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MS006755 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006755
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRAB6-interacting golgin
Genome locationscaffold60:129999..131576
RNA-Seq ExpressionMS006755
SyntenyMS006755
Gene Ontology termsGO:0005794 - Golgi apparatus (cellular component)
InterPro domainsIPR007033 - RAB6-interacting golgin


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004139478.1 uncharacterized protein LOC101203874 [Cucumis sativus]5.3e-5987.26Show/hide
Query:  MTTQKQSWEAQAQQSQMQRVRNSGMI-SHVN--AIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEAMADP
        MTTQKQSWEAQ    QMQRV+NSGMI S+VN   IGSPLKEDQ+EE+SRSA ALFRAKEEEIERKKMEMR+KVEARLGRAEEATKRLAEIREELE M DP
Subjt:  MTTQKQSWEAQAQQSQMQRVRNSGMI-SHVN--AIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEAMADP

Query:  MRKEVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVLELFNEKNREKSQLVAKLMEV
        MRKEVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVL+LFNEKN+EKSQLV+KLME+
Subjt:  MRKEVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVLELFNEKNREKSQLVAKLMEV

XP_008461743.1 PREDICTED: probable DNA double-strand break repair Rad50 ATPase [Cucumis melo]8.1e-6087.82Show/hide
Query:  MTTQKQSWEAQAQQSQMQRVRNSGMISH--VNAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEAMADPM
        MTTQKQSWEAQ    QMQRV+NSGMIS    N IGSPLKEDQ+EE+SRSA ALFRAKEEEIERKKMEMR+KVEARLGRAEEATKRLAEIREELE M DPM
Subjt:  MTTQKQSWEAQAQQSQMQRVRNSGMISH--VNAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEAMADPM

Query:  RKEVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVLELFNEKNREKSQLVAKLMEV
        RKEVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVL+LFNEKNREKSQLV+KLME+
Subjt:  RKEVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVLELFNEKNREKSQLVAKLMEV

XP_022142637.1 uncharacterized protein LOC111012700 [Momordica charantia]6.0e-7199.35Show/hide
Query:  MTTQKQSWEAQAQQSQMQRVRNSGMISHVNAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEAMADPMRK
        MTTQKQSWEAQAQQSQMQRVRNSGMISHVNAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEAMADPMRK
Subjt:  MTTQKQSWEAQAQQSQMQRVRNSGMISHVNAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEAMADPMRK

Query:  EVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVLELFNEKNREKSQLVAKLMEV
        EVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVLELFNEKNREKSQLVAKLME+
Subjt:  EVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVLELFNEKNREKSQLVAKLMEV

XP_022970344.1 uncharacterized protein LOC111469338 [Cucurbita maxima]4.3e-5382.47Show/hide
Query:  MTTQKQSWEAQAQQSQMQRVRNSGMISHVNAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEAMADPMRK
        MTTQKQSWEAQ  Q Q QRV+         AIGSP +EDQ+EELSRSA ALFRAKEEEIERKKMEMR+KVE RLGRAEEATKRLAEIREELE M DPMRK
Subjt:  MTTQKQSWEAQAQQSQMQRVRNSGMISHVNAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEAMADPMRK

Query:  EVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVLELFNEKNREKSQLVAKLMEV
        EVS IRKKIDLVNKELKPLG+TCQKKEREYKEVLEL NEKN+EKSQLVAKLME+
Subjt:  EVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVLELFNEKNREKSQLVAKLMEV

XP_038893849.1 uncharacterized protein LOC120082661 [Benincasa hispida]1.1e-5986.54Show/hide
Query:  MTTQKQSWEAQAQQSQMQRVRNSGMI--SHVNAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEAMADPM
        MTT KQSWEAQ Q  QMQRV+NSG++  S+VNAIGSP+KEDQ+EE+SRSA A+FRAKEEEIERKKMEMR+KVEARLGRAEEATKRLAEIREELE M DPM
Subjt:  MTTQKQSWEAQAQQSQMQRVRNSGMI--SHVNAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEAMADPM

Query:  RKEVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVLELFNEKNREKSQLVAKLMEV
        RKEVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVL+LFNEKN+EKSQLVAKLME+
Subjt:  RKEVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVLELFNEKNREKSQLVAKLMEV

TrEMBL top hitse value%identityAlignment
A0A0A0LY59 RAB6-interacting golgin2.6e-5987.26Show/hide
Query:  MTTQKQSWEAQAQQSQMQRVRNSGMI-SHVN--AIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEAMADP
        MTTQKQSWEAQ    QMQRV+NSGMI S+VN   IGSPLKEDQ+EE+SRSA ALFRAKEEEIERKKMEMR+KVEARLGRAEEATKRLAEIREELE M DP
Subjt:  MTTQKQSWEAQAQQSQMQRVRNSGMI-SHVN--AIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEAMADP

Query:  MRKEVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVLELFNEKNREKSQLVAKLMEV
        MRKEVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVL+LFNEKN+EKSQLV+KLME+
Subjt:  MRKEVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVLELFNEKNREKSQLVAKLMEV

A0A1S3CFV6 RAB6-interacting golgin3.9e-6087.82Show/hide
Query:  MTTQKQSWEAQAQQSQMQRVRNSGMISH--VNAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEAMADPM
        MTTQKQSWEAQ    QMQRV+NSGMIS    N IGSPLKEDQ+EE+SRSA ALFRAKEEEIERKKMEMR+KVEARLGRAEEATKRLAEIREELE M DPM
Subjt:  MTTQKQSWEAQAQQSQMQRVRNSGMISH--VNAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEAMADPM

Query:  RKEVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVLELFNEKNREKSQLVAKLMEV
        RKEVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVL+LFNEKNREKSQLV+KLME+
Subjt:  RKEVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVLELFNEKNREKSQLVAKLMEV

A0A5D3CH78 RAB6-interacting golgin3.9e-6087.82Show/hide
Query:  MTTQKQSWEAQAQQSQMQRVRNSGMISH--VNAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEAMADPM
        MTTQKQSWEAQ    QMQRV+NSGMIS    N IGSPLKEDQ+EE+SRSA ALFRAKEEEIERKKMEMR+KVEARLGRAEEATKRLAEIREELE M DPM
Subjt:  MTTQKQSWEAQAQQSQMQRVRNSGMISH--VNAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEAMADPM

Query:  RKEVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVLELFNEKNREKSQLVAKLMEV
        RKEVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVL+LFNEKNREKSQLV+KLME+
Subjt:  RKEVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVLELFNEKNREKSQLVAKLMEV

A0A6J1CNF1 RAB6-interacting golgin2.9e-7199.35Show/hide
Query:  MTTQKQSWEAQAQQSQMQRVRNSGMISHVNAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEAMADPMRK
        MTTQKQSWEAQAQQSQMQRVRNSGMISHVNAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEAMADPMRK
Subjt:  MTTQKQSWEAQAQQSQMQRVRNSGMISHVNAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEAMADPMRK

Query:  EVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVLELFNEKNREKSQLVAKLMEV
        EVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVLELFNEKNREKSQLVAKLME+
Subjt:  EVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVLELFNEKNREKSQLVAKLMEV

A0A6J1I589 RAB6-interacting golgin2.1e-5382.47Show/hide
Query:  MTTQKQSWEAQAQQSQMQRVRNSGMISHVNAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEAMADPMRK
        MTTQKQSWEAQ  Q Q QRV+         AIGSP +EDQ+EELSRSA ALFRAKEEEIERKKMEMR+KVE RLGRAEEATKRLAEIREELE M DPMRK
Subjt:  MTTQKQSWEAQAQQSQMQRVRNSGMISHVNAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEAMADPMRK

Query:  EVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVLELFNEKNREKSQLVAKLMEV
        EVS IRKKIDLVNKELKPLG+TCQKKEREYKEVLEL NEKN+EKSQLVAKLME+
Subjt:  EVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVLELFNEKNREKSQLVAKLMEV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G27740.1 Family of unknown function (DUF662)1.4e-4160.39Show/hide
Query:  MTTQKQSWEAQAQQSQMQRVRNSGMISHVNAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEAMADPMRK
        M T +Q  E Q Q   +QR+++SG IS     GSP+ ++++EELS+SAFALF+AKE+EIER+KME++D+V+ +LG AEEAT+RLAEIREELEA+ DPMRK
Subjt:  MTTQKQSWEAQAQQSQMQRVRNSGMISHVNAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEAMADPMRK

Query:  EVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVLELFNEKNREKSQLVAKLMEV
        E+S IRK++D +N+ELKPLG +CQ+KERE+KE LE +NEKN+EK+  V+KL+E+
Subjt:  EVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVLELFNEKNREKSQLVAKLMEV

AT2G36410.1 Family of unknown function (DUF662)8.4e-3958.5Show/hide
Query:  EAQAQQSQMQRVRNSGMISHVNAIG-SPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEAMADPMRKEVSFIRK
        + Q+Q     + +++ M+ H  ++  S     +DEE++RSA + FRAKE+EIE+++ME+R++++A+LGR E+ TKRL+ IREELE+MADPMRKEVS +RK
Subjt:  EAQAQQSQMQRVRNSGMISHVNAIG-SPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEAMADPMRKEVSFIRK

Query:  KIDLVNKELKPLGLTCQKKEREYKEVLELFNEKNREKSQLVAKLMEV
        KID VNKELKPLG T QKKEREYKE L+ FNEKNREK QL+ KLME+
Subjt:  KIDLVNKELKPLGLTCQKKEREYKEVLELFNEKNREKSQLVAKLMEV

AT2G36410.2 Family of unknown function (DUF662)8.4e-3958.5Show/hide
Query:  EAQAQQSQMQRVRNSGMISHVNAIG-SPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEAMADPMRKEVSFIRK
        + Q+Q     + +++ M+ H  ++  S     +DEE++RSA + FRAKE+EIE+++ME+R++++A+LGR E+ TKRL+ IREELE+MADPMRKEVS +RK
Subjt:  EAQAQQSQMQRVRNSGMISHVNAIG-SPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEAMADPMRKEVSFIRK

Query:  KIDLVNKELKPLGLTCQKKEREYKEVLELFNEKNREKSQLVAKLMEV
        KID VNKELKPLG T QKKEREYKE L+ FNEKNREK QL+ KLME+
Subjt:  KIDLVNKELKPLGLTCQKKEREYKEVLELFNEKNREKSQLVAKLMEV

AT3G52920.1 Family of unknown function (DUF662)6.5e-3972.17Show/hide
Query:  QDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEAMADPMRKEVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVLELFNE
        +DEE++RSA + FRAKE+EIE++KME+R++V+A+LGR EE T+RLA IREELE MADPMRKEV+++RKKID VNKELKPLG T QKKEREYKE L+ FNE
Subjt:  QDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEAMADPMRKEVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVLELFNE

Query:  KNREKSQLVAKLMEV
        KNREK QL+ KLME+
Subjt:  KNREKSQLVAKLMEV

AT3G52920.2 Family of unknown function (DUF662)6.5e-3972.17Show/hide
Query:  QDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEAMADPMRKEVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVLELFNE
        +DEE++RSA + FRAKE+EIE++KME+R++V+A+LGR EE T+RLA IREELE MADPMRKEV+++RKKID VNKELKPLG T QKKEREYKE L+ FNE
Subjt:  QDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEAMADPMRKEVSFIRKKIDLVNKELKPLGLTCQKKEREYKEVLELFNE

Query:  KNREKSQLVAKLMEV
        KNREK QL+ KLME+
Subjt:  KNREKSQLVAKLMEV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGACGCAGAAACAGAGCTGGGAGGCGCAGGCGCAACAATCGCAGATGCAGCGAGTGAGGAACTCGGGCATGATAAGCCATGTGAATGCGATTGGGAGTCCGTTGAA
GGAGGATCAAGACGAGGAGCTTTCGCGATCGGCGTTCGCTCTGTTCCGCGCCAAGGAAGAGGAGATCGAGAGGAAGAAGATGGAGATGAGAGACAAGGTGGAGGCACGCC
TTGGAAGAGCCGAGGAAGCCACCAAGCGATTGGCGGAGATTCGCGAAGAACTTGAAGCTATGGCGGATCCAATGAGGAAGGAAGTATCGTTCATCCGGAAGAAGATTGAT
TTGGTGAACAAAGAGTTGAAGCCATTGGGACTCACCTGCCAAAAGAAGGAGAGGGAATACAAAGAAGTGCTAGAGTTATTCAATGAGAAGAACAGAGAGAAATCTCAATT
GGTAGCCAAACTTATGGAGGTG
mRNA sequenceShow/hide mRNA sequence
ATGACGACGCAGAAACAGAGCTGGGAGGCGCAGGCGCAACAATCGCAGATGCAGCGAGTGAGGAACTCGGGCATGATAAGCCATGTGAATGCGATTGGGAGTCCGTTGAA
GGAGGATCAAGACGAGGAGCTTTCGCGATCGGCGTTCGCTCTGTTCCGCGCCAAGGAAGAGGAGATCGAGAGGAAGAAGATGGAGATGAGAGACAAGGTGGAGGCACGCC
TTGGAAGAGCCGAGGAAGCCACCAAGCGATTGGCGGAGATTCGCGAAGAACTTGAAGCTATGGCGGATCCAATGAGGAAGGAAGTATCGTTCATCCGGAAGAAGATTGAT
TTGGTGAACAAAGAGTTGAAGCCATTGGGACTCACCTGCCAAAAGAAGGAGAGGGAATACAAAGAAGTGCTAGAGTTATTCAATGAGAAGAACAGAGAGAAATCTCAATT
GGTAGCCAAACTTATGGAGGTG
Protein sequenceShow/hide protein sequence
MTTQKQSWEAQAQQSQMQRVRNSGMISHVNAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEAMADPMRKEVSFIRKKID
LVNKELKPLGLTCQKKEREYKEVLELFNEKNREKSQLVAKLMEV