CuGenDBv2

Gene ID	MS006744
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Leucine-rich repeat family protein / extensin family protein
Genome location	scaffold379:279119..279442
RNA-Seq Expression	MS006744
Synteny	MS006744
Gene Ontology terms	GO:0005515 - protein binding (molecular function) GO:0016491 - oxidoreductase activity (molecular function)
InterPro domains	IPR001611 - Leucine-rich repeat IPR032675 - Leucine-rich repeat domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7984157.1 hypothetical protein I3843_04G144200 [Carya illinoinensis]

2.1e-27

63.89

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Query:  LPSLQELDLSNNYFSGRF--LTLLFTKLIYLDLRYNSFSGPIPKGSF-KNLDPILIKNNQFNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLK
        L SLQELDLSNN FSG F  +TL    LIYLDLR+N+FSGP+P+  F KNLD I + NNQF G++PQN  +SP S++NLANN+F+  IPTS GFM  +LK
Subjt:  LPSLQELDLSNNYFSGRF--LTLLFTKLIYLDLRYNSFSGPIPKGSF-KNLDPILIKNNQFNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLK

Query:  EILFLNYQ
        EILFLN Q
Subjt:  EILFLNYQ

XP_021597937.1 leucine-rich repeat extensin-like protein 4 [Manihot esculenta]

5.6e-28

65.74

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Query:  LPSLQELDLSNNYFSGRF--LTLLFTKLIYLDLRYNSFSGPIPKGSF-KNLDPILIKNNQFNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLK
        L SLQELDLSNN FSGRF  +TL    LIYLDLR+NSFSGPIP+  F K LD I + NNQF+ +IPQN  +SP S++NLANN+FT +IP SFG M  +LK
Subjt:  LPSLQELDLSNNYFSGRF--LTLLFTKLIYLDLRYNSFSGPIPKGSF-KNLDPILIKNNQFNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLK

Query:  EILFLNYQ
        EILFLN Q
Subjt:  EILFLNYQ

XP_021606597.1 leucine-rich repeat extensin-like protein 4 [Manihot esculenta]

1.6e-27

65.74

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Query:  LPSLQELDLSNNYFSGRF--LTLLFTKLIYLDLRYNSFSGPIPKGSF-KNLDPILIKNNQFNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLK
        L SLQELDLSNN FSG F  +TL    LIYLDLR+NSFSGPIP+  F K LD I + NNQF+G+IPQN  +SP S++NLANN+ T  IP SFG M  RLK
Subjt:  LPSLQELDLSNNYFSGRF--LTLLFTKLIYLDLRYNSFSGPIPKGSF-KNLDPILIKNNQFNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLK

Query:  EILFLNYQ
        EILFLN Q
Subjt:  EILFLNYQ

XP_022154688.1 leucine-rich repeat extensin-like protein 4 [Momordica charantia]

3.2e-31

72.22

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Query:  LPSLQELDLSNNYFSGRF--LTLLFTKLIYLDLRYNSFSGPIPKG-SFKNLDPILIKNNQFNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLK
        LPSLQELDLSNN FSG F  +TL   +LIYLDLR+NSFSGPIP+   F+ LD ILI NNQF+GEIPQN  +SP S++NLANNRFT AIP SFGFM  RLK
Subjt:  LPSLQELDLSNNYFSGRF--LTLLFTKLIYLDLRYNSFSGPIPKG-SFKNLDPILIKNNQFNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLK

Query:  EILFLNYQ
        EILFLN Q
Subjt:  EILFLNYQ

XP_037493000.1 leucine-rich repeat extensin-like protein 4 [Jatropha curcas]

7.3e-28

64.81

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Query:  LPSLQELDLSNNYFSGRF--LTLLFTKLIYLDLRYNSFSGPIPKGSFK-NLDPILIKNNQFNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLK
        L SLQELDLSNN FSGRF  +TL    LIYLDLR+NSFSGPIP   F   LD I + NNQFNG+IPQN  +SP S++NLANN+F+ ++P SFG M  +LK
Subjt:  LPSLQELDLSNNYFSGRF--LTLLFTKLIYLDLRYNSFSGPIPKGSFK-NLDPILIKNNQFNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLK

Query:  EILFLNYQ
        EILFLN Q
Subjt:  EILFLNYQ

TrEMBL top hits

e value

%identity

Alignment

A0A2C9UAT0 LRRNT_2 domain-containing protein

2.7e-28

65.74

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Query:  LPSLQELDLSNNYFSGRF--LTLLFTKLIYLDLRYNSFSGPIPKGSF-KNLDPILIKNNQFNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLK
        L SLQELDLSNN FSGRF  +TL    LIYLDLR+NSFSGPIP+  F K LD I + NNQF+ +IPQN  +SP S++NLANN+FT +IP SFG M  +LK
Subjt:  LPSLQELDLSNNYFSGRF--LTLLFTKLIYLDLRYNSFSGPIPKGSF-KNLDPILIKNNQFNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLK

Query:  EILFLNYQ
        EILFLN Q
Subjt:  EILFLNYQ

A0A2C9W430 LRRNT_2 domain-containing protein

7.9e-28

65.74

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Query:  LPSLQELDLSNNYFSGRF--LTLLFTKLIYLDLRYNSFSGPIPKGSF-KNLDPILIKNNQFNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLK
        L SLQELDLSNN FSG F  +TL    LIYLDLR+NSFSGPIP+  F K LD I + NNQF+G+IPQN  +SP S++NLANN+ T  IP SFG M  RLK
Subjt:  LPSLQELDLSNNYFSGRF--LTLLFTKLIYLDLRYNSFSGPIPKGSF-KNLDPILIKNNQFNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLK

Query:  EILFLNYQ
        EILFLN Q
Subjt:  EILFLNYQ

A0A2N9HSU9 LRRNT_2 domain-containing protein

1.3e-27

63.89

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Query:  LPSLQELDLSNNYFSGRF--LTLLFTKLIYLDLRYNSFSGPIPKGSF-KNLDPILIKNNQFNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLK
        L SLQELDLSNN FSG F  +TL    LIYLDLR+N FSGP+P+  F K LD I + NNQF G++PQN  +SP S++NLANN+F+  IPTSFGFM  +LK
Subjt:  LPSLQELDLSNNYFSGRF--LTLLFTKLIYLDLRYNSFSGPIPKGSF-KNLDPILIKNNQFNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLK

Query:  EILFLNYQ
        EILFLN Q
Subjt:  EILFLNYQ

A0A6A6K8L1 LRRNT_2 domain-containing protein

1.0e-27

64.81

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Query:  LPSLQELDLSNNYFSGRF--LTLLFTKLIYLDLRYNSFSGPIPKGSF-KNLDPILIKNNQFNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLK
        L SLQELDLSNN+FSG F  +TL    LIYLDLR+NSFSG IP+  F K LD I + NNQF+G+IPQN  +SP S++NLANN+FT +IP SFG M  +LK
Subjt:  LPSLQELDLSNNYFSGRF--LTLLFTKLIYLDLRYNSFSGPIPKGSF-KNLDPILIKNNQFNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLK

Query:  EILFLNYQ
        EILFLN Q
Subjt:  EILFLNYQ

A0A6J1DKZ9 leucine-rich repeat extensin-like protein 4

1.5e-31

72.22

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Query:  LPSLQELDLSNNYFSGRF--LTLLFTKLIYLDLRYNSFSGPIPKG-SFKNLDPILIKNNQFNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLK
        LPSLQELDLSNN FSG F  +TL   +LIYLDLR+NSFSGPIP+   F+ LD ILI NNQF+GEIPQN  +SP S++NLANNRFT AIP SFGFM  RLK
Subjt:  LPSLQELDLSNNYFSGRF--LTLLFTKLIYLDLRYNSFSGPIPKG-SFKNLDPILIKNNQFNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLK

Query:  EILFLNYQ
        EILFLN Q
Subjt:  EILFLNYQ

SwissProt top hits

e value

%identity

Alignment

Q4PSE6 Leucine-rich repeat extensin-like protein 7

1.9e-18

49.06

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Query:  LPSLQELDLSNNYFSGRF--LTLLFTKLIYLDLRYNSFSGPIPKGSF-KNLDPILIKNNQFNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLK
        L  L ELDLSNN F+G+F  + +   KL YLDLRYN F G +P+  F K+LD + + +N+F  +IP N  +SPVS+L LA+NRF   IP SFG M   L 
Subjt:  LPSLQELDLSNNYFSGRF--LTLLFTKLIYLDLRYNSFSGPIPKGSF-KNLDPILIKNNQFNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLK

Query:  EILFLN
        EI+ ++
Subjt:  EILFLN

Q9LHF1 Leucine-rich repeat extensin-like protein 4

8.4e-19

51.89

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Query:  LPSLQELDLSNNYFSGRFLTLL--FTKLIYLDLRYNSFSGPIPKGSF-KNLDPILIKNNQFNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLK
        L  L ELDLSNN F+G+F T++     L +LDLR+N F G +PK  F KNLD I I +N+F  E+P+NF  SPVS++ LANN F   IPTS   M   L 
Subjt:  LPSLQELDLSNNYFSGRFLTLL--FTKLIYLDLRYNSFSGPIPKGSF-KNLDPILIKNNQFNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLK

Query:  EILFLN
        EI+F+N
Subjt:  EILFLN

Q9LUI1 Leucine-rich repeat extensin-like protein 6

6.2e-14

43.4

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Query:  LQELDLSNNYFSGRFLTLLFT--KLIYLDLRYNSFSGPIPKGSFK-NLDPILIKNNQFNGEIPQNFRSSPVSMLNLANNRFT-CAIPTSFGFMYLRLKEI
        L ELD+SNN  SG F +++F+   L +LD+R+N F G +P   F  NLD + I +N+F   +P+N  +SPVS+L LANN      +P SF  M   L EI
Subjt:  LQELDLSNNYFSGRFLTLLFT--KLIYLDLRYNSFSGPIPKGSFK-NLDPILIKNNQFNGEIPQNFRSSPVSMLNLANNRFT-CAIPTSFGFMYLRLKEI

Query:  LFLNYQ
        +  N Q
Subjt:  LFLNYQ

Q9SN46 Leucine-rich repeat extensin-like protein 5

2.1e-17

50.48

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Query:  LPSLQELDLSNNYFSGRFLT--LLFTKLIYLDLRYNSFSGPIPKGSF-KNLDPILIKNNQFNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLK
        L  L ELDLSNN F+G F T  L    L +LDLR+N F GP+P+  F K+LD I I +N+F  E+P N   SPVS++ +ANN F   IPTS G M   L+
Subjt:  LPSLQELDLSNNYFSGRFLT--LLFTKLIYLDLRYNSFSGPIPKGSF-KNLDPILIKNNQFNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLK

Query:  EILFL
        EI+F+
Subjt:  EILFL

Q9T0K5 Leucine-rich repeat extensin-like protein 3

3.2e-18

50.94

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Query:  LPSLQELDLSNNYFSGRFLT--LLFTKLIYLDLRYNSFSGPIPKGSF-KNLDPILIKNNQFNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLK
        L  L ELDLSNN F+G+F T  L    L +LDLR+N F G +PK  F K+LD I I +N+F  E+P+NF  SPVS++ LANNRF   +P+S   M   L 
Subjt:  LPSLQELDLSNNYFSGRFLT--LLFTKLIYLDLRYNSFSGPIPKGSF-KNLDPILIKNNQFNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLK

Query:  EILFLN
        EI+F+N
Subjt:  EILFLN

Arabidopsis top hits

e value

%identity

Alignment

AT2G19780.1 Leucine-rich repeat (LRR) family protein

3.0e-27

59.26

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Query:  LPSLQELDLSNNYFSGRF--LTLLFTKLIYLDLRYNSFSGPIPKGSF-KNLDPILIKNNQFNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLK
        L SLQELDLSNN FSG F  +TL    L+YLDLR+N+F+G IP+  F K LD IL+ NNQF GEIP N   S  S++NLANN+ +  IPTSFG    +LK
Subjt:  LPSLQELDLSNNYFSGRF--LTLLFTKLIYLDLRYNSFSGPIPKGSF-KNLDPILIKNNQFNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLK

Query:  EILFLNYQ
        E+LFLN Q
Subjt:  EILFLNYQ

AT3G24480.1 Leucine-rich repeat (LRR) family protein

6.0e-20

51.89

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Query:  LPSLQELDLSNNYFSGRFLTLL--FTKLIYLDLRYNSFSGPIPKGSF-KNLDPILIKNNQFNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLK
        L  L ELDLSNN F+G+F T++     L +LDLR+N F G +PK  F KNLD I I +N+F  E+P+NF  SPVS++ LANN F   IPTS   M   L 
Subjt:  LPSLQELDLSNNYFSGRFLTLL--FTKLIYLDLRYNSFSGPIPKGSF-KNLDPILIKNNQFNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLK

Query:  EILFLN
        EI+F+N
Subjt:  EILFLN

AT4G13340.1 Leucine-rich repeat (LRR) family protein

2.3e-19

50.94

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Query:  LPSLQELDLSNNYFSGRFLT--LLFTKLIYLDLRYNSFSGPIPKGSF-KNLDPILIKNNQFNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLK
        L  L ELDLSNN F+G+F T  L    L +LDLR+N F G +PK  F K+LD I I +N+F  E+P+NF  SPVS++ LANNRF   +P+S   M   L 
Subjt:  LPSLQELDLSNNYFSGRFLT--LLFTKLIYLDLRYNSFSGPIPKGSF-KNLDPILIKNNQFNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLK

Query:  EILFLN
        EI+F+N
Subjt:  EILFLN

AT4G29240.1 Leucine-rich repeat (LRR) family protein

3.9e-27

60.19

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Query:  LPSLQELDLSNNYFSGRF--LTLLFTKLIYLDLRYNSFSGPIPKGSF-KNLDPILIKNNQFNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLK
        L SLQELDLSNN  SG F  +TL    L+YLDLR+NS +G IP+  F K LD IL+ NNQF GEIP+N  +SP S++NLANNRF+  IPTSFG    R+K
Subjt:  LPSLQELDLSNNYFSGRF--LTLLFTKLIYLDLRYNSFSGPIPKGSF-KNLDPILIKNNQFNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLK

Query:  EILFLNYQ
        E+L LN Q
Subjt:  EILFLNYQ

AT5G25550.1 Leucine-rich repeat (LRR) family protein

1.3e-19

49.06

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Query:  LPSLQELDLSNNYFSGRF--LTLLFTKLIYLDLRYNSFSGPIPKGSF-KNLDPILIKNNQFNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLK
        L  L ELDLSNN F+G+F  + +   KL YLDLRYN F G +P+  F K+LD + + +N+F  +IP N  +SPVS+L LA+NRF   IP SFG M   L 
Subjt:  LPSLQELDLSNNYFSGRF--LTLLFTKLIYLDLRYNSFSGPIPKGSF-KNLDPILIKNNQFNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLK

Query:  EILFLN
        EI+ ++
Subjt:  EILFLN

Sequences

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CDS sequence

Show/hide CDS sequence

CTCCCCTCCCTCCAAGAACTCGATCTCAGCAACAACTATTTCTCCGGCCGTTTCCTTACGTTACTCTTTACAAAGCTCATCTATTTGGACCTCAGATACAATTCCTTCTC
TGGGCCAATCCCAAAAGGTTCGTTCAAGAATTTGGACCCCATTCTCATCAAGAATAACCAATTCAACGGCGAAATCCCACAAAACTTCAGGAGTTCACCGGTTTCCATGT
TAAATCTGGCAAATAATCGGTTCACCTGTGCGATTCCGACGAGTTTTGGGTTCATGTATCTGAGATTGAAGGAGATTCTGTTTCTGAATTACCAA

mRNA sequence

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Protein sequence

Show/hide protein sequence

LPSLQELDLSNNYFSGRFLTLLFTKLIYLDLRYNSFSGPIPKGSFKNLDPILIKNNQFNGEIPQNFRSSPVSMLNLANNRFTCAIPTSFGFMYLRLKEILFLNYQ

MS006744 (gene) of Bitter gourd (TR) v1 genome