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MS006653 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006653
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationscaffold677:84904..85044
RNA-Seq ExpressionMS006653
SyntenyMS006653
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0042393 - histone binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046503.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]6.0e-0661.7Show/hide
Query:  FKIDVSKDLEQNLDEFNQILLDLSDIDEKIVDKNKVIILLNSLPKSY
        +KID SK LE+NL+EF +I++DL++I EK+ D+N+ IILLNSLPK+Y
Subjt:  FKIDVSKDLEQNLDEFNQILLDLSDIDEKIVDKNKVIILLNSLPKSY
KAA0050719.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]1.3e-0557.45Show/hide
Query:  FKIDVSKDLEQNLDEFNQILLDLSDIDEKIVDKNKVIILLNSLPKSY
        +K+D SK LE+NLDEF +I++DL++I EK+ D+N+ +ILLNSLP++Y
Subjt:  FKIDVSKDLEQNLDEFNQILLDLSDIDEKIVDKNKVIILLNSLPKSY
KAA0060177.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.0e-0557.45Show/hide
Query:  FKIDVSKDLEQNLDEFNQILLDLSDIDEKIVDKNKVIILLNSLPKSY
        +K+D SK LE+NLD+F +I++DL++I EK+ D+N+V+ILLNSLP++Y
Subjt:  FKIDVSKDLEQNLDEFNQILLDLSDIDEKIVDKNKVIILLNSLPKSY
KAA0067607.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]4.6e-0659.57Show/hide
Query:  FKIDVSKDLEQNLDEFNQILLDLSDIDEKIVDKNKVIILLNSLPKSY
        +K+D SK LE+NLDEF +I++DLS+I EK+ D+N+ +ILLNSLP++Y
Subjt:  FKIDVSKDLEQNLDEFNQILLDLSDIDEKIVDKNKVIILLNSLPKSY
TYK25306.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]1.3e-0557.45Show/hide
Query:  FKIDVSKDLEQNLDEFNQILLDLSDIDEKIVDKNKVIILLNSLPKSY
        +K+D SK LE+NLDEF +I++DL++I EK+ D+N+ +ILLNSLP++Y
Subjt:  FKIDVSKDLEQNLDEFNQILLDLSDIDEKIVDKNKVIILLNSLPKSY
TrEMBL top hitse value%identityAlignment
A0A5A7UB25 Putative gag-pol polyprotein6.5e-0657.45Show/hide
Query:  FKIDVSKDLEQNLDEFNQILLDLSDIDEKIVDKNKVIILLNSLPKSY
        +K+D SK LE+NLDEF +I++DL++I EK+ D+N+ +ILLNSLP++Y
Subjt:  FKIDVSKDLEQNLDEFNQILLDLSDIDEKIVDKNKVIILLNSLPKSY
A0A5A7V025 Retrovirus-related Pol polyprotein from transposon TNT 1-945.0e-0657.45Show/hide
Query:  FKIDVSKDLEQNLDEFNQILLDLSDIDEKIVDKNKVIILLNSLPKSY
        +K+D SK LE+NLD+F +I++DL++I EK+ D+N+V+ILLNSLP++Y
Subjt:  FKIDVSKDLEQNLDEFNQILLDLSDIDEKIVDKNKVIILLNSLPKSY
A0A5A7VKC2 Retrotransposon protein, putative, Ty1-copia subclass2.2e-0659.57Show/hide
Query:  FKIDVSKDLEQNLDEFNQILLDLSDIDEKIVDKNKVIILLNSLPKSY
        +K+D SK LE+NLDEF +I++DLS+I EK+ D+N+ +ILLNSLP++Y
Subjt:  FKIDVSKDLEQNLDEFNQILLDLSDIDEKIVDKNKVIILLNSLPKSY
A0A5D3BRV3 Retrovirus-related Pol polyprotein from transposon TNT 1-942.9e-0661.7Show/hide
Query:  FKIDVSKDLEQNLDEFNQILLDLSDIDEKIVDKNKVIILLNSLPKSY
        +KID SK LE+NL+EF +I++DL++I EK+ D+N+ IILLNSLPK+Y
Subjt:  FKIDVSKDLEQNLDEFNQILLDLSDIDEKIVDKNKVIILLNSLPKSY
A0A5D3DNU1 Putative gag-pol polyprotein6.5e-0657.45Show/hide
Query:  FKIDVSKDLEQNLDEFNQILLDLSDIDEKIVDKNKVIILLNSLPKSY
        +K+D SK LE+NLDEF +I++DL++I EK+ D+N+ +ILLNSLP++Y
Subjt:  FKIDVSKDLEQNLDEFNQILLDLSDIDEKIVDKNKVIILLNSLPKSY
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTAAAATAGATGTGTCCAAGGATCTAGAACAGAACTTAGATGAGTTCAACCAAATTCTACTTGACCTTAGCGACATAGATGAGAAAATTGTCGACAAAAATAAGGTTAT
AATCCTATTAAACTCACTTCCGAAATCTTAC
mRNA sequenceShow/hide mRNA sequence
TTTAAAATAGATGTGTCCAAGGATCTAGAACAGAACTTAGATGAGTTCAACCAAATTCTACTTGACCTTAGCGACATAGATGAGAAAATTGTCGACAAAAATAAGGTTAT
AATCCTATTAAACTCACTTCCGAAATCTTAC
Protein sequenceShow/hide protein sequence
FKIDVSKDLEQNLDEFNQILLDLSDIDEKIVDKNKVIILLNSLPKSY