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MS006646 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006646
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold191:380561..380899
RNA-Seq ExpressionMS006646
SyntenyMS006646
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAX95313.1 hypothetical protein [Oryza sativa Japonica Group]2.9e-0635.71Show/hide
Query:  PNAEWIYINTDASSNPWLPQTGVGALVQDKDLNIIFAQSQFVDVRFSPLHAELVAIKEAPRLALWLGFHHICAESDCLEVVKLLSSHMEILGETEVLV
        P   W+ +N D S +  L Q G+G + ++   ++IF+   F+D     L AEL+A+KE+  LAL      IC E+DCLE V L+ S   +  E   L+
Subjt:  PNAEWIYINTDASSNPWLPQTGVGALVQDKDLNIIFAQSQFVDVRFSPLHAELVAIKEAPRLALWLGFHHICAESDCLEVVKLLSSHMEILGETEVLV

ABA99010.1 expressed protein [Oryza sativa Japonica Group]1.0e-0639.56Show/hide
Query:  PNAEWIYINTDASSNPWLPQTGVGALVQDKDLNIIFAQSQFVDVRFSPLHAELVAIKEAPRLALWLGFHHICAESDCLEVVKLLSSHMEIL
        P   W+ INTD S +      GVGA+V+D    ++ A S+ +D   S L AEL+A KE   LAL      +  E+DCLE +KLL S  +++
Subjt:  PNAEWIYINTDASSNPWLPQTGVGALVQDKDLNIIFAQSQFVDVRFSPLHAELVAIKEAPRLALWLGFHHICAESDCLEVVKLLSSHMEIL

CAH66131.1 OSIGBa0135L04.5 [Oryza sativa]6.5e-0637.5Show/hide
Query:  ELPNAEWIYINTDASSNPWLPQTGVGALVQDKDLNIIFAQSQFVDVRFSPLHAELVAIKEAPRLALWLGFHHICAESDCLEVVKLLSS
        E PN  W+ +N D S +    + G+GA++++    +IF+   F+D    PL  EL+A KE   +AL      I  E DC E VKL+SS
Subjt:  ELPNAEWIYINTDASSNPWLPQTGVGALVQDKDLNIIFAQSQFVDVRFSPLHAELVAIKEAPRLALWLGFHHICAESDCLEVVKLLSS

EAY83065.1 hypothetical protein OsI_38284 [Oryza sativa Indica Group]2.2e-0634.23Show/hide
Query:  SPDLQLPRSSQELPNAEWIYINTDASSNPWLPQTGVGALVQDKDLNIIFAQSQFVDVRFSPLHAELVAIKEAPRLALWLGFHHICAESDCLEVVKLLSSH
        +P    P    E P+  W+ +N D S      + G+GA+++D   N+IFA    + V  S + AEL+A KE   +AL   F     E+DCLEV  L+ S 
Subjt:  SPDLQLPRSSQELPNAEWIYINTDASSNPWLPQTGVGALVQDKDLNIIFAQSQFVDVRFSPLHAELVAIKEAPRLALWLGFHHICAESDCLEVVKLLSSH

Query:  MEILGETEVLV
         ++L E   +V
Subjt:  MEILGETEVLV

EEC83100.1 hypothetical protein OsI_28249 [Oryza sativa Indica Group]2.2e-0636.73Show/hide
Query:  PNAEWIYINTDASSNPWLPQTGVGALVQDKDLNIIFAQSQFVDVRFSPLHAELVAIKEAPRLALWLGFHHICAESDCLEVVKLLSSHMEILGETEVLV
        P A W+ +N D S +P     G+GA++++ +  +IFA    +    S L AELVA KE   LAL   F  I  E+DCLE+VKL++   +++ +   L+
Subjt:  PNAEWIYINTDASSNPWLPQTGVGALVQDKDLNIIFAQSQFVDVRFSPLHAELVAIKEAPRLALWLGFHHICAESDCLEVVKLLSSHMEILGETEVLV

TrEMBL top hitse value%identityAlignment
A2ZKD1 RNase H domain-containing protein1.1e-0634.23Show/hide
Query:  SPDLQLPRSSQELPNAEWIYINTDASSNPWLPQTGVGALVQDKDLNIIFAQSQFVDVRFSPLHAELVAIKEAPRLALWLGFHHICAESDCLEVVKLLSSH
        +P    P    E P+  W+ +N D S      + G+GA+++D   N+IFA    + V  S + AEL+A KE   +AL   F     E+DCLEV  L+ S 
Subjt:  SPDLQLPRSSQELPNAEWIYINTDASSNPWLPQTGVGALVQDKDLNIIFAQSQFVDVRFSPLHAELVAIKEAPRLALWLGFHHICAESDCLEVVKLLSSH

Query:  MEILGETEVLV
         ++L E   +V
Subjt:  MEILGETEVLV

A3CHL3 RNase H domain-containing protein4.8e-0739.56Show/hide
Query:  PNAEWIYINTDASSNPWLPQTGVGALVQDKDLNIIFAQSQFVDVRFSPLHAELVAIKEAPRLALWLGFHHICAESDCLEVVKLLSSHMEIL
        P   W+ INTD S +      GVGA+V+D    ++ A S+ +D   S L AEL+A KE   LAL      +  E+DCLE +KLL S  +++
Subjt:  PNAEWIYINTDASSNPWLPQTGVGALVQDKDLNIIFAQSQFVDVRFSPLHAELVAIKEAPRLALWLGFHHICAESDCLEVVKLLSSHMEIL

B8BBX0 Reverse transcriptase domain-containing protein1.1e-0636.73Show/hide
Query:  PNAEWIYINTDASSNPWLPQTGVGALVQDKDLNIIFAQSQFVDVRFSPLHAELVAIKEAPRLALWLGFHHICAESDCLEVVKLLSSHMEILGETEVLV
        P A W+ +N D S +P     G+GA++++ +  +IFA    +    S L AELVA KE   LAL   F  I  E+DCLE+VKL++   +++ +   L+
Subjt:  PNAEWIYINTDASSNPWLPQTGVGALVQDKDLNIIFAQSQFVDVRFSPLHAELVAIKEAPRLALWLGFHHICAESDCLEVVKLLSSHMEILGETEVLV

Q2QQB4 Expressed protein4.8e-0739.56Show/hide
Query:  PNAEWIYINTDASSNPWLPQTGVGALVQDKDLNIIFAQSQFVDVRFSPLHAELVAIKEAPRLALWLGFHHICAESDCLEVVKLLSSHMEIL
        P   W+ INTD S +      GVGA+V+D    ++ A S+ +D   S L AEL+A KE   LAL      +  E+DCLE +KLL S  +++
Subjt:  PNAEWIYINTDASSNPWLPQTGVGALVQDKDLNIIFAQSQFVDVRFSPLHAELVAIKEAPRLALWLGFHHICAESDCLEVVKLLSSHMEIL

Q53JP3 Retrotransposon protein, putative, unclassified, expressed1.4e-0635.71Show/hide
Query:  PNAEWIYINTDASSNPWLPQTGVGALVQDKDLNIIFAQSQFVDVRFSPLHAELVAIKEAPRLALWLGFHHICAESDCLEVVKLLSSHMEILGETEVLV
        P   W+ +N D S +  L Q G+G + ++   ++IF+   F+D     L AEL+A+KE+  LAL      IC E+DCLE V L+ S   +  E   L+
Subjt:  PNAEWIYINTDASSNPWLPQTGVGALVQDKDLNIIFAQSQFVDVRFSPLHAELVAIKEAPRLALWLGFHHICAESDCLEVVKLLSSHMEILGETEVLV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCGCCGGATCTTCAGCTTCCTCGAAGCTCACAGGAGTTACCCAATGCCGAGTGGATCTACATTAATACTGATGCTTCTTCCAATCCATGGCTTCCTCAAACAGG
AGTAGGAGCTTTAGTTCAAGATAAAGATTTGAACATCATTTTTGCACAGTCTCAATTTGTGGATGTCCGATTCTCACCTTTGCATGCAGAATTGGTGGCCATTAAGGAGG
CTCCCCGCCTTGCTCTCTGGTTGGGGTTCCATCATATTTGCGCGGAGTCTGATTGTCTTGAAGTCGTGAAGCTTCTTTCTTCACACATGGAAATTTTGGGAGAGACGGAG
GTTTTGGTT
mRNA sequenceShow/hide mRNA sequence
ATGGATTCGCCGGATCTTCAGCTTCCTCGAAGCTCACAGGAGTTACCCAATGCCGAGTGGATCTACATTAATACTGATGCTTCTTCCAATCCATGGCTTCCTCAAACAGG
AGTAGGAGCTTTAGTTCAAGATAAAGATTTGAACATCATTTTTGCACAGTCTCAATTTGTGGATGTCCGATTCTCACCTTTGCATGCAGAATTGGTGGCCATTAAGGAGG
CTCCCCGCCTTGCTCTCTGGTTGGGGTTCCATCATATTTGCGCGGAGTCTGATTGTCTTGAAGTCGTGAAGCTTCTTTCTTCACACATGGAAATTTTGGGAGAGACGGAG
GTTTTGGTT
Protein sequenceShow/hide protein sequence
MDSPDLQLPRSSQELPNAEWIYINTDASSNPWLPQTGVGALVQDKDLNIIFAQSQFVDVRFSPLHAELVAIKEAPRLALWLGFHHICAESDCLEVVKLLSSHMEILGETE
VLV