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MS006640 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006640
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Genome locationscaffold191:261318..261632
RNA-Seq ExpressionMS006640
SyntenyMS006640
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_006471930.1 uncharacterized protein LOC102617744 [Citrus sinensis]6.0e-0635.24Show/hide
Query:  WVTPPTHAWTLNTYTSQSESHQQGGLGWVLRNWKSEVVAAGSKMVESCHGVKRMEAEAVLKGLRHMLSRAPSLPIRVETDSEELGKVLHDEDEDLTEIWW
        W  PPT+   LN   + +   Q+ GLG VLR+    VVAAG K       V   EAEA+  GL+ +  +A +  + VETD +++ +++++     +EI+W
Subjt:  WVTPPTHAWTLNTYTSQSESHQQGGLGWVLRNWKSEVVAAGSKMVESCHGVKRMEAEAVLKGLRHMLSRAPSLPIRVETDSEELGKVLHDEDEDLTEIWW

Query:  IMEEI
        I+ EI
Subjt:  IMEEI

XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]4.5e-0936.46Show/hide
Query:  WVTPPTHAWTLNTYTSQSESHQQGGLGWVLRNWKSEVVAAGSKMVESCHGVKRMEAEAVLKGLRHMLSRAPSLPIRVETDSEELGKVLHDEDEDLT
        W  PPT+ W LNT  S SE  + GG+GW+L + + E+V AG+  +     +  +E   +++GL+ +  ++ S PI +E+DS E+ +++  ED DLT
Subjt:  WVTPPTHAWTLNTYTSQSESHQQGGLGWVLRNWKSEVVAAGSKMVESCHGVKRMEAEAVLKGLRHMLSRAPSLPIRVETDSEELGKVLHDEDEDLT

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]6.9e-1035.24Show/hide
Query:  WVTPPTHAWTLNTYTSQSESHQQGGLGWVLRNWKSEVVAAGSKMVESCHGVKRMEAEAVLKGLRHMLSRAPSLPIRVETDSEELGKVLHDEDEDLTEIWW
        W  P +++W LNT  +       GG+GW+LR+ K EV+ A  +++ +   +  +E  A+ +GLR  + +    PI +E+DS E   +LH + +D TEI W
Subjt:  WVTPPTHAWTLNTYTSQSESHQQGGLGWVLRNWKSEVVAAGSKMVESCHGVKRMEAEAVLKGLRHMLSRAPSLPIRVETDSEELGKVLHDEDEDLTEIWW

Query:  IMEEI
        ++EEI
Subjt:  IMEEI

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.1e-2044.76Show/hide
Query:  WVTPPTHAWTLNTYTSQSESHQQGGLGWVLRNWKSEVVAAGSKMVESCHGVKRMEAEAVLKGLRHMLSRAPSLPIRVETDSEELGKVLHDEDEDLTEIWW
        W  PP H WTLN   S S+S  +GG+GW++R+W  ++V AG++ VE+C+ VK +EA A+L+GLR++ +     P+ +ETDS E+  +L+ + EDLT+  W
Subjt:  WVTPPTHAWTLNTYTSQSESHQQGGLGWVLRNWKSEVVAAGSKMVESCHGVKRMEAEAVLKGLRHMLSRAPSLPIRVETDSEELGKVLHDEDEDLTEIWW

Query:  IMEEI
        ++EEI
Subjt:  IMEEI

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]4.5e-0933.04Show/hide
Query:  WVTPPTHAWTLNTYTSQSESHQQGGLGWVLRNWKSEVVAAGSKMVESCHGVKRMEAEAVLKGLRHM-------LSRAPSLPIRVETDSEELGKVLHDEDE
        W  P +++W LNT  +       GG+GW+LR+ K EV+ A  +++ +   +  +E  A+ +GLR +       + +    PI +E+DS E   +LH + +
Subjt:  WVTPPTHAWTLNTYTSQSESHQQGGLGWVLRNWKSEVVAAGSKMVESCHGVKRMEAEAVLKGLRHM-------LSRAPSLPIRVETDSEELGKVLHDEDE

Query:  DLTEIWWIMEEI
        D TEI W++EEI
Subjt:  DLTEIWWIMEEI

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134123.3e-1035.24Show/hide
Query:  WVTPPTHAWTLNTYTSQSESHQQGGLGWVLRNWKSEVVAAGSKMVESCHGVKRMEAEAVLKGLRHMLSRAPSLPIRVETDSEELGKVLHDEDEDLTEIWW
        W  P +++W LNT  +       GG+GW+LR+ K EV+ A  +++ +   +  +E  A+ +GLR  + +    PI +E+DS E   +LH + +D TEI W
Subjt:  WVTPPTHAWTLNTYTSQSESHQQGGLGWVLRNWKSEVVAAGSKMVESCHGVKRMEAEAVLKGLRHMLSRAPSLPIRVETDSEELGKVLHDEDEDLTEIWW

Query:  IMEEI
        ++EEI
Subjt:  IMEEI

A0A6J1CQG0 uncharacterized protein LOC1110132162.2e-0936.46Show/hide
Query:  WVTPPTHAWTLNTYTSQSESHQQGGLGWVLRNWKSEVVAAGSKMVESCHGVKRMEAEAVLKGLRHMLSRAPSLPIRVETDSEELGKVLHDEDEDLT
        W  PPT+ W LNT  S SE  + GG+GW+L + + E+V AG+  +     +  +E   +++GL+ +  ++ S PI +E+DS E+ +++  ED DLT
Subjt:  WVTPPTHAWTLNTYTSQSESHQQGGLGWVLRNWKSEVVAAGSKMVESCHGVKRMEAEAVLKGLRHMLSRAPSLPIRVETDSEELGKVLHDEDEDLT

A0A6J1D5W1 uncharacterized protein LOC1110173291.4e-0528.71Show/hide
Query:  PTHAWTLNTYTSQSESHQQGGLGWVLRNWKSEVVAAGSKMVESCHGVKRMEAEAVLKGLRHMLSRAPSLPIRVETDSEELGKVLHDEDEDLTEIWWIMEE
        P + W LNT  +   +   GGLGW++RN K E+  AG + +     +  +E  A+  G+  ++S + S+ + +E++S E   ++    +++TEI W++++
Subjt:  PTHAWTLNTYTSQSESHQQGGLGWVLRNWKSEVVAAGSKMVESCHGVKRMEAEAVLKGLRHMLSRAPSLPIRVETDSEELGKVLHDEDEDLTEIWWIMEE

Query:  I
        I
Subjt:  I

A0A6J1DNV9 uncharacterized protein LOC1110224035.5e-2144.76Show/hide
Query:  WVTPPTHAWTLNTYTSQSESHQQGGLGWVLRNWKSEVVAAGSKMVESCHGVKRMEAEAVLKGLRHMLSRAPSLPIRVETDSEELGKVLHDEDEDLTEIWW
        W  PP H WTLN   S S+S  +GG+GW++R+W  ++V AG++ VE+C+ VK +EA A+L+GLR++ +     P+ +ETDS E+  +L+ + EDLT+  W
Subjt:  WVTPPTHAWTLNTYTSQSESHQQGGLGWVLRNWKSEVVAAGSKMVESCHGVKRMEAEAVLKGLRHMLSRAPSLPIRVETDSEELGKVLHDEDEDLTEIWW

Query:  IMEEI
        ++EEI
Subjt:  IMEEI

A0A6J1DSV1 uncharacterized protein LOC1110236082.2e-0933.04Show/hide
Query:  WVTPPTHAWTLNTYTSQSESHQQGGLGWVLRNWKSEVVAAGSKMVESCHGVKRMEAEAVLKGLRHM-------LSRAPSLPIRVETDSEELGKVLHDEDE
        W  P +++W LNT  +       GG+GW+LR+ K EV+ A  +++ +   +  +E  A+ +GLR +       + +    PI +E+DS E   +LH + +
Subjt:  WVTPPTHAWTLNTYTSQSESHQQGGLGWVLRNWKSEVVAAGSKMVESCHGVKRMEAEAVLKGLRHM-------LSRAPSLPIRVETDSEELGKVLHDEDE

Query:  DLTEIWWIMEEI
        D TEI W++EEI
Subjt:  DLTEIWWIMEEI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGGGTTACTCCCCCAACACATGCATGGACGCTTAATACATATACTTCTCAGTCAGAGTCACACCAACAGGGAGGATTGGGATGGGTGCTGAGAAATTGGAAGAGCGAAGT
CGTTGCTGCAGGCAGCAAAATGGTAGAGTCGTGCCATGGTGTGAAGAGAATGGAGGCAGAAGCAGTGCTGAAAGGCCTTCGTCATATGCTGTCGCGTGCGCCATCTCTTC
CAATTCGAGTGGAAACCGATTCAGAGGAGCTTGGTAAGGTTTTGCATGATGAAGACGAAGACTTAACAGAAATCTGGTGGATTATGGAAGAAATC
mRNA sequenceShow/hide mRNA sequence
TGGGTTACTCCCCCAACACATGCATGGACGCTTAATACATATACTTCTCAGTCAGAGTCACACCAACAGGGAGGATTGGGATGGGTGCTGAGAAATTGGAAGAGCGAAGT
CGTTGCTGCAGGCAGCAAAATGGTAGAGTCGTGCCATGGTGTGAAGAGAATGGAGGCAGAAGCAGTGCTGAAAGGCCTTCGTCATATGCTGTCGCGTGCGCCATCTCTTC
CAATTCGAGTGGAAACCGATTCAGAGGAGCTTGGTAAGGTTTTGCATGATGAAGACGAAGACTTAACAGAAATCTGGTGGATTATGGAAGAAATC
Protein sequenceShow/hide protein sequence
WVTPPTHAWTLNTYTSQSESHQQGGLGWVLRNWKSEVVAAGSKMVESCHGVKRMEAEAVLKGLRHMLSRAPSLPIRVETDSEELGKVLHDEDEDLTEIWWIMEEI