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MS006659 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006659
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description50S ribosomal protein L12
Genome locationscaffold677:165548..165685
RNA-Seq ExpressionMS006659
SyntenyMS006659
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000206 - Ribosomal protein L7/L12
IPR013823 - Ribosomal protein L7/L12, C-terminal
IPR014719 - Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB2610231.1 50S ribosomal protein L12-1 [Pyrus ussuriensis x Pyrus communis]1.2e-0676.09Show/hide
Query:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKELIERL
        R+AVIK V ALTSLALKEAKELIE LPKK+REGISK+EA+E  ++L
Subjt:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKELIERL

RXH89406.1 hypothetical protein DVH24_031763 [Malus domestica]1.2e-0676.09Show/hide
Query:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKELIERL
        R+AVIK V ALTSLALKEAKELIE LPKK+REGISK+EA+E  ++L
Subjt:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKELIERL

TKY67758.1 50S ribosomal protein L12-1 [Spatholobus suberectus]9.1e-0773.91Show/hide
Query:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKELIERL
        R+AVIKTV ALTSLALKEAKELIE LPKK++EG+SKEEA++  ++L
Subjt:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKELIERL

TQD98087.1 hypothetical protein C1H46_016352 [Malus baccata]1.2e-0676.09Show/hide
Query:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKELIERL
        R+AVIK V ALTSLALKEAKELIE LPKK+REGISK+EA+E  ++L
Subjt:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKELIERL

XP_008341453.2 50S ribosomal protein L12-1, chloroplastic [Malus domestica]1.2e-0676.09Show/hide
Query:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKELIERL
        R+AVIK V ALTSLALKEAKELIE LPKK+REGISK+EA+E  ++L
Subjt:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKELIERL

TrEMBL top hitse value%identityAlignment
A0A498HKH5 Uncharacterized protein5.7e-0776.09Show/hide
Query:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKELIERL
        R+AVIK V ALTSLALKEAKELIE LPKK+REGISK+EA+E  ++L
Subjt:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKELIERL

A0A498J2K9 Uncharacterized protein5.7e-0776.09Show/hide
Query:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKELIERL
        R+AVIK V ALTSLALKEAKELIE LPKK+REGISK+EA+E  ++L
Subjt:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKELIERL

A0A540MH53 Uncharacterized protein5.7e-0776.09Show/hide
Query:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKELIERL
        R+AVIK V ALTSLALKEAKELIE LPKK+REGISK+EA+E  ++L
Subjt:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKELIERL

A0A540MW00 Uncharacterized protein5.7e-0776.09Show/hide
Query:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKELIERL
        R+AVIK V ALTSLALKEAKELIE LPKK+REGISK+EA+E  ++L
Subjt:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKELIERL

A0A5N5G8Z0 50S ribosomal protein L12-15.7e-0776.09Show/hide
Query:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKELIERL
        R+AVIK V ALTSLALKEAKELIE LPKK+REGISK+EA+E  ++L
Subjt:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKELIERL

SwissProt top hitse value%identityAlignment
P02398 50S ribosomal protein L12, chloroplastic4.2e-0763.04Show/hide
Query:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKELIERL
        R++VIK V ALTSL LKEAKELIE LPKK +EG+SK++A++  ++L
Subjt:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKELIERL

P24929 50S ribosomal protein L12, chloroplastic2.9e-0867.39Show/hide
Query:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKELIERL
        R+A IK V ALTSLALKEAKELIE LPKK++EG+SK+EA++  ++L
Subjt:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKELIERL

P36210 50S ribosomal protein L12-1, chloroplastic1.0e-0878.05Show/hide
Query:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE
        R+AVIK V ALTSLALKEAKELIE LPKK++EGI+K+EA+E
Subjt:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE

P36212 50S ribosomal protein L12-3, chloroplastic1.0e-0878.05Show/hide
Query:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE
        R+AVIK V ALTSLALKEAKELIE LPKK++EGI+K+EA+E
Subjt:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE

P36688 50S ribosomal protein L12, chloroplastic2.9e-0867.39Show/hide
Query:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKELIERL
        R+A IK V ALTSLALKEAKELIE LPKK++EG+SK+EA++  ++L
Subjt:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKELIERL

Arabidopsis top hitse value%identityAlignment
AT3G06040.1 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein1.4e-0550Show/hide
Query:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKELIERL
        ++ VIK V   TSL LKEAKEL+E +P   ++G++KEEA E+I ++
Subjt:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKELIERL

AT3G27830.1 ribosomal protein L12-A7.2e-1078.05Show/hide
Query:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE
        R+AVIK V ALTSLALKEAKELIE LPKK++EGI+K+EA+E
Subjt:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE

AT3G27840.1 ribosomal protein L12-B5.7e-0758.54Show/hide
Query:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE
        R+AVI  + A+TSL+L E+KELIE  PKK++EG++K+EA+E
Subjt:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE

AT3G27850.1 ribosomal protein L12-C7.2e-1078.05Show/hide
Query:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE
        R+AVIK V ALTSLALKEAKELIE LPKK++EGI+K+EA+E
Subjt:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE

AT4G36420.1 Ribosomal protein L12 family protein8.2e-0650Show/hide
Query:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKELIERL
        ++ VIK V  +T+L LKEAK+L+E  P   ++G+SKEEA+++IE+L
Subjt:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKELIERL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CGCCTTGCTGTTATTAAGACTGTTGGGGCTTTGACGAGCTTGGCATTGAAGGAGGCAAAAGAGCTCATTGAAGATTTGCCAAAGAAGTATAGAGAAGGGATTTCGAAGGA
AGAGGCGAAGGAGCTCATTGAAAGGTTA
mRNA sequenceShow/hide mRNA sequence
CGCCTTGCTGTTATTAAGACTGTTGGGGCTTTGACGAGCTTGGCATTGAAGGAGGCAAAAGAGCTCATTGAAGATTTGCCAAAGAAGTATAGAGAAGGGATTTCGAAGGA
AGAGGCGAAGGAGCTCATTGAAAGGTTA
Protein sequenceShow/hide protein sequence
RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKELIERL