; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS006670 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006670
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase
Genome locationscaffold677:440087..440395
RNA-Seq ExpressionMS006670
SyntenyMS006670
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4351405.1 hypothetical protein F8388_001025, partial [Cannabis sativa]6.9e-2351.46Show/hide
Query:  DTPWIVGGAFNEILSSAEKEGGNPRPSSQIRDFQAVVDECRLMDLGFRGDFYTWIRRRHSKEPIFERLDRVLCNKVWRDLFPSGTVHHMNYNFSDHRPIE
        D PWI GG FNEILS  EK+GG  R  S I DFQ  +D+C L+D+GF G  +TW+ +R     + ERLDR  CN+ W +LFPS  V + ++  SDHRPI 
Subjt:  DTPWIVGGAFNEILSSAEKEGGNPRPSSQIRDFQAVVDECRLMDLGFRGDFYTWIRRRHSKEPIFERLDRVLCNKVWRDLFPSGTVHHMNYNFSDHRPIE

Query:  LIL
         IL
Subjt:  LIL

KAF4372682.1 hypothetical protein F8388_000849, partial [Cannabis sativa]1.2e-2250.49Show/hide
Query:  DTPWIVGGAFNEILSSAEKEGGNPRPSSQIRDFQAVVDECRLMDLGFRGDFYTWIRRRHSKEPIFERLDRVLCNKVWRDLFPSGTVHHMNYNFSDHRPIE
        D PWI GG FNE+LS  EK+GG  R  S I DFQ  +D+C L+D+GF G  +TW+ +R     + ERLDR  CN+ W +LFPS  V + ++  SDHRPI 
Subjt:  DTPWIVGGAFNEILSSAEKEGGNPRPSSQIRDFQAVVDECRLMDLGFRGDFYTWIRRRHSKEPIFERLDRVLCNKVWRDLFPSGTVHHMNYNFSDHRPIE

Query:  LIL
         IL
Subjt:  LIL

KAF5471209.1 hypothetical protein F2P56_011662 [Juglans regia]3.4e-2254.37Show/hide
Query:  DTPWIVGGAFNEILSSAEKEGGNPRPSSQIRDFQAVVDECRLMDLGFRGDFYTWIRRRHSKEPIFERLDRVLCNKVWRDLFPSGTVHHMNYNFSDHRPIE
        D PW+V G FNEIL + EK GGNPRP  Q+RDF+ VVD CRL DLG+ G  +TW  RR   + I ERLDR L N  W   FP   V H    +SDH PI 
Subjt:  DTPWIVGGAFNEILSSAEKEGGNPRPSSQIRDFQAVVDECRLMDLGFRGDFYTWIRRRHSKEPIFERLDRVLCNKVWRDLFPSGTVHHMNYNFSDHRPIE

Query:  LIL
        L L
Subjt:  LIL

XP_012851712.1 PREDICTED: uncharacterized protein LOC105971405 [Erythranthe guttata]9.1e-2349.5Show/hide
Query:  PWIVGGAFNEILSSAEKEGGNPRPSSQIRDFQAVVDECRLMDLGFRGDFYTWIRRRHSKEPIFERLDRVLCNKVWRDLFPSGTVHHMNYNFSDHRPIELI
        PW++GG FNEILS++EK GGN R  + IR F+  +++C L DLGF G  +TW   RH+ + +  RLDR   N  W  LFP  +V+H+NY+ SDH PI+ I
Subjt:  PWIVGGAFNEILSSAEKEGGNPRPSSQIRDFQAVVDECRLMDLGFRGDFYTWIRRRHSKEPIFERLDRVLCNKVWRDLFPSGTVHHMNYNFSDHRPIELI

Query:  L
        L
Subjt:  L

XP_030498017.1 uncharacterized protein LOC115713672 [Cannabis sativa]9.1e-2349.51Show/hide
Query:  DTPWIVGGAFNEILSSAEKEGGNPRPSSQIRDFQAVVDECRLMDLGFRGDFYTWIRRRHSKEPIFERLDRVLCNKVWRDLFPSGTVHHMNYNFSDHRPIE
        D PWI GG FNEILS  E++GG  R  S I +FQ  +D C L+D+GF G  +TW+ +RH    + ERLDR  CN+ W  LFPS  V + ++  SDHRPI 
Subjt:  DTPWIVGGAFNEILSSAEKEGGNPRPSSQIRDFQAVVDECRLMDLGFRGDFYTWIRRRHSKEPIFERLDRVLCNKVWRDLFPSGTVHHMNYNFSDHRPIE

Query:  LIL
         +L
Subjt:  LIL

TrEMBL top hitse value%identityAlignment
A0A5B6UZG0 Reverse transcriptase2.8e-2249.48Show/hide
Query:  PWIVGGAFNEILSSAEKEGGNPRPSSQIRDFQAVVDECRLMDLGFRGDFYTWIRRRHSKEPIFERLDRVLCNKVWRDLFPSGTVHHMNYNFSDHRPI
        PW+V G FNE + S EK+GGNPR   ++  F+  ++EC LMD+GF G +YTW R    +  I ERLDR L N+ W +LFP G +HH+ Y+ SDH P+
Subjt:  PWIVGGAFNEILSSAEKEGGNPRPSSQIRDFQAVVDECRLMDLGFRGDFYTWIRRRHSKEPIFERLDRVLCNKVWRDLFPSGTVHHMNYNFSDHRPI

A0A5B6VKR7 Reverse transcriptase6.3e-2251.55Show/hide
Query:  PWIVGGAFNEILSSAEKEGGNPRPSSQIRDFQAVVDECRLMDLGFRGDFYTWIRRRHSKEPIFERLDRVLCNKVWRDLFPSGTVHHMNYNFSDHRPI
        PWIV G FNEIL + EK+GG PR   ++ +F+ V++EC+L DLG+ G+++TW R    K  I ERLDR + N+ WR LFP   VHH+ ++FSDH PI
Subjt:  PWIVGGAFNEILSSAEKEGGNPRPSSQIRDFQAVVDECRLMDLGFRGDFYTWIRRRHSKEPIFERLDRVLCNKVWRDLFPSGTVHHMNYNFSDHRPI

A0A7J6DZ24 CCHC-type domain-containing protein3.4e-2351.46Show/hide
Query:  DTPWIVGGAFNEILSSAEKEGGNPRPSSQIRDFQAVVDECRLMDLGFRGDFYTWIRRRHSKEPIFERLDRVLCNKVWRDLFPSGTVHHMNYNFSDHRPIE
        D PWI GG FNEILS  EK+GG  R  S I DFQ  +D+C L+D+GF G  +TW+ +R     + ERLDR  CN+ W +LFPS  V + ++  SDHRPI 
Subjt:  DTPWIVGGAFNEILSSAEKEGGNPRPSSQIRDFQAVVDECRLMDLGFRGDFYTWIRRRHSKEPIFERLDRVLCNKVWRDLFPSGTVHHMNYNFSDHRPIE

Query:  LIL
         IL
Subjt:  LIL

A0A7J6EZ57 Uncharacterized protein6.3e-2249.48Show/hide
Query:  PWIVGGAFNEILSSAEKEGGNPRPSSQIRDFQAVVDECRLMDLGFRGDFYTWIRRRHSKEPIFERLDRVLCNKVWRDLFPSGTVHHMNYNFSDHRPI
        PWI GG FNEILS  EK+GG  R  S + +FQ  +D+C L+D+G+ G  +TW+ +R     + ERLDR  CN+ W DLFPSG V   ++  SDHRP+
Subjt:  PWIVGGAFNEILSSAEKEGGNPRPSSQIRDFQAVVDECRLMDLGFRGDFYTWIRRRHSKEPIFERLDRVLCNKVWRDLFPSGTVHHMNYNFSDHRPI

A0A7J6FPV7 CCHC-type domain-containing protein5.7e-2350.49Show/hide
Query:  DTPWIVGGAFNEILSSAEKEGGNPRPSSQIRDFQAVVDECRLMDLGFRGDFYTWIRRRHSKEPIFERLDRVLCNKVWRDLFPSGTVHHMNYNFSDHRPIE
        D PWI GG FNE+LS  EK+GG  R  S I DFQ  +D+C L+D+GF G  +TW+ +R     + ERLDR  CN+ W +LFPS  V + ++  SDHRPI 
Subjt:  DTPWIVGGAFNEILSSAEKEGGNPRPSSQIRDFQAVVDECRLMDLGFRGDFYTWIRRRHSKEPIFERLDRVLCNKVWRDLFPSGTVHHMNYNFSDHRPIE

Query:  LIL
         IL
Subjt:  LIL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GATACCCCGTGGATTGTGGGAGGGGCTTTCAATGAAATTCTCAGCAGTGCCGAAAAAGAAGGTGGAAATCCGAGACCAAGCTCTCAAATTCGTGATTTCCAAGCGGTGGT
GGATGAATGTCGTCTAATGGACCTGGGATTTAGGGGAGATTTTTATACTTGGATCAGAAGGAGACACTCAAAAGAACCAATTTTCGAAAGGCTTGATAGAGTCCTTTGCA
ACAAAGTTTGGAGAGATCTTTTTCCCTCAGGTACGGTCCATCACATGAATTATAATTTTTCTGATCATAGACCGATTGAATTAATTCTT
mRNA sequenceShow/hide mRNA sequence
GATACCCCGTGGATTGTGGGAGGGGCTTTCAATGAAATTCTCAGCAGTGCCGAAAAAGAAGGTGGAAATCCGAGACCAAGCTCTCAAATTCGTGATTTCCAAGCGGTGGT
GGATGAATGTCGTCTAATGGACCTGGGATTTAGGGGAGATTTTTATACTTGGATCAGAAGGAGACACTCAAAAGAACCAATTTTCGAAAGGCTTGATAGAGTCCTTTGCA
ACAAAGTTTGGAGAGATCTTTTTCCCTCAGGTACGGTCCATCACATGAATTATAATTTTTCTGATCATAGACCGATTGAATTAATTCTT
Protein sequenceShow/hide protein sequence
DTPWIVGGAFNEILSSAEKEGGNPRPSSQIRDFQAVVDECRLMDLGFRGDFYTWIRRRHSKEPIFERLDRVLCNKVWRDLFPSGTVHHMNYNFSDHRPIELIL