Bitter gourd (TR) v1 genome