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MS006785 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006785
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPolyadenylation and cleavage factor homolog 4
Genome locationscaffold60:406707..406877
RNA-Seq ExpressionMS006785
SyntenyMS006785
Gene Ontology termsGO:0006397 - mRNA processing (biological process)
GO:0005622 - intracellular (cellular component)
GO:0005488 - binding (molecular function)
InterPro domainsIPR013087 - Zinc finger C2H2-type
IPR036236 - Zinc finger C2H2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_009340948.1 PREDICTED: polyadenylation and cleavage factor homolog 4-like isoform X1 [Pyrus x bretschneideri]1.2e-0853.12Show/hide
Query:  ESVIVALYGDLDLLPNQCITCGLRFSSREKLHDHMDWH--------GREQKTSRGWFMNKPSWI
        ESVI ALYGD   LP QC TCGLRF  +E+   HMDWH         R+QK SR WF+N   W+
Subjt:  ESVIVALYGDLDLLPNQCITCGLRFSSREKLHDHMDWH--------GREQKTSRGWFMNKPSWI
XP_022158855.1 polyadenylation and cleavage factor homolog 4 isoform X1 [Momordica charantia]2.4e-0952.31Show/hide
Query:  ESVIVALYGDLDLLPNQCITCGLRFSSREKLHDHMDWH--------GREQKTSRGWFMNKPSWIA
        ESVI ALYGD   LP QC+TCGLRF S+E+  +HMDWH         R+QKTS  W+++K  W +
Subjt:  ESVIVALYGDLDLLPNQCITCGLRFSSREKLHDHMDWH--------GREQKTSRGWFMNKPSWIA
XP_022158856.1 polyadenylation and cleavage factor homolog 4 isoform X2 [Momordica charantia]2.4e-0952.31Show/hide
Query:  ESVIVALYGDLDLLPNQCITCGLRFSSREKLHDHMDWH--------GREQKTSRGWFMNKPSWIA
        ESVI ALYGD   LP QC+TCGLRF S+E+  +HMDWH         R+QKTS  W+++K  W +
Subjt:  ESVIVALYGDLDLLPNQCITCGLRFSSREKLHDHMDWH--------GREQKTSRGWFMNKPSWIA
XP_022158857.1 polyadenylation and cleavage factor homolog 4 isoform X3 [Momordica charantia]2.4e-0952.31Show/hide
Query:  ESVIVALYGDLDLLPNQCITCGLRFSSREKLHDHMDWH--------GREQKTSRGWFMNKPSWIA
        ESVI ALYGD   LP QC+TCGLRF S+E+  +HMDWH         R+QKTS  W+++K  W +
Subjt:  ESVIVALYGDLDLLPNQCITCGLRFSSREKLHDHMDWH--------GREQKTSRGWFMNKPSWIA
XP_022158858.1 polyadenylation and cleavage factor homolog 4 isoform X4 [Momordica charantia]2.4e-0952.31Show/hide
Query:  ESVIVALYGDLDLLPNQCITCGLRFSSREKLHDHMDWH--------GREQKTSRGWFMNKPSWIA
        ESVI ALYGD   LP QC+TCGLRF S+E+  +HMDWH         R+QKTS  W+++K  W +
Subjt:  ESVIVALYGDLDLLPNQCITCGLRFSSREKLHDHMDWH--------GREQKTSRGWFMNKPSWIA
TrEMBL top hitse value%identityAlignment
A0A498IWY0 CID domain-containing protein5.8e-0953.12Show/hide
Query:  ESVIVALYGDLDLLPNQCITCGLRFSSREKLHDHMDWH--------GREQKTSRGWFMNKPSWI
        ESVI ALYGD   LP QC TCGLRF  +E+   HMDWH         R+QK SR WF+N   W+
Subjt:  ESVIVALYGDLDLLPNQCITCGLRFSSREKLHDHMDWH--------GREQKTSRGWFMNKPSWI
A0A6J1DX06 polyadenylation and cleavage factor homolog 4 isoform X11.2e-0952.31Show/hide
Query:  ESVIVALYGDLDLLPNQCITCGLRFSSREKLHDHMDWH--------GREQKTSRGWFMNKPSWIA
        ESVI ALYGD   LP QC+TCGLRF S+E+  +HMDWH         R+QKTS  W+++K  W +
Subjt:  ESVIVALYGDLDLLPNQCITCGLRFSSREKLHDHMDWH--------GREQKTSRGWFMNKPSWIA
A0A6J1DX88 polyadenylation and cleavage factor homolog 4 isoform X41.2e-0952.31Show/hide
Query:  ESVIVALYGDLDLLPNQCITCGLRFSSREKLHDHMDWH--------GREQKTSRGWFMNKPSWIA
        ESVI ALYGD   LP QC+TCGLRF S+E+  +HMDWH         R+QKTS  W+++K  W +
Subjt:  ESVIVALYGDLDLLPNQCITCGLRFSSREKLHDHMDWH--------GREQKTSRGWFMNKPSWIA
A0A6J1DY97 polyadenylation and cleavage factor homolog 4 isoform X31.2e-0952.31Show/hide
Query:  ESVIVALYGDLDLLPNQCITCGLRFSSREKLHDHMDWH--------GREQKTSRGWFMNKPSWIA
        ESVI ALYGD   LP QC+TCGLRF S+E+  +HMDWH         R+QKTS  W+++K  W +
Subjt:  ESVIVALYGDLDLLPNQCITCGLRFSSREKLHDHMDWH--------GREQKTSRGWFMNKPSWIA
A0A6J1E267 polyadenylation and cleavage factor homolog 4 isoform X21.2e-0952.31Show/hide
Query:  ESVIVALYGDLDLLPNQCITCGLRFSSREKLHDHMDWH--------GREQKTSRGWFMNKPSWIA
        ESVI ALYGD   LP QC+TCGLRF S+E+  +HMDWH         R+QKTS  W+++K  W +
Subjt:  ESVIVALYGDLDLLPNQCITCGLRFSSREKLHDHMDWH--------GREQKTSRGWFMNKPSWIA
SwissProt top hitse value%identityAlignment
Q0WPF2 Polyadenylation and cleavage factor homolog 41.9e-0946.15Show/hide
Query:  ESVIVALYGDLDLLPNQCITCGLRFSSREKLHDHMDWH--------GREQKTSRGWFMNKPSWIA
        ES I ALYGD   LP QC TCGLRF  +E+   HMDWH          +Q  SR WF++   W++
Subjt:  ESVIVALYGDLDLLPNQCITCGLRFSSREKLHDHMDWH--------GREQKTSRGWFMNKPSWIA
Q9C710 Polyadenylation and cleavage factor homolog 16.2e-0840.58Show/hide
Query:  ESVIVALYGDLDLLPNQCITCGLRFSSREKLHDHMDWH-------------GREQKTSRGWFMNKPSWI
        ESVI +LY D   +P QC +CGLRF  +E+   HMDWH             G++ K SRGW  +   W+
Subjt:  ESVIVALYGDLDLLPNQCITCGLRFSSREKLHDHMDWH-------------GREQKTSRGWFMNKPSWI
Q9FIX8 Polyadenylation and cleavage factor homolog 51.1e-0739.13Show/hide
Query:  ESVIVALYGDLDLLPNQCITCGLRFSSREKLHDHMDWH-------------GREQKTSRGWFMNKPSWI
        ESVI +LY D   +P QC +CG+RF  +E+   HMDWH             G++ K SRGW  +   W+
Subjt:  ESVIVALYGDLDLLPNQCITCGLRFSSREKLHDHMDWH-------------GREQKTSRGWFMNKPSWI
Arabidopsis top hitse value%identityAlignment
AT1G66500.1 Pre-mRNA cleavage complex II4.4e-0940.58Show/hide
Query:  ESVIVALYGDLDLLPNQCITCGLRFSSREKLHDHMDWH-------------GREQKTSRGWFMNKPSWI
        ESVI +LY D   +P QC +CGLRF  +E+   HMDWH             G++ K SRGW  +   W+
Subjt:  ESVIVALYGDLDLLPNQCITCGLRFSSREKLHDHMDWH-------------GREQKTSRGWFMNKPSWI
AT4G04885.1 PCF11P-similar protein 41.4e-1046.15Show/hide
Query:  ESVIVALYGDLDLLPNQCITCGLRFSSREKLHDHMDWH--------GREQKTSRGWFMNKPSWIA
        ES I ALYGD   LP QC TCGLRF  +E+   HMDWH          +Q  SR WF++   W++
Subjt:  ESVIVALYGDLDLLPNQCITCGLRFSSREKLHDHMDWH--------GREQKTSRGWFMNKPSWIA
AT5G43620.1 Pre-mRNA cleavage complex II7.5e-0939.13Show/hide
Query:  ESVIVALYGDLDLLPNQCITCGLRFSSREKLHDHMDWH-------------GREQKTSRGWFMNKPSWI
        ESVI +LY D   +P QC +CG+RF  +E+   HMDWH             G++ K SRGW  +   W+
Subjt:  ESVIVALYGDLDLLPNQCITCGLRFSSREKLHDHMDWH-------------GREQKTSRGWFMNKPSWI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GAATCTGTGATAGTCGCGCTGTACGGTGATCTTGATCTCCTCCCCAACCAGTGTATAACATGTGGCCTTCGATTCAGCTCTCGGGAAAAGCTCCATGATCATATGGACTG
GCATGGTAGGGAGCAAAAGACTTCTCGCGGTTGGTTCATGAATAAACCCTCATGGATTGCC
mRNA sequenceShow/hide mRNA sequence
GAATCTGTGATAGTCGCGCTGTACGGTGATCTTGATCTCCTCCCCAACCAGTGTATAACATGTGGCCTTCGATTCAGCTCTCGGGAAAAGCTCCATGATCATATGGACTG
GCATGGTAGGGAGCAAAAGACTTCTCGCGGTTGGTTCATGAATAAACCCTCATGGATTGCC
Protein sequenceShow/hide protein sequence
ESVIVALYGDLDLLPNQCITCGLRFSSREKLHDHMDWHGREQKTSRGWFMNKPSWIA