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MS006786 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006786
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionpolyadenylation and cleavage factor homolog 4-like
Genome locationscaffold60:407674..407805
RNA-Seq ExpressionMS006786
SyntenyMS006786
Gene Ontology termsGO:0006397 - mRNA processing (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573202.1 Polyadenylation and cleavage factor-like 4, partial [Cucurbita argyrosperma subsp. sororia]2.8e-0550Show/hide
Query:  LPNQCMTWGLRFSSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA
        LP QCMT GLRF SQE+  +HMDWH         R+QK SR WF++   W++
Subjt:  LPNQCMTWGLRFSSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA
KAG7012378.1 Polyadenylation and cleavage factor-like 4 [Cucurbita argyrosperma subsp. argyrosperma]2.8e-0550Show/hide
Query:  LPNQCMTWGLRFSSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA
        LP QCMT GLRF SQE+  +HMDWH         R+QK SR WF++   W++
Subjt:  LPNQCMTWGLRFSSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA
XP_022954959.1 polyadenylation and cleavage factor homolog 4-like [Cucurbita moschata]2.8e-0550Show/hide
Query:  LPNQCMTWGLRFSSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA
        LP QCMT GLRF SQE+  +HMDWH         R+QK SR WF++   W++
Subjt:  LPNQCMTWGLRFSSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA
XP_022994287.1 polyadenylation and cleavage factor homolog 4-like [Cucurbita maxima]3.6e-0550Show/hide
Query:  LPNQCMTWGLRFSSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA
        LP QCMT GLRF SQE+  +HMDWH         R+QK SR WF++   W++
Subjt:  LPNQCMTWGLRFSSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA
XP_023542573.1 polyadenylation and cleavage factor homolog 4-like [Cucurbita pepo subsp. pepo]2.8e-0550Show/hide
Query:  LPNQCMTWGLRFSSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA
        LP QCMT GLRF SQE+  +HMDWH         R+QK SR WF++   W++
Subjt:  LPNQCMTWGLRFSSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA
TrEMBL top hitse value%identityAlignment
A0A6J1EYD5 polyadenylation and cleavage factor homolog 4-like isoform X12.3e-0548.08Show/hide
Query:  LPNQCMTWGLRFSSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA
        LP QCMT GLRF +QE+  +HMDWH         R+QK SR WF++ + W++
Subjt:  LPNQCMTWGLRFSSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA
A0A6J1GUI7 polyadenylation and cleavage factor homolog 4-like1.4e-0550Show/hide
Query:  LPNQCMTWGLRFSSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA
        LP QCMT GLRF SQE+  +HMDWH         R+QK SR WF++   W++
Subjt:  LPNQCMTWGLRFSSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA
A0A6J1JVD4 polyadenylation and cleavage factor homolog 4-like1.8e-0550Show/hide
Query:  LPNQCMTWGLRFSSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA
        LP QCMT GLRF SQE+  +HMDWH         R+QK SR WF++   W++
Subjt:  LPNQCMTWGLRFSSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA
A0A6J1KI02 polyadenylation and cleavage factor homolog 4-like isoform X22.3e-0548.08Show/hide
Query:  LPNQCMTWGLRFSSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA
        LP QCMT GLRF +QE+  +HMDWH         R+QK SR WF++ + W++
Subjt:  LPNQCMTWGLRFSSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA
A0A6J1KKK6 polyadenylation and cleavage factor homolog 4-like isoform X12.3e-0548.08Show/hide
Query:  LPNQCMTWGLRFSSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA
        LP QCMT GLRF +QE+  +HMDWH         R+QK SR WF++ + W++
Subjt:  LPNQCMTWGLRFSSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA
SwissProt top hitse value%identityAlignment
Q0WPF2 Polyadenylation and cleavage factor homolog 41.3e-0542.31Show/hide
Query:  LPNQCMTWGLRFSSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA
        LP QC T GLRF  QE+   HMDWH          +Q  SR WF++ + W++
Subjt:  LPNQCMTWGLRFSSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA
Arabidopsis top hitse value%identityAlignment
AT4G04885.1 PCF11P-similar protein 49.2e-0742.31Show/hide
Query:  LPNQCMTWGLRFSSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA
        LP QC T GLRF  QE+   HMDWH          +Q  SR WF++ + W++
Subjt:  LPNQCMTWGLRFSSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTCCCCAACCAATGTATGACCTGGGGCCTCCGATTCAGCTCCCAGGAAAAGCTCCATGATCATATGGACTGGCATGGTAGGGAGCAAAAGATTTCTCGTGGCTGGTTCAT
GAATAAAGCTTCATGGGTTGCT
mRNA sequenceShow/hide mRNA sequence
CTCCCCAACCAATGTATGACCTGGGGCCTCCGATTCAGCTCCCAGGAAAAGCTCCATGATCATATGGACTGGCATGGTAGGGAGCAAAAGATTTCTCGTGGCTGGTTCAT
GAATAAAGCTTCATGGGTTGCT
Protein sequenceShow/hide protein sequence
LPNQCMTWGLRFSSQEKLHDHMDWHGREQKISRGWFMNKASWVA