CuGenDBv2

Gene ID	MS006661
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Reverse transcriptase domain-containing protein
Genome location	scaffold677:276337..276681
RNA-Seq Expression	MS006661
Synteny	MS006661
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_013694835.1 uncharacterized protein LOC106398878 [Brassica napus]

2.1e-20

45.13

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Query:  AIPSYAMSYFLLPKKFCLDISWAMTKFWWNEFEEENTI--ISLDKICWPKEPRGLNFHDLELFNKVLLAKQIWRLITNASLLFSKVVKGIYAPYSSLLQA
        A+P YAMS F LPK  C +++ AM  FWW   E++  I  +S DK+C PK+  G+ F D+ELFN+ LLAKQ WR++++ S L S+ +K  Y P  + L A
Subjt:  AIPSYAMSYFLLPKKFCLDISWAMTKFWWNEFEEENTI--ISLDKICWPKEPRGLNFHDLELFNKVLLAKQIWRLITNASLLFSKVVKGIYAPYSSLLQA

Query:  EFGSQPYYLWQGL
          GS+P Y W+ +
Subjt:  EFGSQPYYLWQGL

XP_023920384.1 uncharacterized protein LOC112031911 [Quercus suber]

9.2e-21

46.49

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Query:  RAIPSYAMSYFLLPKKFCLDISWAMTKFWWNEFEEENTI--ISLDKICWPKEPRGLNFHDLELFNKVLLAKQIWRLITNASLLFSKVVKGIYAPYSSLLQ
        +A+P+Y+MS FLLP K C +++  + +FWW + + E  +  +S DK+C PKE  GL F DL+ FN  LLAKQ WRL TN++ LFS V K  Y P  S ++
Subjt:  RAIPSYAMSYFLLPKKFCLDISWAMTKFWWNEFEEENTI--ISLDKICWPKEPRGLNFHDLELFNKVLLAKQIWRLITNASLLFSKVVKGIYAPYSSLLQ

Query:  AEFGSQPYYLWQGL
        A  G +P Y W+ L
Subjt:  AEFGSQPYYLWQGL

XP_030939647.1 uncharacterized protein LOC115964488 [Quercus lobata]

2.1e-20

44.74

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Query:  RAIPSYAMSYFLLPKKFCLDISWAMTKFWWNEFEEENTI--ISLDKICWPKEPRGLNFHDLELFNKVLLAKQIWRLITNASLLFSKVVKGIYAPYSSLLQ
        +A+PSY MS F LP K C +++  + +FWW + ++E  +  +S +K+C PKE  G+ F DL+ FN  LLAKQ WRL TN+S LF +V K  Y P    + 
Subjt:  RAIPSYAMSYFLLPKKFCLDISWAMTKFWWNEFEEENTI--ISLDKICWPKEPRGLNFHDLELFNKVLLAKQIWRLITNASLLFSKVVKGIYAPYSSLLQ

Query:  AEFGSQPYYLWQGL
        AE G QP Y W+ +
Subjt:  AEFGSQPYYLWQGL

XP_030970322.1 uncharacterized protein LOC115990651 [Quercus lobata]

2.1e-20

44.74

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Query:  RAIPSYAMSYFLLPKKFCLDISWAMTKFWWNEFEEENTI--ISLDKICWPKEPRGLNFHDLELFNKVLLAKQIWRLITNASLLFSKVVKGIYAPYSSLLQ
        +AIP+Y M  F LPK  C DI+  + K+WW + ++E  I  I+ +K+C PK   G+ F D+  FN  +LAKQ WRLI +   LF KV K  Y P SS ++
Subjt:  RAIPSYAMSYFLLPKKFCLDISWAMTKFWWNEFEEENTI--ISLDKICWPKEPRGLNFHDLELFNKVLLAKQIWRLITNASLLFSKVVKGIYAPYSSLLQ

Query:  AEFGSQPYYLWQGL
        AE G+ P Y+W+ L
Subjt:  AEFGSQPYYLWQGL

XP_030970757.1 uncharacterized protein LOC115991156 [Quercus lobata]

1.4e-21

45.61

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Query:  RAIPSYAMSYFLLPKKFCLDISWAMTKFWWNEFEEENTI--ISLDKICWPKEPRGLNFHDLELFNKVLLAKQIWRLITNASLLFSKVVKGIYAPYSSLLQ
        +A+PSY+MS FLL KK C +++  + +FWW + ++E  +  +S DK+C PKE  G+ F DL +FN VLLAKQ WRL TN++ LF+++ K  Y P+ S L+
Subjt:  RAIPSYAMSYFLLPKKFCLDISWAMTKFWWNEFEEENTI--ISLDKICWPKEPRGLNFHDLELFNKVLLAKQIWRLITNASLLFSKVVKGIYAPYSSLLQ

Query:  AEFGSQPYYLWQGL
        A  G  P Y W+ +
Subjt:  AEFGSQPYYLWQGL

TrEMBL top hits

e value

%identity

Alignment

A0A2N9GLL3 Reverse transcriptase domain-containing protein

8.4e-20

48.65

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Query:  RAIPSYAMSYFLLPKKFCLDISWAMTKFWWNEFEEENTI--ISLDKICWPKEPRGLNFHDLELFNKVLLAKQIWRLITNASLLFSKVVKGIYAPYSSLLQ
        ++IP+Y MS F LPK +C D+   + KFWW + E E+ I  +S  K+C PK   GL F DL  FN  LLAKQ WRL+ N   LF +V K  Y   SS LQ
Subjt:  RAIPSYAMSYFLLPKKFCLDISWAMTKFWWNEFEEENTI--ISLDKICWPKEPRGLNFHDLELFNKVLLAKQIWRLITNASLLFSKVVKGIYAPYSSLLQ

Query:  AEFGSQPYYLW
        A+ GS P Y+W
Subjt:  AEFGSQPYYLW

A0A6J0JI21 uncharacterized protein LOC108807499

3.8e-20

44.25

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Query:  AIPSYAMSYFLLPKKFCLDISWAMTKFWWNEFEEENTI--ISLDKICWPKEPRGLNFHDLELFNKVLLAKQIWRLITNASLLFSKVVKGIYAPYSSLLQA
        A+P Y MS F LPK  C +IS  M KFWW        I  I+ DK+C PKE  G+ F +LE+FN+ LLAKQ W+++T+ S L ++ +K  Y P S  L+A
Subjt:  AIPSYAMSYFLLPKKFCLDISWAMTKFWWNEFEEENTI--ISLDKICWPKEPRGLNFHDLELFNKVLLAKQIWRLITNASLLFSKVVKGIYAPYSSLLQA

Query:  EFGSQPYYLWQGL
        + G +P + W+ L
Subjt:  EFGSQPYYLWQGL

A0A6J0JJV4 uncharacterized protein LOC108807494

3.8e-20

44.25

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Query:  AIPSYAMSYFLLPKKFCLDISWAMTKFWWNEFEEENTI--ISLDKICWPKEPRGLNFHDLELFNKVLLAKQIWRLITNASLLFSKVVKGIYAPYSSLLQA
        A+P Y MS F LPK  C +IS  M KFWW        I  I+ DK+C PKE  G+ F +LE+FN+ LLAKQ W+++T+ S L ++ +K  Y P S  L+A
Subjt:  AIPSYAMSYFLLPKKFCLDISWAMTKFWWNEFEEENTI--ISLDKICWPKEPRGLNFHDLELFNKVLLAKQIWRLITNASLLFSKVVKGIYAPYSSLLQA

Query:  EFGSQPYYLWQGL
        + G +P + W+ L
Subjt:  EFGSQPYYLWQGL

A0A6P6UYP5 uncharacterized protein LOC113715847

1.4e-19

45.13

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Query:  AIPSYAMSYFLLPKKFCLDISWAMTKFWWNEFEEENTI--ISLDKICWPKEPRGLNFHDLELFNKVLLAKQIWRLITNASLLFSKVVKGIYAPYSSLLQA
        A+P+YAMS F LPKK C DIS  MT +WW E   +N I  +S  K+   +   GL F D+E +NK LL KQIWR++T  +LL SK+++  Y P  S+L  
Subjt:  AIPSYAMSYFLLPKKFCLDISWAMTKFWWNEFEEENTI--ISLDKICWPKEPRGLNFHDLELFNKVLLAKQIWRLITNASLLFSKVVKGIYAPYSSLLQA

Query:  EFGSQPYYLWQGL
        +      ++WQGL
Subjt:  EFGSQPYYLWQGL

A0A7N2L6Z9 Reverse transcriptase domain-containing protein

3.8e-20

43.86

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Query:  RAIPSYAMSYFLLPKKFCLDISWAMTKFWWNEFEEENTI--ISLDKICWPKEPRGLNFHDLELFNKVLLAKQIWRLITNASLLFSKVVKGIYAPYSSLLQ
        +AIP+Y MS FLLPK  C ++   M  FWW +  +E+ +  IS  K+C PK   GL F +L  FN  LLAKQ WR++TN   L ++++K  Y PY  +L 
Subjt:  RAIPSYAMSYFLLPKKFCLDISWAMTKFWWNEFEEENTI--ISLDKICWPKEPRGLNFHDLELFNKVLLAKQIWRLITNASLLFSKVVKGIYAPYSSLLQ

Query:  AEFGSQPYYLWQGL
        A  GS P Y W+ +
Subjt:  AEFGSQPYYLWQGL

SwissProt top hits

e value

%identity

Alignment

P93295 Uncharacterized mitochondrial protein AtMg00310

7.6e-18

40.35

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Query:  AIPSYAMSYFLLPKKFCLDISWAMTKFWWNEFEEENTI--ISLDKICWPKE-PRGLNFHDLELFNKVLLAKQIWRLITNASLLFSKVVKGIYAPYSSLLQ
        A+P YAMS F L K  C  ++ AMT+FWW+  E +  I  ++  K+C  KE   GL F DL  FN+ LLAKQ +R+I     L S++++  Y P+SS+++
Subjt:  AIPSYAMSYFLLPKKFCLDISWAMTKFWWNEFEEENTI--ISLDKICWPKE-PRGLNFHDLELFNKVLLAKQIWRLITNASLLFSKVVKGIYAPYSSLLQ

Query:  AEFGSQPYYLWQGL
           G++P Y W+ +
Subjt:  AEFGSQPYYLWQGL

Arabidopsis top hits

e value

%identity

Alignment

AT4G29090.1 Ribonuclease H-like superfamily protein

3.3e-16

36.28

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Query:  AIPSYAMSYFLLPKKFCLDISWAMTKFWWNEFEEENTI--ISLDKICWPKEPRGLNFHDLELFNKVLLAKQIWRLITNASLLFSKVVKGIYAPYSSLLQA
        A+P+Y M+ FLLPK  C  I   +  FWW   +E   +   + D +   K   G+ F D+E FN  LL KQ+WR+++    L +KV K  Y   S  L A
Subjt:  AIPSYAMSYFLLPKKFCLDISWAMTKFWWNEFEEENTI--ISLDKICWPKEPRGLNFHDLELFNKVLLAKQIWRLITNASLLFSKVVKGIYAPYSSLLQA

Query:  EFGSQPYYLWQGL
          GS+P ++W+ +
Subjt:  EFGSQPYYLWQGL

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

5.4e-19

40.35

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Query:  AIPSYAMSYFLLPKKFCLDISWAMTKFWWNEFEEENTI--ISLDKICWPKE-PRGLNFHDLELFNKVLLAKQIWRLITNASLLFSKVVKGIYAPYSSLLQ
        A+P YAMS F L K  C  ++ AMT+FWW+  E +  I  ++  K+C  KE   GL F DL  FN+ LLAKQ +R+I     L S++++  Y P+SS+++
Subjt:  AIPSYAMSYFLLPKKFCLDISWAMTKFWWNEFEEENTI--ISLDKICWPKE-PRGLNFHDLELFNKVLLAKQIWRLITNASLLFSKVVKGIYAPYSSLLQ

Query:  AEFGSQPYYLWQGL
           G++P Y W+ +
Subjt:  AEFGSQPYYLWQGL

Sequences

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CDS sequence

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CGAGCTATTCCATCATATGCTATGAGCTACTTTCTACTTCCAAAAAAATTTTGTCTTGATATTTCTTGGGCCATGACTAAGTTTTGGTGGAACGAATTCGAGGAAGAAAA
TACAATAATAAGCTTGGACAAGATATGTTGGCCGAAGGAGCCTAGGGGTCTTAATTTTCATGATTTGGAATTGTTTAACAAGGTTCTTCTTGCTAAACAAATTTGGAGAC
TCATCACTAATGCTTCTTTGCTTTTTTCTAAGGTTGTTAAAGGGATCTATGCTCCATATTCTTCCCTACTCCAAGCAGAGTTTGGATCTCAACCTTATTATTTATGGCAA
GGCTTA

mRNA sequence

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Protein sequence

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RAIPSYAMSYFLLPKKFCLDISWAMTKFWWNEFEEENTIISLDKICWPKEPRGLNFHDLELFNKVLLAKQIWRLITNASLLFSKVVKGIYAPYSSLLQAEFGSQPYYLWQ
GL

MS006661 (gene) of Bitter gourd (TR) v1 genome