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MS006775 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006775
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionsyndetin isoform X1
Genome locationscaffold60:279098..279325
RNA-Seq ExpressionMS006775
SyntenyMS006775
Gene Ontology termsGO:0032456 - endocytic recycling (biological process)
GO:0042147 - retrograde transport, endosome to Golgi (biological process)
GO:0005829 - cytosol (cellular component)
GO:1990745 - EARP complex (cellular component)
InterPro domainsIPR040047 - Syndetin


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7019305.1 Syndetin [Cucurbita argyrosperma subsp. argyrosperma]1.3e-3194.74Show/hide
Query:  MQPNLFPFGSVLGNPLAFDGDLSEGFPTSRFLFFVPFFLLQGGGMDLSRVGEKILSSVRSARSLGLLPATSDRPEV
        MQPNLFPFGSVLGNPLAFDGDLSEGF TSRFLFFVPFFLLQGGGMDLS+VGEKILSSVRSARSLGLL  TSDRPEV
Subjt:  MQPNLFPFGSVLGNPLAFDGDLSEGFPTSRFLFFVPFFLLQGGGMDLSRVGEKILSSVRSARSLGLLPATSDRPEV
XP_022152900.1 syndetin isoform X1 [Momordica charantia]2.2e-34100Show/hide
Query:  MQPNLFPFGSVLGNPLAFDGDLSEGFPTSRFLFFVPFFLLQGGGMDLSRVGEKILSSVRSARSLGLLPATSDRPEV
        MQPNLFPFGSVLGNPLAFDGDLSEGFPTSRFLFFVPFFLLQGGGMDLSRVGEKILSSVRSARSLGLLPATSDRPEV
Subjt:  MQPNLFPFGSVLGNPLAFDGDLSEGFPTSRFLFFVPFFLLQGGGMDLSRVGEKILSSVRSARSLGLLPATSDRPEV
XP_022152901.1 syndetin isoform X2 [Momordica charantia]2.2e-34100Show/hide
Query:  MQPNLFPFGSVLGNPLAFDGDLSEGFPTSRFLFFVPFFLLQGGGMDLSRVGEKILSSVRSARSLGLLPATSDRPEV
        MQPNLFPFGSVLGNPLAFDGDLSEGFPTSRFLFFVPFFLLQGGGMDLSRVGEKILSSVRSARSLGLLPATSDRPEV
Subjt:  MQPNLFPFGSVLGNPLAFDGDLSEGFPTSRFLFFVPFFLLQGGGMDLSRVGEKILSSVRSARSLGLLPATSDRPEV
XP_022964722.1 syndetin-like isoform X1 [Cucurbita moschata]1.3e-3194.74Show/hide
Query:  MQPNLFPFGSVLGNPLAFDGDLSEGFPTSRFLFFVPFFLLQGGGMDLSRVGEKILSSVRSARSLGLLPATSDRPEV
        MQPNLFPFGSVLGNPLAFDGDLSEGF TSRFLFFVPFFLLQGGGMDLS+VGEKILSSVRSARSLGLL  TSDRPEV
Subjt:  MQPNLFPFGSVLGNPLAFDGDLSEGFPTSRFLFFVPFFLLQGGGMDLSRVGEKILSSVRSARSLGLLPATSDRPEV
XP_038895533.1 syndetin isoform X1 [Benincasa hispida]6.0e-3294.74Show/hide
Query:  MQPNLFPFGSVLGNPLAFDGDLSEGFPTSRFLFFVPFFLLQGGGMDLSRVGEKILSSVRSARSLGLLPATSDRPEV
        MQPNLFPFGSVLGNPLAFDGDLSEGF TSRFLFFVPF LLQGGGMDLS+VGEKILSSVRSARSLGLLP TSDRPEV
Subjt:  MQPNLFPFGSVLGNPLAFDGDLSEGFPTSRFLFFVPFFLLQGGGMDLSRVGEKILSSVRSARSLGLLPATSDRPEV
TrEMBL top hitse value%identityAlignment
A0A1S3CG39 syndetin8.5e-3293.42Show/hide
Query:  MQPNLFPFGSVLGNPLAFDGDLSEGFPTSRFLFFVPFFLLQGGGMDLSRVGEKILSSVRSARSLGLLPATSDRPEV
        MQPNLFPFGS LGNPLAFDGDLSEGF TSRFLFFVPF LLQGGGMDLS+VGEKILSSVRSARSLGLLP TSDRPEV
Subjt:  MQPNLFPFGSVLGNPLAFDGDLSEGFPTSRFLFFVPFFLLQGGGMDLSRVGEKILSSVRSARSLGLLPATSDRPEV
A0A6J1DF95 syndetin isoform X11.1e-34100Show/hide
Query:  MQPNLFPFGSVLGNPLAFDGDLSEGFPTSRFLFFVPFFLLQGGGMDLSRVGEKILSSVRSARSLGLLPATSDRPEV
        MQPNLFPFGSVLGNPLAFDGDLSEGFPTSRFLFFVPFFLLQGGGMDLSRVGEKILSSVRSARSLGLLPATSDRPEV
Subjt:  MQPNLFPFGSVLGNPLAFDGDLSEGFPTSRFLFFVPFFLLQGGGMDLSRVGEKILSSVRSARSLGLLPATSDRPEV
A0A6J1DJ46 syndetin isoform X21.1e-34100Show/hide
Query:  MQPNLFPFGSVLGNPLAFDGDLSEGFPTSRFLFFVPFFLLQGGGMDLSRVGEKILSSVRSARSLGLLPATSDRPEV
        MQPNLFPFGSVLGNPLAFDGDLSEGFPTSRFLFFVPFFLLQGGGMDLSRVGEKILSSVRSARSLGLLPATSDRPEV
Subjt:  MQPNLFPFGSVLGNPLAFDGDLSEGFPTSRFLFFVPFFLLQGGGMDLSRVGEKILSSVRSARSLGLLPATSDRPEV
A0A6J1HII5 syndetin-like isoform X16.5e-3294.74Show/hide
Query:  MQPNLFPFGSVLGNPLAFDGDLSEGFPTSRFLFFVPFFLLQGGGMDLSRVGEKILSSVRSARSLGLLPATSDRPEV
        MQPNLFPFGSVLGNPLAFDGDLSEGF TSRFLFFVPFFLLQGGGMDLS+VGEKILSSVRSARSLGLL  TSDRPEV
Subjt:  MQPNLFPFGSVLGNPLAFDGDLSEGFPTSRFLFFVPFFLLQGGGMDLSRVGEKILSSVRSARSLGLLPATSDRPEV
A0A6J1I532 syndetin-like isoform X11.9e-3193.42Show/hide
Query:  MQPNLFPFGSVLGNPLAFDGDLSEGFPTSRFLFFVPFFLLQGGGMDLSRVGEKILSSVRSARSLGLLPATSDRPEV
        MQPNLFPFGSVLGNPLAF+GDLSEGF TSRFLFFVPFFLLQGGGMDLS+VGEKILSSVRSARSLGLL  TSDRPEV
Subjt:  MQPNLFPFGSVLGNPLAFDGDLSEGFPTSRFLFFVPFFLLQGGGMDLSRVGEKILSSVRSARSLGLLPATSDRPEV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G27900.1 CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 316 Blast hits to 252 proteins in 92 species: Archae - 0; Bacteria - 2; Metazoa - 200; Fungi - 2; Plants - 68; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).4.8e-1963.22Show/hide
Query:  MQPNL-FPFGSVLGNPLAFD--GDLSE-----GFPTSRFLFFVPFFLLQGGG-MDLSRVGEKILSSVRSARSLGLL--PATSDRPEV
        MQPNL FPFGSVLGNP  F+  GDL+E      F +SR  F +PF L QG G MDLS+VGEK LSSV+SA SLGLL  P+ SDRPE+
Subjt:  MQPNL-FPFGSVLGNPLAFD--GDLSE-----GFPTSRFLFFVPFFLLQGGG-MDLSRVGEKILSSVRSARSLGLL--PATSDRPEV
AT2G27900.2 CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).4.8e-1963.22Show/hide
Query:  MQPNL-FPFGSVLGNPLAFD--GDLSE-----GFPTSRFLFFVPFFLLQGGG-MDLSRVGEKILSSVRSARSLGLL--PATSDRPEV
        MQPNL FPFGSVLGNP  F+  GDL+E      F +SR  F +PF L QG G MDLS+VGEK LSSV+SA SLGLL  P+ SDRPE+
Subjt:  MQPNL-FPFGSVLGNPLAFD--GDLSE-----GFPTSRFLFFVPFFLLQGGG-MDLSRVGEKILSSVRSARSLGLL--PATSDRPEV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGCCAAATCTGTTTCCATTTGGCAGTGTTCTCGGAAACCCTTTGGCGTTTGATGGTGATTTGAGCGAAGGATTCCCGACTTCCAGGTTTCTCTTCTTTGTTCCCTT
CTTTTTGCTGCAAGGTGGTGGGATGGACTTGTCCAGGGTCGGGGAGAAGATTTTGAGCTCGGTCAGGTCAGCTAGATCGCTTGGACTTCTTCCTGCCACTTCTGATCGTC
CGGAGGTA
mRNA sequenceShow/hide mRNA sequence
ATGCAGCCAAATCTGTTTCCATTTGGCAGTGTTCTCGGAAACCCTTTGGCGTTTGATGGTGATTTGAGCGAAGGATTCCCGACTTCCAGGTTTCTCTTCTTTGTTCCCTT
CTTTTTGCTGCAAGGTGGTGGGATGGACTTGTCCAGGGTCGGGGAGAAGATTTTGAGCTCGGTCAGGTCAGCTAGATCGCTTGGACTTCTTCCTGCCACTTCTGATCGTC
CGGAGGTA
Protein sequenceShow/hide protein sequence
MQPNLFPFGSVLGNPLAFDGDLSEGFPTSRFLFFVPFFLLQGGGMDLSRVGEKILSSVRSARSLGLLPATSDRPEV