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MS006736 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006736
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRibosomal protein S12
Genome locationscaffold379:74114..74350
RNA-Seq ExpressionMS006736
SyntenyMS006736
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR006032 - Ribosomal protein S12/S23
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
QKI32043.1 ribosomal protein S12 [Ombrophytum subterraneum]3.4e-3084.81Show/hide
Query:  SAPRKIVKVRLNNRHDIFAHISGENHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLMGILDRRRGRSKYGAQKPKLI
        SAPRKI KVRL+NRHDIFAHI GE HNLQEHSIVLIRG RVKDSPGVKSHC  GVKDL+GI DRR+GRSKYGA+KPK I
Subjt:  SAPRKIVKVRLNNRHDIFAHISGENHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLMGILDRRRGRSKYGAQKPKLI

QVJ97865.1 ribosomal protein S12 [Apium graveolens]3.4e-3084.81Show/hide
Query:  SAPRKIVKVRLNNRHDIFAHISGENHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLMGILDRRRGRSKYGAQKPKLI
        SAPRKI KVRL+NRHDIFAHI GE HNLQEHS+VLIRG RVKDSPGVKSHC  GVKDL+GI DRRRGRSKYGA+KPK I
Subjt:  SAPRKIVKVRLNNRHDIFAHISGENHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLMGILDRRRGRSKYGAQKPKLI

YP_004849331.1 ribosomal protein S12 [Cucumis sativus]3.4e-3084.81Show/hide
Query:  SAPRKIVKVRLNNRHDIFAHISGENHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLMGILDRRRGRSKYGAQKPKLI
        SAPRKI KVRL+NRHDIFAHI GE HNLQEHS+VLIRG RVKDSPGVKSHC  GVKDL+GI DRRRGRSKYGA+KPK I
Subjt:  SAPRKIVKVRLNNRHDIFAHISGENHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLMGILDRRRGRSKYGAQKPKLI

YP_009709935.1 ribosomal protein S12 [Manihot esculenta]3.4e-3084.81Show/hide
Query:  SAPRKIVKVRLNNRHDIFAHISGENHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLMGILDRRRGRSKYGAQKPKLI
        SAPRKI KVRL+NRHDIFAHI GE HNLQEHS+VLIRG RVKDSPGVKSHC  GVKDL+GI DRRRGRSKYGA+KPK I
Subjt:  SAPRKIVKVRLNNRHDIFAHISGENHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLMGILDRRRGRSKYGAQKPKLI

YP_009940638.1 ribosomal protein S12 [Passiflora edulis]3.4e-3084.81Show/hide
Query:  SAPRKIVKVRLNNRHDIFAHISGENHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLMGILDRRRGRSKYGAQKPKLI
        SAPRKI KVRL+NRHDIFAHI GE HNLQEHS+VLIRG RVKDSPGVKSHC  GVKDL+GI DRRRGRSKYGA+KPK I
Subjt:  SAPRKIVKVRLNNRHDIFAHISGENHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLMGILDRRRGRSKYGAQKPKLI

TrEMBL top hitse value%identityAlignment
A0A7D6BYE6 Ribosomal protein S121.7e-3084.81Show/hide
Query:  SAPRKIVKVRLNNRHDIFAHISGENHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLMGILDRRRGRSKYGAQKPKLI
        SAPRKI KVRL+NRHDIFAHI GE HNLQEHS+VLIRG RVKDSPGVKSHC  GVKDL+GI DRRRGRSKYGA+KPK I
Subjt:  SAPRKIVKVRLNNRHDIFAHISGENHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLMGILDRRRGRSKYGAQKPKLI

A0A7G8P5I5 Ribosomal protein S121.7e-3084.81Show/hide
Query:  SAPRKIVKVRLNNRHDIFAHISGENHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLMGILDRRRGRSKYGAQKPKLI
        SAPRKI KVRL+NRHDIFAHI GE HNLQEHS+VLIRG RVKDSPGVKSHC  GVKDL+GI DRRRGRSKYGA+KPK I
Subjt:  SAPRKIVKVRLNNRHDIFAHISGENHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLMGILDRRRGRSKYGAQKPKLI

G3EIY3 Ribosomal protein S121.7e-3084.81Show/hide
Query:  SAPRKIVKVRLNNRHDIFAHISGENHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLMGILDRRRGRSKYGAQKPKLI
        SAPRKI KVRL+NRHDIFAHI GE HNLQEHS+VLIRG RVKDSPGVKSHC  GVKDL+GI DRRRGRSKYGA+KPK I
Subjt:  SAPRKIVKVRLNNRHDIFAHISGENHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLMGILDRRRGRSKYGAQKPKLI

G3EU39 Ribosomal protein S121.7e-3084.81Show/hide
Query:  SAPRKIVKVRLNNRHDIFAHISGENHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLMGILDRRRGRSKYGAQKPKLI
        SAPRKI KVRL+NRHDIFAHI GE HNLQEHS+VLIRG RVKDSPGVKSHC  GVKDL+GI DRRRGRSKYGA+KPK I
Subjt:  SAPRKIVKVRLNNRHDIFAHISGENHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLMGILDRRRGRSKYGAQKPKLI

W6JLR7 Ribosomal protein S121.7e-3084.81Show/hide
Query:  SAPRKIVKVRLNNRHDIFAHISGENHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLMGILDRRRGRSKYGAQKPKLI
        SAPRKI KVRL+NRHDIFAHI GE HNLQEHS+VLIRG RVKDSPGVKSHC  GVKDL+GI DRRRGRSKYGA+KPK I
Subjt:  SAPRKIVKVRLNNRHDIFAHISGENHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLMGILDRRRGRSKYGAQKPKLI

SwissProt top hitse value%identityAlignment
P27070 Ribosomal protein S12, mitochondrial1.9e-3182.28Show/hide
Query:  SAPRKIVKVRLNNRHDIFAHISGENHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLMGILDRRRGRSKYGAQKPKLI
        SAPRKI KVRL NRHDIF HI GE HN QEHS+VLIRG RVKDSPGVKSHC  GVKDL+GI DRRRGRSKYGA+KPK I
Subjt:  SAPRKIVKVRLNNRHDIFAHISGENHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLMGILDRRRGRSKYGAQKPKLI

P50892 Ribosomal protein S12, mitochondrial9.4e-3182.28Show/hide
Query:  SAPRKIVKVRLNNRHDIFAHISGENHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLMGILDRRRGRSKYGAQKPKLI
        SAPRKI KVRL+NRHDIFAHI GE HN QEHS VLIRG RVKDSPGVKSHC  GVKDLMGI  RR GRSKYGA+KPK I
Subjt:  SAPRKIVKVRLNNRHDIFAHISGENHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLMGILDRRRGRSKYGAQKPKLI

P68535 Ribosomal protein S12, mitochondrial4.5e-3384.81Show/hide
Query:  SAPRKIVKVRLNNRHDIFAHISGENHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLMGILDRRRGRSKYGAQKPKLI
        SAPRKI KVRL+NRHDIFAHI GE HNLQEHS+VLIRG RVKDSPGVKSHC  GVKDL+GI DRRRGRSKYGA+KPK I
Subjt:  SAPRKIVKVRLNNRHDIFAHISGENHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLMGILDRRRGRSKYGAQKPKLI

P68536 Ribosomal protein S12, mitochondrial4.5e-3384.81Show/hide
Query:  SAPRKIVKVRLNNRHDIFAHISGENHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLMGILDRRRGRSKYGAQKPKLI
        SAPRKI KVRL+NRHDIFAHI GE HNLQEHS+VLIRG RVKDSPGVKSHC  GVKDL+GI DRRRGRSKYGA+KPK I
Subjt:  SAPRKIVKVRLNNRHDIFAHISGENHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLMGILDRRRGRSKYGAQKPKLI

Q95869 Ribosomal protein S12, mitochondrial1.1e-3182.28Show/hide
Query:  SAPRKIVKVRLNNRHDIFAHISGENHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLMGILDRRRGRSKYGAQKPKLI
        SAPRKI KVRL+NRHDIFAHI GE HN QEHS+VLIRG RVKDSPGVK HC  GVKDL+GI DRRRGRSKYGA+KPK I
Subjt:  SAPRKIVKVRLNNRHDIFAHISGENHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLMGILDRRRGRSKYGAQKPKLI

Arabidopsis top hitse value%identityAlignment
AT2G07675.1 Ribosomal protein S12/S23 family protein7.9e-3383.54Show/hide
Query:  SAPRKIVKVRLNNRHDIFAHISGENHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLMGILDRRRGRSKYGAQKPKLI
        SAPRKI KVRL+NRHDIFAHI GE HN QEHS VLIRG RVKDSPGVKSHC  GVKDLMGI  RRRGRSKYGA+KPK I
Subjt:  SAPRKIVKVRLNNRHDIFAHISGENHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLMGILDRRRGRSKYGAQKPKLI

ATCG00065.1 ribosomal protein S12A2.6e-2057.14Show/hide
Query:  SAPRKIVKVRLNNRHDIFAHISGENHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLMGILDRRRGRSKYGAQKPK
        SA RK+ +VRL +  +I A+I G  HNLQEHS+VL+RG RVKD PGV+ H   G  D +G+ DR++GRSKYG +KPK
Subjt:  SAPRKIVKVRLNNRHDIFAHISGENHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLMGILDRRRGRSKYGAQKPK

ATCG00905.1 ribosomal protein S12C2.6e-2057.14Show/hide
Query:  SAPRKIVKVRLNNRHDIFAHISGENHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLMGILDRRRGRSKYGAQKPK
        SA RK+ +VRL +  +I A+I G  HNLQEHS+VL+RG RVKD PGV+ H   G  D +G+ DR++GRSKYG +KPK
Subjt:  SAPRKIVKVRLNNRHDIFAHISGENHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLMGILDRRRGRSKYGAQKPK

ATCG01230.1 ribosomal protein S12B2.6e-2057.14Show/hide
Query:  SAPRKIVKVRLNNRHDIFAHISGENHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLMGILDRRRGRSKYGAQKPK
        SA RK+ +VRL +  +I A+I G  HNLQEHS+VL+RG RVKD PGV+ H   G  D +G+ DR++GRSKYG +KPK
Subjt:  SAPRKIVKVRLNNRHDIFAHISGENHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLMGILDRRRGRSKYGAQKPK

ATMG00980.1 Ribosomal protein S12/S23 family protein7.9e-3383.54Show/hide
Query:  SAPRKIVKVRLNNRHDIFAHISGENHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLMGILDRRRGRSKYGAQKPKLI
        SAPRKI KVRL+NRHDIFAHI GE HN QEHS VLIRG RVKDSPGVKSHC  GVKDLMGI  RRRGRSKYGA+KPK I
Subjt:  SAPRKIVKVRLNNRHDIFAHISGENHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLMGILDRRRGRSKYGAQKPKLI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGCGCTCCACGTAAGATAGTCAAAGTACGGTTGAACAATCGTCATGATATATTTGCTCACATTTCGGGCGAAAATCATAATTTGCAGGAACATTCTATAGTGTTAATAAG
AGGAAGTAGAGTGAAAGATTCGCCGGGCGTGAAATCTCATTGTTTTTTAGGAGTCAAAGATTTGATGGGAATTCTAGATCGAAGAAGAGGCAGATCTAAATATGGTGCAC
AAAAACCAAAATTGATA
mRNA sequenceShow/hide mRNA sequence
AGCGCTCCACGTAAGATAGTCAAAGTACGGTTGAACAATCGTCATGATATATTTGCTCACATTTCGGGCGAAAATCATAATTTGCAGGAACATTCTATAGTGTTAATAAG
AGGAAGTAGAGTGAAAGATTCGCCGGGCGTGAAATCTCATTGTTTTTTAGGAGTCAAAGATTTGATGGGAATTCTAGATCGAAGAAGAGGCAGATCTAAATATGGTGCAC
AAAAACCAAAATTGATA
Protein sequenceShow/hide protein sequence
SAPRKIVKVRLNNRHDIFAHISGENHNLQEHSIVLIRGSRVKDSPGVKSHCFLGVKDLMGILDRRRGRSKYGAQKPKLI