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MS006663 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006663
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold677:364528..364758
RNA-Seq ExpressionMS006663
SyntenyMS006663
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]8.3e-1346.97Show/hide
Query:  IWNFMGPKKVKFFLWTLFYKG-NTTERIQRKLPYWALSPSVCILCLKNEEMVNHIFLHCPFASRAW
        +W    PKK KFF+WTL +   NT +R+Q++LP W LSP+ C +C K++E +NH+F+HCP++ + W
Subjt:  IWNFMGPKKVKFFLWTLFYKG-NTTERIQRKLPYWALSPSVCILCLKNEEMVNHIFLHCPFASRAW
KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.1e-1246.97Show/hide
Query:  IWNFMGPKKVKFFLWTLFYKG-NTTERIQRKLPYWALSPSVCILCLKNEEMVNHIFLHCPFASRAW
        +W    PKK KFF+WTL +   NT +R+Q++LP W LSP+ C +C K++E +NH+F+HCP++ + W
Subjt:  IWNFMGPKKVKFFLWTLFYKG-NTTERIQRKLPYWALSPSVCILCLKNEEMVNHIFLHCPFASRAW
KAA0044451.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.9e-1348.48Show/hide
Query:  IWNFMGPKKVKFFLWTLFYKG-NTTERIQRKLPYWALSPSVCILCLKNEEMVNHIFLHCPFASRAW
        +W    PKK KFF+WTL +   NT +R+Q++LP WALSP+ C +C K++E +NH+F+HCP++ + W
Subjt:  IWNFMGPKKVKFFLWTLFYKG-NTTERIQRKLPYWALSPSVCILCLKNEEMVNHIFLHCPFASRAW
KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.1e-1246.97Show/hide
Query:  IWNFMGPKKVKFFLWTLFYKG-NTTERIQRKLPYWALSPSVCILCLKNEEMVNHIFLHCPFASRAW
        +W    PKK KFF+WTL +   NT +R+Q++LP W LSP+ C +C K++E +NH+F+HCP++ + W
Subjt:  IWNFMGPKKVKFFLWTLFYKG-NTTERIQRKLPYWALSPSVCILCLKNEEMVNHIFLHCPFASRAW
TYK29578.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.9e-1348.48Show/hide
Query:  IWNFMGPKKVKFFLWTLFYKG-NTTERIQRKLPYWALSPSVCILCLKNEEMVNHIFLHCPFASRAW
        +W    PKK KFF+WTL +   NT +R+Q++LP WALSP+ C +C K++E +NH+F+HCP++ + W
Subjt:  IWNFMGPKKVKFFLWTLFYKG-NTTERIQRKLPYWALSPSVCILCLKNEEMVNHIFLHCPFASRAW
TrEMBL top hitse value%identityAlignment
A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein4.0e-1346.97Show/hide
Query:  IWNFMGPKKVKFFLWTLFYKG-NTTERIQRKLPYWALSPSVCILCLKNEEMVNHIFLHCPFASRAW
        +W    PKK KFF+WTL +   NT +R+Q++LP W LSP+ C +C K++E +NH+F+HCP++ + W
Subjt:  IWNFMGPKKVKFFLWTLFYKG-NTTERIQRKLPYWALSPSVCILCLKNEEMVNHIFLHCPFASRAW
A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein5.3e-1346.97Show/hide
Query:  IWNFMGPKKVKFFLWTLFYKG-NTTERIQRKLPYWALSPSVCILCLKNEEMVNHIFLHCPFASRAW
        +W    PKK KFF+WTL +   NT +R+Q++LP W LSP+ C +C K++E +NH+F+HCP++ + W
Subjt:  IWNFMGPKKVKFFLWTLFYKG-NTTERIQRKLPYWALSPSVCILCLKNEEMVNHIFLHCPFASRAW
A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein5.3e-1346.97Show/hide
Query:  IWNFMGPKKVKFFLWTLFYKG-NTTERIQRKLPYWALSPSVCILCLKNEEMVNHIFLHCPFASRAW
        +W    PKK KFF+WTL +   NT +R+Q++LP W LSP+ C +C K++E +NH+F+HCP++ + W
Subjt:  IWNFMGPKKVKFFLWTLFYKG-NTTERIQRKLPYWALSPSVCILCLKNEEMVNHIFLHCPFASRAW
A0A5A7TSA7 LINE-1 retrotransposable element ORF2 protein1.4e-1348.48Show/hide
Query:  IWNFMGPKKVKFFLWTLFYKG-NTTERIQRKLPYWALSPSVCILCLKNEEMVNHIFLHCPFASRAW
        +W    PKK KFF+WTL +   NT +R+Q++LP WALSP+ C +C K++E +NH+F+HCP++ + W
Subjt:  IWNFMGPKKVKFFLWTLFYKG-NTTERIQRKLPYWALSPSVCILCLKNEEMVNHIFLHCPFASRAW
A0A5D3E1E3 LINE-1 retrotransposable element ORF2 protein1.4e-1348.48Show/hide
Query:  IWNFMGPKKVKFFLWTLFYKG-NTTERIQRKLPYWALSPSVCILCLKNEEMVNHIFLHCPFASRAW
        +W    PKK KFF+WTL +   NT +R+Q++LP WALSP+ C +C K++E +NH+F+HCP++ + W
Subjt:  IWNFMGPKKVKFFLWTLFYKG-NTTERIQRKLPYWALSPSVCILCLKNEEMVNHIFLHCPFASRAW
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43730.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein2.6e-0431.82Show/hide
Query:  IWNFMGPKKVKFFLWTLFYKGNTTERIQRKLPYWALS-PSVCILCLKNEEMVNHIFLHCPFASRAW
        +W      K  F  W + +    T   + +L  W LS P+VC+LC  ++E   H+F  CPF    W
Subjt:  IWNFMGPKKVKFFLWTLFYKGNTTERIQRKLPYWALS-PSVCILCLKNEEMVNHIFLHCPFASRAW
AT3G09510.1 Ribonuclease H-like superfamily protein1.8e-0535.62Show/hide
Query:  STTIASFIWNFMGPKKVKFFLWTLFYKG-NTTERIQRKLPYWALSPSVCILCLKNEEMVNHIFLHCPFASRAW
        S  + + IWN     K+K FLW    +   TTER+  +     + PS C  C +  E +NH    CPFA+ AW
Subjt:  STTIASFIWNFMGPKKVKFFLWTLFYKG-NTTERIQRKLPYWALSPSVCILCLKNEEMVNHIFLHCPFASRAW

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCTTTCCTTAAATTGAGCACGACAATAGCTTCATTTATCTGGAATTTCATGGGACCAAAAAAGGTGAAATTCTTCCTATGGACTTTGTTTTATAAAGGCAATACGACTGA
GAGGATCCAACGTAAACTTCCTTATTGGGCTCTTTCTCCTTCGGTTTGTATACTTTGCTTAAAGAATGAAGAAATGGTAAATCACATTTTTCTCCATTGTCCTTTTGCCT
CACGGGCTTGG
mRNA sequenceShow/hide mRNA sequence
CCTTTCCTTAAATTGAGCACGACAATAGCTTCATTTATCTGGAATTTCATGGGACCAAAAAAGGTGAAATTCTTCCTATGGACTTTGTTTTATAAAGGCAATACGACTGA
GAGGATCCAACGTAAACTTCCTTATTGGGCTCTTTCTCCTTCGGTTTGTATACTTTGCTTAAAGAATGAAGAAATGGTAAATCACATTTTTCTCCATTGTCCTTTTGCCT
CACGGGCTTGG
Protein sequenceShow/hide protein sequence
PFLKLSTTIASFIWNFMGPKKVKFFLWTLFYKGNTTERIQRKLPYWALSPSVCILCLKNEEMVNHIFLHCPFASRAW