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MS006746 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006746
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationscaffold379:321617..321830
RNA-Seq ExpressionMS006746
SyntenyMS006746
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR032867 - DYW domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057970.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]3.4e-2174.65Show/hide
Query:  LDNVIEKLKGNGYITGTEMALFAIKEEEKEHFVMYHSEKLALFVVGLLNSPLDCTSRIVKNLNIYLDCHEF
        LDN+I+KLK NGY+TGT+MAL+ +++EEKEH +MYHSEKLAL   GLLNSPLDCT RIVKNL I LDCHEF
Subjt:  LDNVIEKLKGNGYITGTEMALFAIKEEEKEHFVMYHSEKLALFVVGLLNSPLDCTSRIVKNLNIYLDCHEF

XP_004138309.2 pentatricopeptide repeat-containing protein At4g21065 [Cucumis sativus]1.2e-2177.46Show/hide
Query:  LDNVIEKLKGNGYITGTEMALFAIKEEEKEHFVMYHSEKLALFVVGLLNSPLDCTSRIVKNLNIYLDCHEF
        LDN+I+KLK NGY+TGT+MAL+ I++EEKEH VMYHSEKLAL   GLLNSPLDCT RIVKNL I LDCHEF
Subjt:  LDNVIEKLKGNGYITGTEMALFAIKEEEKEHFVMYHSEKLALFVVGLLNSPLDCTSRIVKNLNIYLDCHEF

XP_016901378.1 PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Cucumis melo]3.4e-2174.65Show/hide
Query:  LDNVIEKLKGNGYITGTEMALFAIKEEEKEHFVMYHSEKLALFVVGLLNSPLDCTSRIVKNLNIYLDCHEF
        LDN+I+KLK NGY+TGT+MAL+ +++EEKEH +MYHSEKLAL   GLLNSPLDCT RIVKNL I LDCHEF
Subjt:  LDNVIEKLKGNGYITGTEMALFAIKEEEKEHFVMYHSEKLALFVVGLLNSPLDCTSRIVKNLNIYLDCHEF

XP_022134759.1 pentatricopeptide repeat-containing protein At4g21065-like [Momordica charantia]1.4e-2283.1Show/hide
Query:  LDNVIEKLKGNGYITGTEMALFAIKEEEKEHFVMYHSEKLALFVVGLLNSPLDCTSRIVKNLNIYLDCHEF
        LDNVIEKLK NGYITGT MALF I+EEEKEH VMYHSEKLAL   GLLNSPLDC  RIVKNL I LDCHEF
Subjt:  LDNVIEKLKGNGYITGTEMALFAIKEEEKEHFVMYHSEKLALFVVGLLNSPLDCTSRIVKNLNIYLDCHEF

XP_023529316.1 pentatricopeptide repeat-containing protein At4g21065-like [Cucurbita pepo subsp. pepo]5.9e-2176.06Show/hide
Query:  LDNVIEKLKGNGYITGTEMALFAIKEEEKEHFVMYHSEKLALFVVGLLNSPLDCTSRIVKNLNIYLDCHEF
        LDNV++KLK NGY+TGT+M+LF I++EEKEH VMYHSEKLAL   GLLNSPLDCT RIVKNL I  DCHEF
Subjt:  LDNVIEKLKGNGYITGTEMALFAIKEEEKEHFVMYHSEKLALFVVGLLNSPLDCTSRIVKNLNIYLDCHEF

TrEMBL top hitse value%identityAlignment
A0A0A0LUK8 DYW_deaminase domain-containing protein5.7e-2277.46Show/hide
Query:  LDNVIEKLKGNGYITGTEMALFAIKEEEKEHFVMYHSEKLALFVVGLLNSPLDCTSRIVKNLNIYLDCHEF
        LDN+I+KLK NGY+TGT+MAL+ I++EEKEH VMYHSEKLAL   GLLNSPLDCT RIVKNL I LDCHEF
Subjt:  LDNVIEKLKGNGYITGTEMALFAIKEEEKEHFVMYHSEKLALFVVGLLNSPLDCTSRIVKNLNIYLDCHEF

A0A1S4DZH3 pentatricopeptide repeat-containing protein At4g21065-like1.7e-2174.65Show/hide
Query:  LDNVIEKLKGNGYITGTEMALFAIKEEEKEHFVMYHSEKLALFVVGLLNSPLDCTSRIVKNLNIYLDCHEF
        LDN+I+KLK NGY+TGT+MAL+ +++EEKEH +MYHSEKLAL   GLLNSPLDCT RIVKNL I LDCHEF
Subjt:  LDNVIEKLKGNGYITGTEMALFAIKEEEKEHFVMYHSEKLALFVVGLLNSPLDCTSRIVKNLNIYLDCHEF

A0A5A7US40 Pentatricopeptide repeat-containing protein1.7e-2174.65Show/hide
Query:  LDNVIEKLKGNGYITGTEMALFAIKEEEKEHFVMYHSEKLALFVVGLLNSPLDCTSRIVKNLNIYLDCHEF
        LDN+I+KLK NGY+TGT+MAL+ +++EEKEH +MYHSEKLAL   GLLNSPLDCT RIVKNL I LDCHEF
Subjt:  LDNVIEKLKGNGYITGTEMALFAIKEEEKEHFVMYHSEKLALFVVGLLNSPLDCTSRIVKNLNIYLDCHEF

A0A6J1BZP4 pentatricopeptide repeat-containing protein At4g21065-like6.7e-2383.1Show/hide
Query:  LDNVIEKLKGNGYITGTEMALFAIKEEEKEHFVMYHSEKLALFVVGLLNSPLDCTSRIVKNLNIYLDCHEF
        LDNVIEKLK NGYITGT MALF I+EEEKEH VMYHSEKLAL   GLLNSPLDC  RIVKNL I LDCHEF
Subjt:  LDNVIEKLKGNGYITGTEMALFAIKEEEKEHFVMYHSEKLALFVVGLLNSPLDCTSRIVKNLNIYLDCHEF

A0A6J1KY52 pentatricopeptide repeat-containing protein At4g21065-like2.8e-2176.06Show/hide
Query:  LDNVIEKLKGNGYITGTEMALFAIKEEEKEHFVMYHSEKLALFVVGLLNSPLDCTSRIVKNLNIYLDCHEF
        LDNV++KLK NGY+TGT+M+LF I++EEKEH VMYHSEKLAL   GLLNSPLDCT RIVKNL I  DCHEF
Subjt:  LDNVIEKLKGNGYITGTEMALFAIKEEEKEHFVMYHSEKLALFVVGLLNSPLDCTSRIVKNLNIYLDCHEF

SwissProt top hitse value%identityAlignment
O23337 Pentatricopeptide repeat-containing protein At4g148204.5e-0845.45Show/hide
Query:  LDNVIEKLKGNGYITGTEMALFAIKEEEKEHFVMYHSEKLALFVVGLLNSPLD-----C-TSRIVKNLNIYLDCHEF
        LD V+ KLK  GY+      L  ++EEEK+  V++HSEKLAL   GL+N   +     C   RIVKNL +  DCH F
Subjt:  LDNVIEKLKGNGYITGTEMALFAIKEEEKEHFVMYHSEKLALFVVGLLNSPLD-----C-TSRIVKNLNIYLDCHEF

P0C7R1 Pentatricopeptide repeat-containing protein DWY1, chloroplastic2.7e-0840.85Show/hide
Query:  LDNVIEKLKGNGYITGTEMALFAIKEEEKEHFVMYHSEKLALFVVGLLNSPLDCTSRIVKNLNIYLDCHEF
        L ++ ++++  GY+  T+  L  I EE KE  +M+HSE+LA+   G++N+P   T R++KNL I  DCH F
Subjt:  LDNVIEKLKGNGYITGTEMALFAIKEEEKEHFVMYHSEKLALFVVGLLNSPLDCTSRIVKNLNIYLDCHEF

Q8LK93 Pentatricopeptide repeat-containing protein At2g02980, chloroplastic4.8e-1047.14Show/hide
Query:  LDNVIEKLKGNGYITGTEMALFA-IKEEEKEHFVMYHSEKLALFVVGLLNSPLDCTSRIVKNLNIYLDCH
        LD ++++LK +GY+  T M + A + ++EKE  + YHSEKLA+   GLLN+P   T R+VKNL +  DCH
Subjt:  LDNVIEKLKGNGYITGTEMALFA-IKEEEKEHFVMYHSEKLALFVVGLLNSPLDCTSRIVKNLNIYLDCH

Q9FI49 Pentatricopeptide repeat-containing protein At5g509903.1e-0943.66Show/hide
Query:  LDNVIEKLKGNGYITGTEMALFAIKEEEKEHFVMYHSEKLALFVVGLLNSPLDCTSRIVKNLNIYLDCHEF
        L+ +I+K K  G+++ T++ L  + EEEKE  + YHSEKLAL  V L +SP     RI KN+ +  DCH +
Subjt:  LDNVIEKLKGNGYITGTEMALFAIKEEEKEHFVMYHSEKLALFVVGLLNSPLDCTSRIVKNLNIYLDCHEF

Q9SMZ2 Pentatricopeptide repeat-containing protein At4g331705.3e-0943.28Show/hide
Query:  NVIEKLKGNGYITGTEMALFAIKEEEKEHFVMYHSEKLALFVVGLLNSPLDCTSRIVKNLNIYLDCH
        ++I  +K  GY+  T+  L  ++EEEKE  + YHSEKLA+   GLL++P     R++KNL +  DCH
Subjt:  NVIEKLKGNGYITGTEMALFAIKEEEKEHFVMYHSEKLALFVVGLLNSPLDCTSRIVKNLNIYLDCH

Arabidopsis top hitse value%identityAlignment
AT1G47580.1 Pentatricopeptide repeat (PPR) superfamily protein1.9e-0940.85Show/hide
Query:  LDNVIEKLKGNGYITGTEMALFAIKEEEKEHFVMYHSEKLALFVVGLLNSPLDCTSRIVKNLNIYLDCHEF
        L ++ ++++  GY+  T+  L  I EE KE  +M+HSE+LA+   G++N+P   T R++KNL I  DCH F
Subjt:  LDNVIEKLKGNGYITGTEMALFAIKEEEKEHFVMYHSEKLALFVVGLLNSPLDCTSRIVKNLNIYLDCHEF

AT2G02980.1 Pentatricopeptide repeat (PPR) superfamily protein3.4e-1147.14Show/hide
Query:  LDNVIEKLKGNGYITGTEMALFA-IKEEEKEHFVMYHSEKLALFVVGLLNSPLDCTSRIVKNLNIYLDCH
        LD ++++LK +GY+  T M + A + ++EKE  + YHSEKLA+   GLLN+P   T R+VKNL +  DCH
Subjt:  LDNVIEKLKGNGYITGTEMALFA-IKEEEKEHFVMYHSEKLALFVVGLLNSPLDCTSRIVKNLNIYLDCH

AT4G14820.1 Pentatricopeptide repeat (PPR) superfamily protein3.2e-0945.45Show/hide
Query:  LDNVIEKLKGNGYITGTEMALFAIKEEEKEHFVMYHSEKLALFVVGLLNSPLD-----C-TSRIVKNLNIYLDCHEF
        LD V+ KLK  GY+      L  ++EEEK+  V++HSEKLAL   GL+N   +     C   RIVKNL +  DCH F
Subjt:  LDNVIEKLKGNGYITGTEMALFAIKEEEKEHFVMYHSEKLALFVVGLLNSPLD-----C-TSRIVKNLNIYLDCHEF

AT4G33170.1 Tetratricopeptide repeat (TPR)-like superfamily protein3.8e-1043.28Show/hide
Query:  NVIEKLKGNGYITGTEMALFAIKEEEKEHFVMYHSEKLALFVVGLLNSPLDCTSRIVKNLNIYLDCH
        ++I  +K  GY+  T+  L  ++EEEKE  + YHSEKLA+   GLL++P     R++KNL +  DCH
Subjt:  NVIEKLKGNGYITGTEMALFAIKEEEKEHFVMYHSEKLALFVVGLLNSPLDCTSRIVKNLNIYLDCH

AT5G50990.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.2e-1043.66Show/hide
Query:  LDNVIEKLKGNGYITGTEMALFAIKEEEKEHFVMYHSEKLALFVVGLLNSPLDCTSRIVKNLNIYLDCHEF
        L+ +I+K K  G+++ T++ L  + EEEKE  + YHSEKLAL  V L +SP     RI KN+ +  DCH +
Subjt:  LDNVIEKLKGNGYITGTEMALFAIKEEEKEHFVMYHSEKLALFVVGLLNSPLDCTSRIVKNLNIYLDCHEF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTGGACAATGTGATTGAGAAATTGAAAGGAAATGGTTACATTACGGGCACCGAAATGGCTTTGTTTGCTATTAAGGAAGAAGAGAAAGAACATTTTGTGATGTACCACAG
TGAGAAACTTGCTTTATTCGTTGTTGGTCTCTTAAATTCTCCTTTAGATTGCACCTCAAGGATAGTGAAAAATCTGAACATTTACTTGGACTGTCATGAGTTT
mRNA sequenceShow/hide mRNA sequence
TTGGACAATGTGATTGAGAAATTGAAAGGAAATGGTTACATTACGGGCACCGAAATGGCTTTGTTTGCTATTAAGGAAGAAGAGAAAGAACATTTTGTGATGTACCACAG
TGAGAAACTTGCTTTATTCGTTGTTGGTCTCTTAAATTCTCCTTTAGATTGCACCTCAAGGATAGTGAAAAATCTGAACATTTACTTGGACTGTCATGAGTTT
Protein sequenceShow/hide protein sequence
LDNVIEKLKGNGYITGTEMALFAIKEEEKEHFVMYHSEKLALFVVGLLNSPLDCTSRIVKNLNIYLDCHEF