CuGenDBv2

Gene ID	MS006777
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	syndetin isoform X1
Genome location	scaffold60:326514..327739
RNA-Seq Expression	MS006777
Synteny	MS006777
Gene Ontology terms	GO:0032456 - endocytic recycling (biological process) GO:0042147 - retrograde transport, endosome to Golgi (biological process) GO:0005829 - cytosol (cellular component) GO:1990745 - EARP complex (cellular component)
InterPro domains	IPR019514 - Syndetin, C-terminal IPR040047 - Syndetin

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022152900.1 syndetin isoform X1 [Momordica charantia]

2.0e-57

100

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Query:  VQDHLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSANVKPKLQMVETFIKAYYLPETEFVHWSRAHPEYSKSQIVGLVNLVASM
        VQDHLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSANVKPKLQMVETFIKAYYLPETEFVHWSRAHPEYSKSQIVGLVNLVASM
Subjt:  VQDHLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSANVKPKLQMVETFIKAYYLPETEFVHWSRAHPEYSKSQIVGLVNLVASM

Query:  KGWKRKTRLEVLEKIE
        KGWKRKTRLEVLEKIE
Subjt:  KGWKRKTRLEVLEKIE

XP_022970284.1 syndetin-like isoform X1 [Cucurbita maxima]

4.1e-55

94.83

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Query:  VQDHLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSANVKPKLQMVETFIKAYYLPETEFVHWSRAHPEYSKSQIVGLVNLVASM
        VQD LLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSANVKPKLQMVETFIKAYYLPETE+VHW+RAHPEYSKSQ++GLVNLVASM
Subjt:  VQDHLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSANVKPKLQMVETFIKAYYLPETEFVHWSRAHPEYSKSQIVGLVNLVASM

Query:  KGWKRKTRLEVLEKIE
        KGWKRKTRLE+LEKIE
Subjt:  KGWKRKTRLEVLEKIE

XP_022970285.1 syndetin-like isoform X2 [Cucurbita maxima]

4.1e-55

94.83

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Query:  VQDHLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSANVKPKLQMVETFIKAYYLPETEFVHWSRAHPEYSKSQIVGLVNLVASM
        VQD LLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSANVKPKLQMVETFIKAYYLPETE+VHW+RAHPEYSKSQ++GLVNLVASM
Subjt:  VQDHLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSANVKPKLQMVETFIKAYYLPETEFVHWSRAHPEYSKSQIVGLVNLVASM

Query:  KGWKRKTRLEVLEKIE
        KGWKRKTRLE+LEKIE
Subjt:  KGWKRKTRLEVLEKIE

XP_038895533.1 syndetin isoform X1 [Benincasa hispida]

1.2e-54

93.1

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Query:  VQDHLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSANVKPKLQMVETFIKAYYLPETEFVHWSRAHPEYSKSQIVGLVNLVASM
        VQD LLEYGLDIVAETLIEGISR+KRCSDEGRALMSLDLQVLINGLQHFVSANV+PKLQMVETFIKAYYLPETE+VHW+RAHPEYSKSQ++GLVNLVASM
Subjt:  VQDHLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSANVKPKLQMVETFIKAYYLPETEFVHWSRAHPEYSKSQIVGLVNLVASM

Query:  KGWKRKTRLEVLEKIE
        KGWKRKTRLE+LEKIE
Subjt:  KGWKRKTRLEVLEKIE

XP_038895534.1 syndetin isoform X2 [Benincasa hispida]

1.2e-54

93.1

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Query:  VQDHLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSANVKPKLQMVETFIKAYYLPETEFVHWSRAHPEYSKSQIVGLVNLVASM
        VQD LLEYGLDIVAETLIEGISR+KRCSDEGRALMSLDLQVLINGLQHFVSANV+PKLQMVETFIKAYYLPETE+VHW+RAHPEYSKSQ++GLVNLVASM
Subjt:  VQDHLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSANVKPKLQMVETFIKAYYLPETEFVHWSRAHPEYSKSQIVGLVNLVASM

Query:  KGWKRKTRLEVLEKIE
        KGWKRKTRLE+LEKIE
Subjt:  KGWKRKTRLEVLEKIE

TrEMBL top hits

e value

%identity

Alignment

A0A6J1DF95 syndetin isoform X1

9.6e-58

100

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Query:  VQDHLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSANVKPKLQMVETFIKAYYLPETEFVHWSRAHPEYSKSQIVGLVNLVASM
        VQDHLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSANVKPKLQMVETFIKAYYLPETEFVHWSRAHPEYSKSQIVGLVNLVASM
Subjt:  VQDHLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSANVKPKLQMVETFIKAYYLPETEFVHWSRAHPEYSKSQIVGLVNLVASM

Query:  KGWKRKTRLEVLEKIE
        KGWKRKTRLEVLEKIE
Subjt:  KGWKRKTRLEVLEKIE

A0A6J1HII5 syndetin-like isoform X1

7.6e-55

93.97

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Query:  VQDHLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSANVKPKLQMVETFIKAYYLPETEFVHWSRAHPEYSKSQIVGLVNLVASM
        VQD LLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVS NVKPKLQMVETFIKAYYLPETE+VHW+RAHPEYSKSQ++GLVNLVASM
Subjt:  VQDHLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSANVKPKLQMVETFIKAYYLPETEFVHWSRAHPEYSKSQIVGLVNLVASM

Query:  KGWKRKTRLEVLEKIE
        KGWKRKTRLE+LEKIE
Subjt:  KGWKRKTRLEVLEKIE

A0A6J1HP30 syndetin-like isoform X2

7.6e-55

93.97

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Query:  VQDHLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSANVKPKLQMVETFIKAYYLPETEFVHWSRAHPEYSKSQIVGLVNLVASM
        VQD LLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVS NVKPKLQMVETFIKAYYLPETE+VHW+RAHPEYSKSQ++GLVNLVASM
Subjt:  VQDHLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSANVKPKLQMVETFIKAYYLPETEFVHWSRAHPEYSKSQIVGLVNLVASM

Query:  KGWKRKTRLEVLEKIE
        KGWKRKTRLE+LEKIE
Subjt:  KGWKRKTRLEVLEKIE

A0A6J1I2F9 syndetin-like isoform X2

2.0e-55

94.83

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Query:  VQDHLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSANVKPKLQMVETFIKAYYLPETEFVHWSRAHPEYSKSQIVGLVNLVASM
        VQD LLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSANVKPKLQMVETFIKAYYLPETE+VHW+RAHPEYSKSQ++GLVNLVASM
Subjt:  VQDHLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSANVKPKLQMVETFIKAYYLPETEFVHWSRAHPEYSKSQIVGLVNLVASM

Query:  KGWKRKTRLEVLEKIE
        KGWKRKTRLE+LEKIE
Subjt:  KGWKRKTRLEVLEKIE

A0A6J1I532 syndetin-like isoform X1

2.0e-55

94.83

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Query:  VQDHLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSANVKPKLQMVETFIKAYYLPETEFVHWSRAHPEYSKSQIVGLVNLVASM
        VQD LLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSANVKPKLQMVETFIKAYYLPETE+VHW+RAHPEYSKSQ++GLVNLVASM
Subjt:  VQDHLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSANVKPKLQMVETFIKAYYLPETEFVHWSRAHPEYSKSQIVGLVNLVASM

Query:  KGWKRKTRLEVLEKIE
        KGWKRKTRLE+LEKIE
Subjt:  KGWKRKTRLEVLEKIE

SwissProt top hits

e value

%identity

Alignment

F1LSG8 Syndetin

7.4e-15

37.07

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Query:  VQDHLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSANVKPKLQMVETFIKAYYLPETEFVHWSRAHPEYSKSQIVGLVNLVASM
        V + L E+ + +   T++EG + +K+CS+EGRALM LD Q  +  L+        P  + VE +IKAYYL E +   W + H EYS  Q+  LVN V   
Subjt:  VQDHLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSANVKPKLQMVETFIKAYYLPETEFVHWSRAHPEYSKSQIVGLVNLVASM

Query:  KGWKRKTRLEVLEKIE
            +K R ++L  I+
Subjt:  KGWKRKTRLEVLEKIE

Q5ZKV9 Syndetin

1.1e-15

38.14

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Query:  IIVQDHLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSANVKPKLQMVETFIKAYYLPETEFVHWSRAHPEYSKSQIVGLVNLVA
        +IV + L E+ + +   TL+EG + +K+CS+EGRALM LD Q  +  L+        P  + VET+IKAYYL E +   W + H EYS   +  LVN V 
Subjt:  IIVQDHLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSANVKPKLQMVETFIKAYYLPETEFVHWSRAHPEYSKSQIVGLVNLVA

Query:  SMKGWKRKTRLEVLEKIE
              +K R ++L  I+
Subjt:  SMKGWKRKTRLEVLEKIE

Q8CI71 Syndetin

1.5e-15

37.93

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Query:  VQDHLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSANVKPKLQMVETFIKAYYLPETEFVHWSRAHPEYSKSQIVGLVNLVASM
        V + L E+ + +   T++EG + +K+CS+EGRALM LD Q  +  L+        P  + VET+IKAYYL E +   W + H EYS  Q+  LVN V   
Subjt:  VQDHLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSANVKPKLQMVETFIKAYYLPETEFVHWSRAHPEYSKSQIVGLVNLVASM

Query:  KGWKRKTRLEVLEKIE
            +K R ++L  I+
Subjt:  KGWKRKTRLEVLEKIE

Q96JG6 Syndetin

1.5e-15

37.93

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Query:  VQDHLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSANVKPKLQMVETFIKAYYLPETEFVHWSRAHPEYSKSQIVGLVNLVASM
        V + L E+ + +   T++EG + +K+CS+EGRALM LD Q  +  L+        P  + VET+IKAYYL E +   W + H EYS  Q+  LVN V   
Subjt:  VQDHLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSANVKPKLQMVETFIKAYYLPETEFVHWSRAHPEYSKSQIVGLVNLVASM

Query:  KGWKRKTRLEVLEKIE
            +K R ++L  I+
Subjt:  KGWKRKTRLEVLEKIE

Arabidopsis top hits

e value

%identity

Alignment

AT2G27900.1 CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 316 Blast hits to 252 proteins in 92 species: Archae - 0; Bacteria - 2; Metazoa - 200; Fungi - 2; Plants - 68; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).

4.6e-52

81.9

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Query:  VQDHLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSANVKPKLQMVETFIKAYYLPETEFVHWSRAHPEYSKSQIVGLVNLVASM
        VQ+ LLEYG++I AE L+EG+SRIKRC+DEGR LMSLDLQVLINGLQHFV   VKPKLQ+VETFIKAYYLPETE+VHW+RAHPEY+K+Q+VGLVNLVA+M
Subjt:  VQDHLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSANVKPKLQMVETFIKAYYLPETEFVHWSRAHPEYSKSQIVGLVNLVASM

Query:  KGWKRKTRLEVLEKIE
        KGWKRKTRLEV+EKIE
Subjt:  KGWKRKTRLEVLEKIE

AT2G27900.2 CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

4.6e-52

81.9

Show/hide

Query:  VQDHLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSANVKPKLQMVETFIKAYYLPETEFVHWSRAHPEYSKSQIVGLVNLVASM
        VQ+ LLEYG++I AE L+EG+SRIKRC+DEGR LMSLDLQVLINGLQHFV   VKPKLQ+VETFIKAYYLPETE+VHW+RAHPEY+K+Q+VGLVNLVA+M
Subjt:  VQDHLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSANVKPKLQMVETFIKAYYLPETEFVHWSRAHPEYSKSQIVGLVNLVASM

Query:  KGWKRKTRLEVLEKIE
        KGWKRKTRLEV+EKIE
Subjt:  KGWKRKTRLEVLEKIE

Sequences

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CDS sequence

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ATTGATCTCAGCCAGCCTTTGAGTCTCAGGCTTCTTGATAATGCTATTGTTTGTTTCACAATCATAGTTCAAGACCACCTCTTGGAATATGGACTGGATATTGTTGCAGA
AACCCTTATTGAAGGTATATCGCGAATAAAGAGATGTTCCGACGAAGGACGGGCTCTCATGTCATTGGATCTTCAGGTTTTAATCAATGGCTTGCAACATTTTGTTTCGG
CAAATGTGAAGCCTAAGTTGCAAATGGTTGAAACCTTCATTAAGGCGTACTACCTTCCAGAAACCGAATTTGTACACTGGTCACGGGCTCACCCGGAATATAGTAAGAGC
CAAATTGTAGGTCTAGTTAACCTCGTCGCGTCGATGAAAGGGTGGAAGAGAAAAACCCGATTGGAAGTATTGGAGAAGATCGAG

mRNA sequence

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Protein sequence

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IDLSQPLSLRLLDNAIVCFTIIVQDHLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSANVKPKLQMVETFIKAYYLPETEFVHWSRAHPEYSKS
QIVGLVNLVASMKGWKRKTRLEVLEKIE

MS006777 (gene) of Bitter gourd (TR) v1 genome