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MS006642 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006642
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold191:320776..321015
RNA-Seq ExpressionMS006642
SyntenyMS006642
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015381856.1 uncharacterized protein LOC107175052 [Citrus sinensis]7.3e-0437.5Show/hide
Query:  LNTDASWSESHQLGGLGWVLRNWEGEVVAADSKMVESCHGVKRLEAEGVLEGLCHMLSHAPSLLIRVEIDSKELGKLLRD
        +N DA+  E ++L GLG V+RN++GE++AA  K  ++   V+  EA+ VL GL  +   A +  + VE DSK + +L+ +
Subjt:  LNTDASWSESHQLGGLGWVLRNWEGEVVAADSKMVESCHGVKRLEAEGVLEGLCHMLSHAPSLLIRVEIDSKELGKLLRD

XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]2.3e-0538.27Show/hide
Query:  LNTDASWSESHQLGGLGWVLRNWEGEVVAADSKMVESCHGVKRLEAEGVLEGL--CHMLSHAPSLLIRVEIDSKELGKLLR
        LNTDASWSE  ++GG+GW+L +  GE+V A +  +     +  LE   ++ GL   +M S +P   I +E DS E+ +L++
Subjt:  LNTDASWSESHQLGGLGWVLRNWEGEVVAADSKMVESCHGVKRLEAEGVLEGL--CHMLSHAPSLLIRVEIDSKELGKLLR

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.9e-1244.87Show/hide
Query:  LNTDASWSESHQLGGLGWVLRNWEGEVVAADSKMVESCHGVKRLEAEGVLEGLCHMLSHAPSLLIRVEIDSKELGKLL
        LN DASWS+S   GG+GW++R+W+G++V A ++ VE+C+ VK LEA  +LEGL ++ +      + +E DS E+  LL
Subjt:  LNTDASWSESHQLGGLGWVLRNWEGEVVAADSKMVESCHGVKRLEAEGVLEGLCHMLSHAPSLLIRVEIDSKELGKLL

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]5.1e-0535.29Show/hide
Query:  LNTDASWSESHQLGGLGWVLRNWEGEVVAADSKMVESCHGVKRLEAEGVLEGL-------CHMLSHAPSLLIRVEIDSKELGKLL
        LNTDA+W      GG+GW+LR+ +GEV+ AD +++ +   +  LE   + EGL       C  +       I +E DS E   LL
Subjt:  LNTDASWSESHQLGGLGWVLRNWEGEVVAADSKMVESCHGVKRLEAEGVLEGL-------CHMLSHAPSLLIRVEIDSKELGKLL

TrEMBL top hitse value%identityAlignment
A0A5B6YN15 RNase H domain-containing protein (Fragment)6.1e-0441.51Show/hide
Query:  LNTDASWSESHQLGGLGWVLRNWEGEVVAADSKMVESCHGVKRLEAEGVLEGL
        LN DASW     +GG+G V+R+W+G+V+A  +K ++ C      E  G L GL
Subjt:  LNTDASWSESHQLGGLGWVLRNWEGEVVAADSKMVESCHGVKRLEAEGVLEGL

A0A6J1CQG0 uncharacterized protein LOC1110132161.1e-0538.27Show/hide
Query:  LNTDASWSESHQLGGLGWVLRNWEGEVVAADSKMVESCHGVKRLEAEGVLEGL--CHMLSHAPSLLIRVEIDSKELGKLLR
        LNTDASWSE  ++GG+GW+L +  GE+V A +  +     +  LE   ++ GL   +M S +P   I +E DS E+ +L++
Subjt:  LNTDASWSESHQLGGLGWVLRNWEGEVVAADSKMVESCHGVKRLEAEGVLEGL--CHMLSHAPSLLIRVEIDSKELGKLLR

A0A6J1DNV9 uncharacterized protein LOC1110224039.3e-1344.87Show/hide
Query:  LNTDASWSESHQLGGLGWVLRNWEGEVVAADSKMVESCHGVKRLEAEGVLEGLCHMLSHAPSLLIRVEIDSKELGKLL
        LN DASWS+S   GG+GW++R+W+G++V A ++ VE+C+ VK LEA  +LEGL ++ +      + +E DS E+  LL
Subjt:  LNTDASWSESHQLGGLGWVLRNWEGEVVAADSKMVESCHGVKRLEAEGVLEGLCHMLSHAPSLLIRVEIDSKELGKLL

A0A6J1DSV1 uncharacterized protein LOC1110236082.5e-0535.29Show/hide
Query:  LNTDASWSESHQLGGLGWVLRNWEGEVVAADSKMVESCHGVKRLEAEGVLEGL-------CHMLSHAPSLLIRVEIDSKELGKLL
        LNTDA+W      GG+GW+LR+ +GEV+ AD +++ +   +  LE   + EGL       C  +       I +E DS E   LL
Subjt:  LNTDASWSESHQLGGLGWVLRNWEGEVVAADSKMVESCHGVKRLEAEGVLEGL-------CHMLSHAPSLLIRVEIDSKELGKLL

Q75M12 Reverse transcriptase domain-containing protein7.9e-0435.9Show/hide
Query:  LNTDASWSESHQLGGLGWVLRNWEGEVVAADSKMVESCHGVKRLEAEGVLEGLCHMLSHAPSLLIRVEIDSKELGKLL
        LN D S+  + + GG+G +LRN  G V+ +  + ++SC G    E    +EGL H+  H   L I+VE D   + +LL
Subjt:  LNTDASWSESHQLGGLGWVLRNWEGEVVAADSKMVESCHGVKRLEAEGVLEGLCHMLSHAPSLLIRVEIDSKELGKLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein2.7e-0437.5Show/hide
Query:  NTDASWSESHQLGGLGWVLRNWEGEVVAADSKMVESCHGVKRLEAEGV
        NTDA+W+  ++  G+GWVLRN +GEV    ++ +     V   E E +
Subjt:  NTDASWSESHQLGGLGWVLRNWEGEVVAADSKMVESCHGVKRLEAEGV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTTAATACAGATGCGTCTTGGTCAGAATCACACCAACTGGGAGGATTGGGATGGGTGCTGAGAAATTGGGAGGGTGAAGTCGTTGCTGCAGACAGCAAAATGGTGGAGTC
GTGCCATGGTGTGAAGAGATTGGAGGCGGAAGGAGTGTTGGAAGGCCTTTGTCATATGCTGTCGCATGCGCCATCTCTTTTAATTCGAGTGGAAATCGATTCAAAGGAGC
TTGGTAAGCTTTTGCGTGAT
mRNA sequenceShow/hide mRNA sequence
CTTAATACAGATGCGTCTTGGTCAGAATCACACCAACTGGGAGGATTGGGATGGGTGCTGAGAAATTGGGAGGGTGAAGTCGTTGCTGCAGACAGCAAAATGGTGGAGTC
GTGCCATGGTGTGAAGAGATTGGAGGCGGAAGGAGTGTTGGAAGGCCTTTGTCATATGCTGTCGCATGCGCCATCTCTTTTAATTCGAGTGGAAATCGATTCAAAGGAGC
TTGGTAAGCTTTTGCGTGAT
Protein sequenceShow/hide protein sequence
LNTDASWSESHQLGGLGWVLRNWEGEVVAADSKMVESCHGVKRLEAEGVLEGLCHMLSHAPSLLIRVEIDSKELGKLLRD