; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS006768 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006768
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionsplicing factor U2af small subunit B-like
Genome locationscaffold60:234845..236359
RNA-Seq ExpressionMS006768
SyntenyMS006768
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0089701 - U2AF (cellular component)
GO:0030628 - pre-mRNA 3'-splice site binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR000571 - Zinc finger, CCCH-type
IPR003954 - RNA recognition motif domain, eukaryote
IPR009145 - U2 auxiliary factor small subunit
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008461981.1 PREDICTED: splicing factor U2af small subunit B-like [Cucumis melo]8.4e-11173.29Show/hide
Query:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL
        +ASI GT+  R NCPFY K+GACRHGD+CSRLH KP ISPTLLLSNMYQR D I+PGVDA+GNPIDPRKIQ HFEEFYED+F+E++KYGEIESLNVCDNL
Subjt:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL

Query:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSPVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWELRSRLF----------RTRSHSPDR
         DHMVGNVYVQ+REE QAANALRNL  R+Y G  I VDFSPVTDF  A CR+YEENMCN G YCNFMHLKRI  ELR  LF          R+RS SP R
Subjt:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSPVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWELRSRLF----------RTRSHSPDR

Query:  HRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFDGSKSSH
        HR+YE+RSYGRHGHSRRYD+RDAYHE+RSRR R+TSPG  RSRSRS RGR+NRSP REGS ERRA+ EQWNRE  +Q N NNA  D +++SH
Subjt:  HRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFDGSKSSH

XP_022152942.1 splicing factor U2af small subunit B-like [Momordica charantia]2.6e-15295.21Show/hide
Query:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL
        MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL
Subjt:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL

Query:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSPVTDFIVAACRRYEENMCNFGPYCNFMHLKRISW----------ELRSRLFRTRSHSPDR
        GDHMVGNVYVQYREEGQAANAL NLRDRYYGGLLIRVDFS VTDFIVAACRRYEENMCNFGPYCNFMHLKRISW           LRSRLFRTRSHS DR
Subjt:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSPVTDFIVAACRRYEENMCNFGPYCNFMHLKRISW----------ELRSRLFRTRSHSPDR

Query:  HRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFDGSKSSH
        HRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFDGSKSSH
Subjt:  HRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFDGSKSSH

XP_022964867.1 splicing factor U2af small subunit B-like [Cucurbita moschata]4.8e-11473.97Show/hide
Query:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL
        +ASI GT+  R NCPFY K+GACRHGD+CSRLH KP ISPTLLLSNMYQR D I+PGVDA+GNPIDPRKIQ HFEEFYED+F+E++KYGEIESLNVCDNL
Subjt:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL

Query:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSPVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWELRSRLF----------RTRSHSPDR
         DHMVGNVYVQ++EE QAANALRNL  R+Y G  I VDFSPVTDF  A CR+YEENMCN G YCNFMHLKRIS ELR  LF          R+RS SP R
Subjt:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSPVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWELRSRLF----------RTRSHSPDR

Query:  HRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFDGSKSSH
        HR+YE+R YGRHGHSRRYD+RDAYH+SR+RR RSTSPG R SRSRS RGR+NRSPVREGS ERRA+ EQWNRE  QQ N+NN+N DG ++SH
Subjt:  HRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFDGSKSSH

XP_022970323.1 splicing factor U2af small subunit B-like [Cucurbita maxima]4.5e-11273.63Show/hide
Query:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL
        +ASI GT+  R NCPFY K+GACRHGD+CSRLH KP ISPTLLLSNMYQR D I+PGVDA+GNPIDPRKIQ HFEEFYED+F+E++KYGEIESLNVCDNL
Subjt:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL

Query:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSPVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWELRSRLF----------RTRSHSPDR
         DHMVGNVYVQ++EE QAANALRNL  R+Y G  I VDFSPVTDF  A CR+YEENMCN G YCNFMHLKRIS ELR  LF          R+RS SP R
Subjt:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSPVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWELRSRLF----------RTRSHSPDR

Query:  HRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFDGSKSSH
        HR+YE+R YGRHGHSRRYD+RDAYH+SR+RR RSTSPG R SRSRS RGR+NRSPVRE S ERRA+ EQWNRE  +Q N+NNAN DG++ SH
Subjt:  HRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFDGSKSSH

XP_023519661.1 splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo]1.3e-11474.32Show/hide
Query:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL
        +ASI GT+  R NCPFY K+GACRHGD+CSRLH KP ISPTLLLSNMYQR D I+PGVDA+GNPIDPRKIQ HFEEFYED+F+E++KYGEIESLNVCDNL
Subjt:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL

Query:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSPVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWELRSRLF----------RTRSHSPDR
         DHMVGNVYVQ++EE QAANALRNL  R+Y G  I VDFSPVTDF  A CR+YEENMCN G YCNFMHLKRIS ELR  LF          R+RS SP R
Subjt:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSPVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWELRSRLF----------RTRSHSPDR

Query:  HRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFDGSKSSH
        HR+YE+R YGRHGHSRRYD+RDAYH+SR+RR RSTSPG R SRSRS RGR+NRSPVREGS ERRA+ EQWNRE  QQ N+NNAN DG+++SH
Subjt:  HRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFDGSKSSH

TrEMBL top hitse value%identityAlignment
A0A1S3CFU2 splicing factor U2af small subunit B-like4.1e-11173.29Show/hide
Query:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL
        +ASI GT+  R NCPFY K+GACRHGD+CSRLH KP ISPTLLLSNMYQR D I+PGVDA+GNPIDPRKIQ HFEEFYED+F+E++KYGEIESLNVCDNL
Subjt:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL

Query:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSPVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWELRSRLF----------RTRSHSPDR
         DHMVGNVYVQ+REE QAANALRNL  R+Y G  I VDFSPVTDF  A CR+YEENMCN G YCNFMHLKRI  ELR  LF          R+RS SP R
Subjt:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSPVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWELRSRLF----------RTRSHSPDR

Query:  HRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFDGSKSSH
        HR+YE+RSYGRHGHSRRYD+RDAYHE+RSRR R+TSPG  RSRSRS RGR+NRSP REGS ERRA+ EQWNRE  +Q N NNA  D +++SH
Subjt:  HRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFDGSKSSH

A0A5D3CV58 Splicing factor U2af small subunit B-like4.1e-11173.29Show/hide
Query:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL
        +ASI GT+  R NCPFY K+GACRHGD+CSRLH KP ISPTLLLSNMYQR D I+PGVDA+GNPIDPRKIQ HFEEFYED+F+E++KYGEIESLNVCDNL
Subjt:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL

Query:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSPVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWELRSRLF----------RTRSHSPDR
         DHMVGNVYVQ+REE QAANALRNL  R+Y G  I VDFSPVTDF  A CR+YEENMCN G YCNFMHLKRI  ELR  LF          R+RS SP R
Subjt:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSPVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWELRSRLF----------RTRSHSPDR

Query:  HRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFDGSKSSH
        HR+YE+RSYGRHGHSRRYD+RDAYHE+RSRR R+TSPG  RSRSRS RGR+NRSP REGS ERRA+ EQWNRE  +Q N NNA  D +++SH
Subjt:  HRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFDGSKSSH

A0A6J1DHM1 splicing factor U2af small subunit B-like1.3e-15295.21Show/hide
Query:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL
        MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL
Subjt:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL

Query:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSPVTDFIVAACRRYEENMCNFGPYCNFMHLKRISW----------ELRSRLFRTRSHSPDR
        GDHMVGNVYVQYREEGQAANAL NLRDRYYGGLLIRVDFS VTDFIVAACRRYEENMCNFGPYCNFMHLKRISW           LRSRLFRTRSHS DR
Subjt:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSPVTDFIVAACRRYEENMCNFGPYCNFMHLKRISW----------ELRSRLFRTRSHSPDR

Query:  HRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFDGSKSSH
        HRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFDGSKSSH
Subjt:  HRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFDGSKSSH

A0A6J1HM65 splicing factor U2af small subunit B-like2.3e-11473.97Show/hide
Query:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL
        +ASI GT+  R NCPFY K+GACRHGD+CSRLH KP ISPTLLLSNMYQR D I+PGVDA+GNPIDPRKIQ HFEEFYED+F+E++KYGEIESLNVCDNL
Subjt:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL

Query:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSPVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWELRSRLF----------RTRSHSPDR
         DHMVGNVYVQ++EE QAANALRNL  R+Y G  I VDFSPVTDF  A CR+YEENMCN G YCNFMHLKRIS ELR  LF          R+RS SP R
Subjt:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSPVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWELRSRLF----------RTRSHSPDR

Query:  HRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFDGSKSSH
        HR+YE+R YGRHGHSRRYD+RDAYH+SR+RR RSTSPG R SRSRS RGR+NRSPVREGS ERRA+ EQWNRE  QQ N+NN+N DG ++SH
Subjt:  HRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFDGSKSSH

A0A6J1I2J7 splicing factor U2af small subunit B-like2.2e-11273.63Show/hide
Query:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL
        +ASI GT+  R NCPFY K+GACRHGD+CSRLH KP ISPTLLLSNMYQR D I+PGVDA+GNPIDPRKIQ HFEEFYED+F+E++KYGEIESLNVCDNL
Subjt:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL

Query:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSPVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWELRSRLF----------RTRSHSPDR
         DHMVGNVYVQ++EE QAANALRNL  R+Y G  I VDFSPVTDF  A CR+YEENMCN G YCNFMHLKRIS ELR  LF          R+RS SP R
Subjt:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSPVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWELRSRLF----------RTRSHSPDR

Query:  HRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFDGSKSSH
        HR+YE+R YGRHGHSRRYD+RDAYH+SR+RR RSTSPG R SRSRS RGR+NRSPVRE S ERRA+ EQWNRE  +Q N+NNAN DG++ SH
Subjt:  HRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFDGSKSSH

SwissProt top hitse value%identityAlignment
A1A4K8 Splicing factor U2AF 35 kDa subunit3.9e-5045.12Show/hide
Query:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEM-SKYGEIESLNVCDN
        +ASI GT+  + NC FY K+GACRHGD+CSRLH KP  S T+ L N+Y+     S   D     +   ++Q H++EF+E++F EM  KYGE+E +NVCDN
Subjt:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEM-SKYGEIESLNVCDN

Query:  LGDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSPVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWELRSRLF-----RTRSHSPDRHRNY
        LGDH+VGNVYV++R E  A  A+ +L +R++ G  I  + SPVTDF  A CR+YE   C  G +CNFMHLK IS ELR  L+     + RS S  R R  
Subjt:  LGDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSPVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWELRSRLF-----RTRSHSPDRHRNY

Query:  EQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGR
          R  GR G       R+                RRRSR R   GR
Subjt:  EQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGR

Q6AUG0 Splicing factor U2af small subunit B1.5e-7353.18Show/hide
Query:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL
        +ASI GT+  R NCPFY K+GACRHGD+CSRLH +P +SPT++L+NMYQR D I+PGVDA+G PIDP K+Q HFE+FYEDI+EE+SK+GE+E+LNVCDNL
Subjt:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL

Query:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSPVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWELRSRLF---------RTRSHSPDRH
         DHM+GNVYVQ+REE QA  A   L+ R+Y G  I V++SPVTDF  A CR++EEN CN G YCNFMH+K+I  ELR +L+         R+RS SP RH
Subjt:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSPVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWELRSRLF---------RTRSHSPDRH

Query:  RNYEQ-------------------RSYGRHGHSRRYDDRDAY--------HESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNRE
        R   +                   R  G  G    Y   D+Y            SR  R    GRRR  S     RR RSPVRE S ERRA+ EQWNRE
Subjt:  RNYEQ-------------------RSYGRHGHSRRYDDRDAY--------HESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNRE

Q9FMY5 Splicing factor U2af small subunit B3.6e-8057.89Show/hide
Query:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL
        +ASI GT+  R NCPFY K+GACRHGD+CSRLH +P ISPTLLLSNMYQR D I+PGVD +G P+DP KIQ HFE+FYEDIFEE++K+GE+ESLNVCDNL
Subjt:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL

Query:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSPVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWELRSRLF-------------RTRSHS
         DHM+GNVYV ++EE  AA AL+ L+ R+Y G  I  DFSPVTDF  A CR+YEEN CN G YCNFMH+K+IS ELR +LF             R+RS S
Subjt:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSPVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWELRSRLF-------------RTRSHS

Query:  PDRHRNYEQ-------RSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSP--VREGSGERRARFEQWNRE
        P R R + +       R   RHG+ +R  DR   H+           GRRR  S     +R+RSP  VREGS ERRAR EQWNRE
Subjt:  PDRHRNYEQ-------RSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSP--VREGSGERRARFEQWNRE

Q9S709 Splicing factor U2af small subunit A1.6e-8057.34Show/hide
Query:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL
        +ASI GT+  R NCPFY K+GACRHGD+CSRLH +P ISPTLLLSNMYQR D I+PGVDA+G P+DPRKIQ HFE+F+ED+FEE+ K+GEIESLN+CDNL
Subjt:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL

Query:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSPVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWELRSRLF---------------RTRS
         DHM+GNVYVQ++EE QAA AL+ L+ R+Y G  I  DFSPVTDF  A CR+YEEN CN G YCNFMH+K +S ELR +LF               R+RS
Subjt:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSPVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWELRSRLF---------------RTRS

Query:  HSPDRHRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPV--------REGSGERRARFEQWNRE
         SP   R+ ++R       S R  DR+ Y     +RS   S  + R  S   RGRR  SP         REGS ERRAR EQWNRE
Subjt:  HSPDRHRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPV--------REGSGERRARFEQWNRE

Q9ZQW8 Splicing factor U2af small subunit A4.2e-8158.74Show/hide
Query:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL
        +ASI GT+  R NCPFY K+GACRHGD+CSRLH KP +SPTLLLSNMY R D I+PG+DA+GNPIDP KIQ  FE+FYEDIFEE+SKYGEIESL+VCDN 
Subjt:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL

Query:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSPVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWELRSRLF-----RTRSHSPDRHRN--
         DHM+GNVYVQ+REE QAA AL+ L  RYY G  I V+FSPV+DF  A CR+YEEN CN G YCNFMH+K I  +LR RLF       RSHS  R R+  
Subjt:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSPVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWELRSRLF-----RTRSHSPDRHRN--

Query:  --YEQRSYGRHGHSRRYDDRDAYH--------------ESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNRE
          + +R Y R   SR  D  D Y                 R R S  +   RRR RSR+      RSPVR+GS ERRA+ EQWNRE
Subjt:  --YEQRSYGRHGHSRRYDDRDAYH--------------ESRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNRE

Arabidopsis top hitse value%identityAlignment
AT1G10320.1 Zinc finger C-x8-C-x5-C-x3-H type family protein2.1e-2230.82Show/hide
Query:  GTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGV---DARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNLGD
        GT+  +A+CPF+ K GACR G +CSR+H  P  S TLL+ NMY       PG+      G      + +  +EEFYED+  E  KYGE+ +  VC N   
Subjt:  GTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGV---DARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNLGD

Query:  HMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSPVTDFIVAACRRYEEN---MCNFGPYCNFMHLKR-----ISWELRSR---------LFRTRS
        H+ GNVYV YR    A  A +++  RY+ G  +  +F  ++ + VA C  Y ++    C+ G  CNF+H  R       W    R         +     
Subjt:  HMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSPVTDFIVAACRRYEEN---MCNFGPYCNFMHLKR-----ISWELRSR---------LFRTRS

Query:  HSPDRHRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSR-SLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFD
        +S ++H  +E  S G    S      D+ H   SRRSRS         S  S R R+     ++ + E + R    N   G  +   + + +
Subjt:  HSPDRHRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSR-SLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFD

AT1G27650.1 U2 snRNP auxiliary factor small subunit, putative1.1e-8157.34Show/hide
Query:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL
        +ASI GT+  R NCPFY K+GACRHGD+CSRLH +P ISPTLLLSNMYQR D I+PGVDA+G P+DPRKIQ HFE+F+ED+FEE+ K+GEIESLN+CDNL
Subjt:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL

Query:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSPVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWELRSRLF---------------RTRS
         DHM+GNVYVQ++EE QAA AL+ L+ R+Y G  I  DFSPVTDF  A CR+YEEN CN G YCNFMH+K +S ELR +LF               R+RS
Subjt:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSPVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWELRSRLF---------------RTRS

Query:  HSPDRHRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPV--------REGSGERRARFEQWNRE
         SP   R+ ++R       S R  DR+ Y     +RS   S  + R  S   RGRR  SP         REGS ERRAR EQWNRE
Subjt:  HSPDRHRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSPV--------REGSGERRARFEQWNRE

AT1G27650.2 U2 snRNP auxiliary factor small subunit, putative3.6e-5954.17Show/hide
Query:  MYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNLGDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSPVTDFI
        MYQR D I+PGVDA+G P+DPRKIQ HFE+F+ED+FEE+ K+GEIESLN+CDNL DHM+GNVYVQ++EE QAA AL+ L+ R+Y G  I  DFSPVTDF 
Subjt:  MYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNLGDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSPVTDFI

Query:  VAACRRYEENMCNFGPYCNFMHLKRISWELRSRLF---------------RTRSHSPDRHRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRR
         A CR+YEEN CN G YCNFMH+K +S ELR +LF               R+RS SP   R+ ++R       S R  DR+ Y     +RS   S  + R
Subjt:  VAACRRYEENMCNFGPYCNFMHLKRISWELRSRLF---------------RTRSHSPDRHRNYEQRSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRR

Query:  SRSRSLRGRRNRSPV--------REGSGERRARFEQWNRE
          S   RGRR  SP         REGS ERRAR EQWNRE
Subjt:  SRSRSLRGRRNRSPV--------REGSGERRARFEQWNRE

AT5G42820.1 Zinc finger C-x8-C-x5-C-x3-H type family protein2.6e-8157.89Show/hide
Query:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL
        +ASI GT+  R NCPFY K+GACRHGD+CSRLH +P ISPTLLLSNMYQR D I+PGVD +G P+DP KIQ HFE+FYEDIFEE++K+GE+ESLNVCDNL
Subjt:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL

Query:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSPVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWELRSRLF-------------RTRSHS
         DHM+GNVYV ++EE  AA AL+ L+ R+Y G  I  DFSPVTDF  A CR+YEEN CN G YCNFMH+K+IS ELR +LF             R+RS S
Subjt:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSPVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWELRSRLF-------------RTRSHS

Query:  PDRHRNYEQ-------RSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSP--VREGSGERRARFEQWNRE
        P R R + +       R   RHG+ +R  DR   H+           GRRR  S     +R+RSP  VREGS ERRAR EQWNRE
Subjt:  PDRHRNYEQ-------RSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSP--VREGSGERRARFEQWNRE

AT5G42820.2 Zinc finger C-x8-C-x5-C-x3-H type family protein2.6e-8157.89Show/hide
Query:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL
        +ASI GT+  R NCPFY K+GACRHGD+CSRLH +P ISPTLLLSNMYQR D I+PGVD +G P+DP KIQ HFE+FYEDIFEE++K+GE+ESLNVCDNL
Subjt:  MASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNL

Query:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSPVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWELRSRLF-------------RTRSHS
         DHM+GNVYV ++EE  AA AL+ L+ R+Y G  I  DFSPVTDF  A CR+YEEN CN G YCNFMH+K+IS ELR +LF             R+RS S
Subjt:  GDHMVGNVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSPVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWELRSRLF-------------RTRSHS

Query:  PDRHRNYEQ-------RSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSP--VREGSGERRARFEQWNRE
        P R R + +       R   RHG+ +R  DR   H+           GRRR  S     +R+RSP  VREGS ERRAR EQWNRE
Subjt:  PDRHRNYEQ-------RSYGRHGHSRRYDDRDAYHESRSRRSRSTSPGRRRSRSRSLRGRRNRSP--VREGSGERRARFEQWNRE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGAGGTGCTGTAATGGCCTCCATTTCCGGGACGCAGATGGGCAGGGCTAACTGTCCCTTCTACTCCAAGGTCGGGGCCTGCCGCCATGGCGATCAGTGTTCCCGGTTGCA
CCCCAAGCCTCTCATAAGCCCCACACTCTTGCTTTCTAATATGTACCAGAGACTTGATACGATTAGCCCTGGTGTCGACGCGCGCGGAAATCCGATCGACCCTCGTAAGA
TCCAGCGCCATTTTGAGGAGTTCTATGAAGATATATTCGAGGAAATGAGCAAGTACGGTGAGATTGAGAGTTTGAATGTCTGTGACAACCTAGGTGACCACATGGTGGGT
AATGTTTATGTTCAATATCGAGAGGAGGGGCAAGCCGCAAATGCTCTTCGGAATCTTAGGGACAGATATTATGGTGGACTTCTAATTAGAGTCGACTTCTCTCCAGTGAC
AGACTTTATAGTAGCCGCTTGTAGACGATACGAAGAGAACATGTGTAATTTTGGTCCCTATTGTAATTTCATGCATCTGAAGAGGATAAGTTGGGAGCTGAGGAGCAGAC
TGTTTAGGACCAGGAGCCACAGCCCCGATAGGCATCGGAATTATGAACAACGCTCTTATGGTAGACATGGTCATAGTCGGAGGTATGATGACCGAGATGCTTATCATGAA
AGCCGGAGCAGGAGGAGTAGGAGTACAAGCCCAGGTCGTAGAAGAAGCAGAAGTCGTAGTCTGCGGGGAAGGAGGAACCGAAGTCCAGTTAGAGAAGGGAGCGGAGAGAG
GCGAGCTAGATTTGAGCAGTGGAACAGGGAAGGAGGACAGCAAGCAAATCATAACAATGCCAATTTTGATGGAAGTAAAAGTAGTCAT
mRNA sequenceShow/hide mRNA sequence
AGAGGTGCTGTAATGGCCTCCATTTCCGGGACGCAGATGGGCAGGGCTAACTGTCCCTTCTACTCCAAGGTCGGGGCCTGCCGCCATGGCGATCAGTGTTCCCGGTTGCA
CCCCAAGCCTCTCATAAGCCCCACACTCTTGCTTTCTAATATGTACCAGAGACTTGATACGATTAGCCCTGGTGTCGACGCGCGCGGAAATCCGATCGACCCTCGTAAGA
TCCAGCGCCATTTTGAGGAGTTCTATGAAGATATATTCGAGGAAATGAGCAAGTACGGTGAGATTGAGAGTTTGAATGTCTGTGACAACCTAGGTGACCACATGGTGGGT
AATGTTTATGTTCAATATCGAGAGGAGGGGCAAGCCGCAAATGCTCTTCGGAATCTTAGGGACAGATATTATGGTGGACTTCTAATTAGAGTCGACTTCTCTCCAGTGAC
AGACTTTATAGTAGCCGCTTGTAGACGATACGAAGAGAACATGTGTAATTTTGGTCCCTATTGTAATTTCATGCATCTGAAGAGGATAAGTTGGGAGCTGAGGAGCAGAC
TGTTTAGGACCAGGAGCCACAGCCCCGATAGGCATCGGAATTATGAACAACGCTCTTATGGTAGACATGGTCATAGTCGGAGGTATGATGACCGAGATGCTTATCATGAA
AGCCGGAGCAGGAGGAGTAGGAGTACAAGCCCAGGTCGTAGAAGAAGCAGAAGTCGTAGTCTGCGGGGAAGGAGGAACCGAAGTCCAGTTAGAGAAGGGAGCGGAGAGAG
GCGAGCTAGATTTGAGCAGTGGAACAGGGAAGGAGGACAGCAAGCAAATCATAACAATGCCAATTTTGATGGAAGTAAAAGTAGTCAT
Protein sequenceShow/hide protein sequence
RGAVMASISGTQMGRANCPFYSKVGACRHGDQCSRLHPKPLISPTLLLSNMYQRLDTISPGVDARGNPIDPRKIQRHFEEFYEDIFEEMSKYGEIESLNVCDNLGDHMVG
NVYVQYREEGQAANALRNLRDRYYGGLLIRVDFSPVTDFIVAACRRYEENMCNFGPYCNFMHLKRISWELRSRLFRTRSHSPDRHRNYEQRSYGRHGHSRRYDDRDAYHE
SRSRRSRSTSPGRRRSRSRSLRGRRNRSPVREGSGERRARFEQWNREGGQQANHNNANFDGSKSSH