; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS006671 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006671
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold677:443476..443754
RNA-Seq ExpressionMS006671
SyntenyMS006671
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_010681975.1 PREDICTED: uncharacterized protein LOC104896887 [Beta vulgaris subsp. vulgaris]9.7e-0841.94Show/hide
Query:  LAEISAAAFGLQLAREGGTSPCILEMDSLSIFQLLNPDVEDVSEVGRIAREIKVLEFLVHQASISFTKRSGNEVAHKLAKLALSEEEETVWVE
        LAE  A   GLQ+A E G S  +LEMD+ +++  L    ++ S +G I  +I  L       S SF KR GN VAH LAKL+   E   VW+E
Subjt:  LAEISAAAFGLQLAREGGTSPCILEMDSLSIFQLLNPDVEDVSEVGRIAREIKVLEFLVHQASISFTKRSGNEVAHKLAKLALSEEEETVWVE

XP_010684444.1 PREDICTED: uncharacterized protein LOC104899004 [Beta vulgaris subsp. vulgaris]1.5e-0843.18Show/hide
Query:  AAAFGLQLAREGGTSPCILEMDSLSIFQLLNPDVEDVSEVGRIAREIKVLEFLVHQASISFTKRSGNEVAHKLAKLALSEEEETVWVE
        AA  G+++A E G +  ++E DS+S+F+ L    +  S  G I ++I  L    +Q S SF KR+GNEVAH LAK +L  EE+ VW+E
Subjt:  AAAFGLQLAREGGTSPCILEMDSLSIFQLLNPDVEDVSEVGRIAREIKVLEFLVHQASISFTKRSGNEVAHKLAKLALSEEEETVWVE

XP_010695719.1 PREDICTED: uncharacterized protein LOC104908324 [Beta vulgaris subsp. vulgaris]4.4e-0840.86Show/hide
Query:  LAEISAAAFGLQLAREGGTSPCILEMDSLSIFQLLNPDVEDVSEVGRIAREIKVLEFLVHQASISFTKRSGNEVAHKLAKLALSEEEETVWVE
        +AE  A   GL++A E G +  +LEMD+L ++  L    ++ + +G I  +I+VL    H  S SF KR GN VAH LAKL+ + E   VW+E
Subjt:  LAEISAAAFGLQLAREGGTSPCILEMDSLSIFQLLNPDVEDVSEVGRIAREIKVLEFLVHQASISFTKRSGNEVAHKLAKLALSEEEETVWVE

XP_022139684.1 uncharacterized protein LOC111010533 [Momordica charantia]2.6e-0846.07Show/hide
Query:  AEISAAAFGLQLAREGGTSPCILEMDSLSIFQLLNPDVEDVSEVGRIAREIKVLEFLVHQASISFTKRSGNEVAHKLAKLALSEEEETV
        AE  AA  GL++A E G SP +LE DSL I+ L   D E +S+ G I   +K       Q S SFTKR+GN +AH LA+ AL  +E  V
Subjt:  AEISAAAFGLQLAREGGTSPCILEMDSLSIFQLLNPDVEDVSEVGRIAREIKVLEFLVHQASISFTKRSGNEVAHKLAKLALSEEEETV

XP_022140628.1 uncharacterized protein LOC111011237 [Momordica charantia]1.1e-0844.09Show/hide
Query:  LAEISAAAFGLQLAREGGTSPCILEMDSLSIFQLLNPDVEDVSEVGRIAREIKVLEFLVHQASISFTKRSGNEVAHKLAKLALSEEEETVWVE
        +AE   A  GLQLA + G +P ILE DS  IF L +   ED+SE G I  + K        AS +F KR GN+ AH LA+ AL   E ++W+E
Subjt:  LAEISAAAFGLQLAREGGTSPCILEMDSLSIFQLLNPDVEDVSEVGRIAREIKVLEFLVHQASISFTKRSGNEVAHKLAKLALSEEEETVWVE

TrEMBL top hitse value%identityAlignment
A0A1R3JW24 Reverse transcriptase1.2e-0639.78Show/hide
Query:  LAEISAAAFGLQLAREGGTSPCILEMDSLSIFQLLNPDVEDVSEVGRIAREIKVLEFLVHQASISFTKRSGNEVAHKLAKLALSEEEETVWVE
        +AE  AA   L  ARE G    ILE D+L+I + +N    D S +G    E + L+ L    S+    +SGN VAH LA+  LS  E+ VW+E
Subjt:  LAEISAAAFGLQLAREGGTSPCILEMDSLSIFQLLNPDVEDVSEVGRIAREIKVLEFLVHQASISFTKRSGNEVAHKLAKLALSEEEETVWVE

A0A2H5Q3T1 RING-type domain-containing protein6.8e-0739.13Show/hide
Query:  AEISAAAFGLQLAREGGTSPCILEMDSLSIFQLLNPDVEDVSEVGRIAREIKVLEFLVHQASISFTKRSGNEVAHKLAKLALSEEEETVWVE
        AE      GL+LA + G  P I+E+DSL++  L+   +    E+  +  EIK   F+ H+A I    RS   VAH LA+LA S  +ET+W+E
Subjt:  AEISAAAFGLQLAREGGTSPCILEMDSLSIFQLLNPDVEDVSEVGRIAREIKVLEFLVHQASISFTKRSGNEVAHKLAKLALSEEEETVWVE

A0A6J1C467 uncharacterized protein LOC1110077751.0e-0742.55Show/hide
Query:  LAEISAAAFGLQLAREGGTSPCILEMDSLSIFQLLNPDVEDVSEVGRIAREIKVLEFLVH-QASISFTKRSGNEVAHKLAKLALSEEEETVWVE
        LAE  AA  G+ LA E G  P  +E DS  +F LL  D ED SE+G +A  I+ +   +H     SF  R GN  AH LA++ +  E   VWVE
Subjt:  LAEISAAAFGLQLAREGGTSPCILEMDSLSIFQLLNPDVEDVSEVGRIAREIKVLEFLVH-QASISFTKRSGNEVAHKLAKLALSEEEETVWVE

A0A6J1CDQ4 uncharacterized protein LOC1110105331.2e-0846.07Show/hide
Query:  AEISAAAFGLQLAREGGTSPCILEMDSLSIFQLLNPDVEDVSEVGRIAREIKVLEFLVHQASISFTKRSGNEVAHKLAKLALSEEEETV
        AE  AA  GL++A E G SP +LE DSL I+ L   D E +S+ G I   +K       Q S SFTKR+GN +AH LA+ AL  +E  V
Subjt:  AEISAAAFGLQLAREGGTSPCILEMDSLSIFQLLNPDVEDVSEVGRIAREIKVLEFLVHQASISFTKRSGNEVAHKLAKLALSEEEETV

A0A6J1CIF1 uncharacterized protein LOC1110112375.6e-0944.09Show/hide
Query:  LAEISAAAFGLQLAREGGTSPCILEMDSLSIFQLLNPDVEDVSEVGRIAREIKVLEFLVHQASISFTKRSGNEVAHKLAKLALSEEEETVWVE
        +AE   A  GLQLA + G +P ILE DS  IF L +   ED+SE G I  + K        AS +F KR GN+ AH LA+ AL   E ++W+E
Subjt:  LAEISAAAFGLQLAREGGTSPCILEMDSLSIFQLLNPDVEDVSEVGRIAREIKVLEFLVHQASISFTKRSGNEVAHKLAKLALSEEEETVWVE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTAGCTGAAATCTCAGCAGCAGCGTTTGGGTTACAGCTCGCCCGTGAGGGAGGTACTTCGCCGTGCATACTTGAGATGGACTCGCTCAGTATTTTCCAGCTTTTGAACCC
GGATGTGGAGGATGTTTCTGAGGTTGGCCGTATTGCTAGGGAGATTAAAGTTTTGGAATTTTTAGTTCATCAGGCTTCTATCAGTTTCACCAAGAGAAGTGGTAACGAAG
TGGCTCATAAGCTTGCTAAGTTGGCTTTATCTGAAGAGGAAGAGACAGTTTGGGTTGAG
mRNA sequenceShow/hide mRNA sequence
CTAGCTGAAATCTCAGCAGCAGCGTTTGGGTTACAGCTCGCCCGTGAGGGAGGTACTTCGCCGTGCATACTTGAGATGGACTCGCTCAGTATTTTCCAGCTTTTGAACCC
GGATGTGGAGGATGTTTCTGAGGTTGGCCGTATTGCTAGGGAGATTAAAGTTTTGGAATTTTTAGTTCATCAGGCTTCTATCAGTTTCACCAAGAGAAGTGGTAACGAAG
TGGCTCATAAGCTTGCTAAGTTGGCTTTATCTGAAGAGGAAGAGACAGTTTGGGTTGAG
Protein sequenceShow/hide protein sequence
LAEISAAAFGLQLAREGGTSPCILEMDSLSIFQLLNPDVEDVSEVGRIAREIKVLEFLVHQASISFTKRSGNEVAHKLAKLALSEEEETVWVE