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MS006665 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006665
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold677:365375..365682
RNA-Seq ExpressionMS006665
SyntenyMS006665
Gene Ontology termsGO:0008152 - metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBN69274.1 TatD related DNase [Prunus dulcis]7.4e-1747.96Show/hide
Query:  VNFWASTFGCKVEFFPFSYLSFPLVVH-RTPSFWEPVVDKMHKTIQKWRSLILLKGGRLTLAQVVLNSISIYYFSILKAPKSVTSSMEKLMRDFIWNG
        +N  A ++GC+V  +P  YL  PL  + R  +FW PV+DK+ K +Q+W+   L KGGRLTL Q VL+SI  YY S+ K P  VT+ +E+LMR+F+W G
Subjt:  VNFWASTFGCKVEFFPFSYLSFPLVVH-RTPSFWEPVVDKMHKTIQKWRSLILLKGGRLTLAQVVLNSISIYYFSILKAPKSVTSSMEKLMRDFIWNG
VVA20479.1 Hypothetical predicted protein, partial [Prunus dulcis]7.4e-1748.98Show/hide
Query:  VNFWASTFGCKVEFFPFSYLSFPLVVH-RTPSFWEPVVDKMHKTIQKWRSLILLKGGRLTLAQVVLNSISIYYFSILKAPKSVTSSMEKLMRDFIWNG
        +N  A ++GC+V  +P  YL  PL  + R  +FW PV+DK+ K +QKW+   L KGGRLTL Q VL+SI  YY S+ K P  VT  +E+LMR+F+W G
Subjt:  VNFWASTFGCKVEFFPFSYLSFPLVVH-RTPSFWEPVVDKMHKTIQKWRSLILLKGGRLTLAQVVLNSISIYYFSILKAPKSVTSSMEKLMRDFIWNG
VVA31869.1 Hypothetical predicted protein, partial [Prunus dulcis]7.4e-1747.96Show/hide
Query:  VNFWASTFGCKVEFFPFSYLSFPLVVH-RTPSFWEPVVDKMHKTIQKWRSLILLKGGRLTLAQVVLNSISIYYFSILKAPKSVTSSMEKLMRDFIWNG
        +N  A ++GC+V  +P  YL  PL  + R  +FW PV+DK+ K +Q+W+   L KGGRLTL Q VL+SI  YY S+ K P  VT+ +E+LMR+F+W G
Subjt:  VNFWASTFGCKVEFFPFSYLSFPLVVH-RTPSFWEPVVDKMHKTIQKWRSLILLKGGRLTLAQVVLNSISIYYFSILKAPKSVTSSMEKLMRDFIWNG
VVA39726.1 Hypothetical predicted protein, partial [Prunus dulcis]7.4e-1748.98Show/hide
Query:  VNFWASTFGCKVEFFPFSYLSFPLVVH-RTPSFWEPVVDKMHKTIQKWRSLILLKGGRLTLAQVVLNSISIYYFSILKAPKSVTSSMEKLMRDFIWNG
        VN  A  +GC+V  +P  YL  PL  + R   FW+PVV+K+   +QKW+   L KGGRLT+ Q VL SI IYY S+ + P  V + +EKLMRDF+W G
Subjt:  VNFWASTFGCKVEFFPFSYLSFPLVVH-RTPSFWEPVVDKMHKTIQKWRSLILLKGGRLTLAQVVLNSISIYYFSILKAPKSVTSSMEKLMRDFIWNG
XP_026444651.1 uncharacterized protein LOC113345006 [Papaver somniferum]4.3e-1741.24Show/hide
Query:  EVNFWASTFGCKVEFFPFSYLSFPLVVHRT-PSFWEPVVDKMHKTIQKWRSLILLKGGRLTLAQVVLNSISIYYFSILKAPKSVTSSMEKLMRDFIW
        +++ WA   GC  + FPF YL  PL  + T  S W+P+++K  + +  WR + L KGG+LTL + +LN++ +YYFS+ +AP SV   +E+ MR+F+W
Subjt:  EVNFWASTFGCKVEFFPFSYLSFPLVVHRT-PSFWEPVVDKMHKTIQKWRSLILLKGGRLTLAQVVLNSISIYYFSILKAPKSVTSSMEKLMRDFIW
TrEMBL top hitse value%identityAlignment
A0A803P465 Uncharacterized protein7.2e-1851.06Show/hide
Query:  ASTFGCKVEFFPFSYLSFPL-VVHRTPSFWEPVVDKMHKTIQKWRSLILLKGGRLTLAQVVLNSISIYYFSILKAPKSVTSSMEKLMRDFIWNG
        A   GC+V  +P  YL  PL    R  SFWEPV+DK  K +  W+   L KGGRLTL Q VL+S+ +Y+ S+ KAP+SVT ++EK+MRDF+W G
Subjt:  ASTFGCKVEFFPFSYLSFPL-VVHRTPSFWEPVVDKMHKTIQKWRSLILLKGGRLTLAQVVLNSISIYYFSILKAPKSVTSSMEKLMRDFIWNG
M5VS59 Reverse transcriptase domain-containing protein (Fragment)9.4e-1848.04Show/hide
Query:  STYEVNFWASTFGCKVEFFPFSYLSFPLVVH-RTPSFWEPVVDKMHKTIQKWRSLILLKGGRLTLAQVVLNSISIYYFSILKAPKSVTSSMEKLMRDFIW
        ST  +N  A ++GC+V  +P  YL  PL  + R  +FW PV+DK+ K +QKW+   L KGGRLTL Q VL+SI  YY S+ K P  V + +E+LMR+F+W
Subjt:  STYEVNFWASTFGCKVEFFPFSYLSFPLVVH-RTPSFWEPVVDKMHKTIQKWRSLILLKGGRLTLAQVVLNSISIYYFSILKAPKSVTSSMEKLMRDFIW

Query:  NG
         G
Subjt:  NG
M5WKV4 Reverse transcriptase domain-containing protein (Fragment)1.2e-1748.04Show/hide
Query:  STYEVNFWASTFGCKVEFFPFSYLSFPLVVH-RTPSFWEPVVDKMHKTIQKWRSLILLKGGRLTLAQVVLNSISIYYFSILKAPKSVTSSMEKLMRDFIW
        ST  +N  A ++GC+V  +P  YL  PL  + R  +FW PV+DK+ K +QKW+   L KGGRLTL Q VL+SI  YY S+ K P  V + +E+LMR+F+W
Subjt:  STYEVNFWASTFGCKVEFFPFSYLSFPLVVH-RTPSFWEPVVDKMHKTIQKWRSLILLKGGRLTLAQVVLNSISIYYFSILKAPKSVTSSMEKLMRDFIW

Query:  NG
         G
Subjt:  NG
M5XHS0 Reverse transcriptase domain-containing protein (Fragment)1.2e-1748.04Show/hide
Query:  STYEVNFWASTFGCKVEFFPFSYLSFPLVVH-RTPSFWEPVVDKMHKTIQKWRSLILLKGGRLTLAQVVLNSISIYYFSILKAPKSVTSSMEKLMRDFIW
        ST  +N  A ++GC+V  +P  YL  PL  + R  +FW PV+DK+ K +QKW+   L KGGRLTL Q VL+SI  YY S+ K P  V + +E+LMR+F+W
Subjt:  STYEVNFWASTFGCKVEFFPFSYLSFPLVVH-RTPSFWEPVVDKMHKTIQKWRSLILLKGGRLTLAQVVLNSISIYYFSILKAPKSVTSSMEKLMRDFIW

Query:  NG
         G
Subjt:  NG
M5XUF8 Reverse transcriptase domain-containing protein (Fragment)1.6e-1748.98Show/hide
Query:  VNFWASTFGCKVEFFPFSYLSFPLVVH-RTPSFWEPVVDKMHKTIQKWRSLILLKGGRLTLAQVVLNSISIYYFSILKAPKSVTSSMEKLMRDFIWNG
        +N  A  +GC+V  +P SYL  PL  + R   FW+PVV+K+   +QKW+   L KGGRLT+ Q VL SI IYY S+ + P  V + +EKLMRDF+W G
Subjt:  VNFWASTFGCKVEFFPFSYLSFPLVVH-RTPSFWEPVVDKMHKTIQKWRSLILLKGGRLTLAQVVLNSISIYYFSILKAPKSVTSSMEKLMRDFIWNG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein7.4e-0730.12Show/hide
Query:  PFSYLSFPLVVHR-TPSFWEPVVDKMHKTIQKWRSLILLKGGRLTLAQVVLNSISIYYFSILKAPKSVTSSMEKLMRDFIWNG
        P  YL  PL+  + T S + P+V+K+   I KW +  L   GRL L   V++S++ ++ S  + P +    ++ +   F+W+G
Subjt:  PFSYLSFPLVVHR-TPSFWEPVVDKMHKTIQKWRSLILLKGGRLTLAQVVLNSISIYYFSILKAPKSVTSSMEKLMRDFIWNG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGCAGCACTTATGAGGTAAATTTCTGGGCCTCTACTTTTGGCTGCAAGGTAGAATTTTTTCCCTTCTCTTATCTTAGCTTCCCCTTGGTGGTACATAGAACTCCTAGTTT
TTGGGAGCCCGTAGTGGACAAAATGCATAAGACAATTCAAAAGTGGAGATCCTTGATTCTTTTAAAAGGTGGGCGGTTAACGTTGGCTCAGGTAGTCTTGAATAGTATTT
CCATATATTATTTTTCAATCCTCAAAGCTCCTAAATCGGTGACCTCTTCGATGGAGAAGCTCATGAGAGATTTCATTTGGAATGGG
mRNA sequenceShow/hide mRNA sequence
TGCAGCACTTATGAGGTAAATTTCTGGGCCTCTACTTTTGGCTGCAAGGTAGAATTTTTTCCCTTCTCTTATCTTAGCTTCCCCTTGGTGGTACATAGAACTCCTAGTTT
TTGGGAGCCCGTAGTGGACAAAATGCATAAGACAATTCAAAAGTGGAGATCCTTGATTCTTTTAAAAGGTGGGCGGTTAACGTTGGCTCAGGTAGTCTTGAATAGTATTT
CCATATATTATTTTTCAATCCTCAAAGCTCCTAAATCGGTGACCTCTTCGATGGAGAAGCTCATGAGAGATTTCATTTGGAATGGG
Protein sequenceShow/hide protein sequence
CSTYEVNFWASTFGCKVEFFPFSYLSFPLVVHRTPSFWEPVVDKMHKTIQKWRSLILLKGGRLTLAQVVLNSISIYYFSILKAPKSVTSSMEKLMRDFIWNG