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MS006790 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006790
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionrecQ-mediated genome instability protein 2
Genome locationscaffold60:467148..469100
RNA-Seq ExpressionMS006790
SyntenyMS006790
Gene Ontology termsGO:0009555 - pollen development (biological process)
GO:0033045 - regulation of sister chromatid segregation (biological process)
GO:0043007 - maintenance of rDNA (biological process)
GO:2000042 - negative regulation of double-strand break repair via homologous recombination (biological process)
GO:0005829 - cytosol (cellular component)
GO:0016607 - nuclear speck (cellular component)
InterPro domainsIPR032245 - RecQ-mediated genome instability protein 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008462275.1 PREDICTED: recQ-mediated genome instability protein 2 [Cucumis melo]1.2e-5480.74Show/hide
Query:  MDYSLAALKVLCAQLTGARPTPSQHAATLGGILFQRAWLQGILVSVDKHNARLVLDDGTGTVELSLSRDFRLRPWNLGMYVMVVGAFVIRPNEPPIIGVH
        MDYSLAALK+LC QL  AR TPS   ATL GILFQRAWLQGILVSVDK N +L+LDDGTGTVELSL R+F LRPW+LGMYVMVVGAF+ R NEPP I VH
Subjt:  MDYSLAALKVLCAQLTGARPTPSQHAATLGGILFQRAWLQGILVSVDKHNARLVLDDGTGTVELSLSRDFRLRPWNLGMYVMVVGAFVIRPNEPPIIGVH

Query:  KIVDLSEFPSREAMWYLEVMEAYKMFYEPLIEEFL
        KIVDLS+ P+REAMWYLEVMEAYKMFYEPL+EEFL
Subjt:  KIVDLSEFPSREAMWYLEVMEAYKMFYEPLIEEFL

XP_022152884.1 recQ-mediated genome instability protein 2 isoform X1 [Momordica charantia]3.4e-70100Show/hide
Query:  MDYSLAALKVLCAQLTGARPTPSQHAATLGGILFQRAWLQGILVSVDKHNARLVLDDGTGTVELSLSRDFRLRPWNLGMYVMVVGAFVIRPNEPPIIGVH
        MDYSLAALKVLCAQLTGARPTPSQHAATLGGILFQRAWLQGILVSVDKHNARLVLDDGTGTVELSLSRDFRLRPWNLGMYVMVVGAFVIRPNEPPIIGVH
Subjt:  MDYSLAALKVLCAQLTGARPTPSQHAATLGGILFQRAWLQGILVSVDKHNARLVLDDGTGTVELSLSRDFRLRPWNLGMYVMVVGAFVIRPNEPPIIGVH

Query:  KIVDLSEFPSREAMWYLEVMEAYKMFYEPLIEEFL
        KIVDLSEFPSREAMWYLEVMEAYKMFYEPLIEEFL
Subjt:  KIVDLSEFPSREAMWYLEVMEAYKMFYEPLIEEFL

XP_022964663.1 uncharacterized protein LOC111464675 isoform X1 [Cucurbita moschata]4.1e-5581.34Show/hide
Query:  MDYSLAALKVLCAQLTGARPTPSQHAATLGGILFQRAWLQGILVSVDKHNARLVLDDGTGTVELSLSRDFRLRPWNLGMYVMVVGAFVIRPNEPPIIGVH
        MDYSLAALK+LC QL  AR  PS +AATLGGILFQRAWLQGILV VD+ N +L+LDDGTGTVELSLS DFR RPW+LGMYVMVVGA+V+R NEP II VH
Subjt:  MDYSLAALKVLCAQLTGARPTPSQHAATLGGILFQRAWLQGILVSVDKHNARLVLDDGTGTVELSLSRDFRLRPWNLGMYVMVVGAFVIRPNEPPIIGVH

Query:  KIVDLSEFPSREAMWYLEVMEAYKMFYEPLIEEF
        KIVDLS FP REAMWYLEVMEAYKMFYEPL+EEF
Subjt:  KIVDLSEFPSREAMWYLEVMEAYKMFYEPLIEEF

XP_022970350.1 uncharacterized protein LOC111469342 [Cucurbita maxima]4.1e-5580.6Show/hide
Query:  MDYSLAALKVLCAQLTGARPTPSQHAATLGGILFQRAWLQGILVSVDKHNARLVLDDGTGTVELSLSRDFRLRPWNLGMYVMVVGAFVIRPNEPPIIGVH
        MDY+LAALK+LC QL  AR  PS +AATLGGILFQRAWLQGILV VD+ N +L+LDDGTGTVELSLS DFR RPW+LGMYVMVVGA+V+R NEP II VH
Subjt:  MDYSLAALKVLCAQLTGARPTPSQHAATLGGILFQRAWLQGILVSVDKHNARLVLDDGTGTVELSLSRDFRLRPWNLGMYVMVVGAFVIRPNEPPIIGVH

Query:  KIVDLSEFPSREAMWYLEVMEAYKMFYEPLIEEF
        KIVDLS+FP REAMWYLEVMEAYKMFYEPL+EEF
Subjt:  KIVDLSEFPSREAMWYLEVMEAYKMFYEPLIEEF

XP_038894076.1 uncharacterized protein LOC120082820 [Benincasa hispida]1.9e-5784.33Show/hide
Query:  MDYSLAALKVLCAQLTGARPTPSQHAATLGGILFQRAWLQGILVSVDKHNARLVLDDGTGTVELSLSRDFRLRPWNLGMYVMVVGAFVIRPNEPPIIGVH
        MDYSLAALK+LC QL  AR +P+ +AATLGGILFQRAWLQG LVSVDK NA+L+LDDGTGTVELSLSRDFRLRPW LGMYVMVVGAFV R NEPP+I VH
Subjt:  MDYSLAALKVLCAQLTGARPTPSQHAATLGGILFQRAWLQGILVSVDKHNARLVLDDGTGTVELSLSRDFRLRPWNLGMYVMVVGAFVIRPNEPPIIGVH

Query:  KIVDLSEFPSREAMWYLEVMEAYKMFYEPLIEEF
        KIVDLS+FP REAMWYLEV+EAYKMFYEPLIEEF
Subjt:  KIVDLSEFPSREAMWYLEVMEAYKMFYEPLIEEF

TrEMBL top hitse value%identityAlignment
A0A1S3CGI5 recQ-mediated genome instability protein 25.7e-5580.74Show/hide
Query:  MDYSLAALKVLCAQLTGARPTPSQHAATLGGILFQRAWLQGILVSVDKHNARLVLDDGTGTVELSLSRDFRLRPWNLGMYVMVVGAFVIRPNEPPIIGVH
        MDYSLAALK+LC QL  AR TPS   ATL GILFQRAWLQGILVSVDK N +L+LDDGTGTVELSL R+F LRPW+LGMYVMVVGAF+ R NEPP I VH
Subjt:  MDYSLAALKVLCAQLTGARPTPSQHAATLGGILFQRAWLQGILVSVDKHNARLVLDDGTGTVELSLSRDFRLRPWNLGMYVMVVGAFVIRPNEPPIIGVH

Query:  KIVDLSEFPSREAMWYLEVMEAYKMFYEPLIEEFL
        KIVDLS+ P+REAMWYLEVMEAYKMFYEPL+EEFL
Subjt:  KIVDLSEFPSREAMWYLEVMEAYKMFYEPLIEEFL

A0A5A7UD07 RecQ-mediated genome instability protein 25.7e-5580.74Show/hide
Query:  MDYSLAALKVLCAQLTGARPTPSQHAATLGGILFQRAWLQGILVSVDKHNARLVLDDGTGTVELSLSRDFRLRPWNLGMYVMVVGAFVIRPNEPPIIGVH
        MDYSLAALK+LC QL  AR TPS   ATL GILFQRAWLQGILVSVDK N +L+LDDGTGTVELSL R+F LRPW+LGMYVMVVGAF+ R NEPP I VH
Subjt:  MDYSLAALKVLCAQLTGARPTPSQHAATLGGILFQRAWLQGILVSVDKHNARLVLDDGTGTVELSLSRDFRLRPWNLGMYVMVVGAFVIRPNEPPIIGVH

Query:  KIVDLSEFPSREAMWYLEVMEAYKMFYEPLIEEFL
        KIVDLS+ P+REAMWYLEVMEAYKMFYEPL+EEFL
Subjt:  KIVDLSEFPSREAMWYLEVMEAYKMFYEPLIEEFL

A0A6J1DF83 recQ-mediated genome instability protein 2 isoform X11.7e-70100Show/hide
Query:  MDYSLAALKVLCAQLTGARPTPSQHAATLGGILFQRAWLQGILVSVDKHNARLVLDDGTGTVELSLSRDFRLRPWNLGMYVMVVGAFVIRPNEPPIIGVH
        MDYSLAALKVLCAQLTGARPTPSQHAATLGGILFQRAWLQGILVSVDKHNARLVLDDGTGTVELSLSRDFRLRPWNLGMYVMVVGAFVIRPNEPPIIGVH
Subjt:  MDYSLAALKVLCAQLTGARPTPSQHAATLGGILFQRAWLQGILVSVDKHNARLVLDDGTGTVELSLSRDFRLRPWNLGMYVMVVGAFVIRPNEPPIIGVH

Query:  KIVDLSEFPSREAMWYLEVMEAYKMFYEPLIEEFL
        KIVDLSEFPSREAMWYLEVMEAYKMFYEPLIEEFL
Subjt:  KIVDLSEFPSREAMWYLEVMEAYKMFYEPLIEEFL

A0A6J1HLJ4 uncharacterized protein LOC111464675 isoform X12.0e-5581.34Show/hide
Query:  MDYSLAALKVLCAQLTGARPTPSQHAATLGGILFQRAWLQGILVSVDKHNARLVLDDGTGTVELSLSRDFRLRPWNLGMYVMVVGAFVIRPNEPPIIGVH
        MDYSLAALK+LC QL  AR  PS +AATLGGILFQRAWLQGILV VD+ N +L+LDDGTGTVELSLS DFR RPW+LGMYVMVVGA+V+R NEP II VH
Subjt:  MDYSLAALKVLCAQLTGARPTPSQHAATLGGILFQRAWLQGILVSVDKHNARLVLDDGTGTVELSLSRDFRLRPWNLGMYVMVVGAFVIRPNEPPIIGVH

Query:  KIVDLSEFPSREAMWYLEVMEAYKMFYEPLIEEF
        KIVDLS FP REAMWYLEVMEAYKMFYEPL+EEF
Subjt:  KIVDLSEFPSREAMWYLEVMEAYKMFYEPLIEEF

A0A6J1I0C8 uncharacterized protein LOC1114693422.0e-5580.6Show/hide
Query:  MDYSLAALKVLCAQLTGARPTPSQHAATLGGILFQRAWLQGILVSVDKHNARLVLDDGTGTVELSLSRDFRLRPWNLGMYVMVVGAFVIRPNEPPIIGVH
        MDY+LAALK+LC QL  AR  PS +AATLGGILFQRAWLQGILV VD+ N +L+LDDGTGTVELSLS DFR RPW+LGMYVMVVGA+V+R NEP II VH
Subjt:  MDYSLAALKVLCAQLTGARPTPSQHAATLGGILFQRAWLQGILVSVDKHNARLVLDDGTGTVELSLSRDFRLRPWNLGMYVMVVGAFVIRPNEPPIIGVH

Query:  KIVDLSEFPSREAMWYLEVMEAYKMFYEPLIEEF
        KIVDLS+FP REAMWYLEVMEAYKMFYEPL+EEF
Subjt:  KIVDLSEFPSREAMWYLEVMEAYKMFYEPLIEEF

SwissProt top hitse value%identityAlignment
A5PJU7 RecQ-mediated genome instability protein 23.4e-0437.36Show/hide
Query:  WLQGILVSVDKHNARLVLDDGTGTVELSLSRDFRLRPWNL-GMYVMVVGAFVIRPNEPPIIGVHKIVDLSEFPSREAMWYLEVMEAYKMFY
        W+QG +V      ARL    G+ +V   L R  R RP  + G YVMV+G       EP +  V K+ DLS+ P  E++W LEV + ++  Y
Subjt:  WLQGILVSVDKHNARLVLDDGTGTVELSLSRDFRLRPWNL-GMYVMVVGAFVIRPNEPPIIGVHKIVDLSEFPSREAMWYLEVMEAYKMFY

Q3UPE3 RecQ-mediated genome instability protein 25.2e-0535.43Show/hide
Query:  LAALKVLCAQL-TGARPTP-----SQHAATLGGILFQRAWLQGILVSVDKHNARLVLDDGTGTVELSLSRDFRLRPWNL-GMYVMVVGAFVIRPNEPPII
        L  LKVL  QL   A   P     S+ A     +     W+QG +++ +   ARL    G  +V   L R  R RP  L G YVMV+G       EP + 
Subjt:  LAALKVLCAQL-TGARPTP-----SQHAATLGGILFQRAWLQGILVSVDKHNARLVLDDGTGTVELSLSRDFRLRPWNL-GMYVMVVGAFVIRPNEPPII

Query:  GVHKIVDLSEFPSREAMWYLEVMEAYK
         V K+ DLS+ P  E+MW LEV + ++
Subjt:  GVHKIVDLSEFPSREAMWYLEVMEAYK

Q5ZM20 RecQ-mediated genome instability protein 22.3e-0533.59Show/hide
Query:  LKVLCAQL------TGARPTPSQHAATLGGILFQRAWLQGILVSVDKHNARLV-LDDGTGTVELSLSRDF-RLRP-WNLGMYVMVVGAFVIRPNEP-PII
        LKVL AQL       G     S+       +  +  W+QG ++ V++       L DG+G   +    D  R RP  + G YVMV+G  ++R   P P++
Subjt:  LKVLCAQL------TGARPTPSQHAATLGGILFQRAWLQGILVSVDKHNARLV-LDDGTGTVELSLSRDF-RLRP-WNLGMYVMVVGAFVIRPNEP-PII

Query:  GVHKIVDLSEFPSREAMWYLEVMEAYKM
           K+ DLSE P  E MW LEV E +++
Subjt:  GVHKIVDLSEFPSREAMWYLEVMEAYKM

Q96E14 RecQ-mediated genome instability protein 22.8e-0637.9Show/hide
Query:  LKVLCAQL-TGARPTP-----SQHAATLGGILFQRAWLQGILVSVDKHNARLVLDDGTGTVELSLSRDFRLRPWNL-GMYVMVVGAFVIRPNEPPIIGVH
        LKVL  QL   A   P     S+ AA  G +     W+QG +V  D+  ARL    G  +V   L R  R RP  + G YVMV+G       EP +  V 
Subjt:  LKVLCAQL-TGARPTP-----SQHAATLGGILFQRAWLQGILVSVDKHNARLVLDDGTGTVELSLSRDFRLRPWNL-GMYVMVVGAFVIRPNEPPIIGVH

Query:  KIVDLSEFPSREAMWYLEVMEAYK
        K+ DLS+ P  E+MW LEV + ++
Subjt:  KIVDLSEFPSREAMWYLEVMEAYK

Arabidopsis top hitse value%identityAlignment
AT1G08390.1 unknown protein1.3e-4665.44Show/hide
Query:  MDYSLAALKVLCAQLTGARPTPSQHAATLGGILFQRAWLQGILV--SVDKHNARLVLDDGTGTVELSLSRDFRLRPWNLGMYVMVVGAFVIRPNEPPIIG
        MDYSLAA+K+LC+QL  A+PTPSQ+AA+LGG+LFQRAWLQG+LV  S    +  LVLDDGTG +EL L+ DF LR W  GMYVMVVG + +R  + P++ 
Subjt:  MDYSLAALKVLCAQLTGARPTPSQHAATLGGILFQRAWLQGILV--SVDKHNARLVLDDGTGTVELSLSRDFRLRPWNLGMYVMVVGAFVIRPNEPPIIG

Query:  VHKIVDLSEFPSREAMWYLEVMEAYKMFYEPLIEEF
        VHK+VDLS  P REAMWYLEVM+AY++FYEPLI+EF
Subjt:  VHKIVDLSEFPSREAMWYLEVMEAYKMFYEPLIEEF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACTACAGCTTAGCAGCGCTGAAGGTTCTGTGCGCGCAGCTCACCGGCGCCCGCCCAACGCCGTCGCAGCACGCCGCCACTCTCGGCGGCATTCTCTTCCAGCGCGC
CTGGCTTCAGGGGATTTTGGTCTCCGTCGACAAACACAACGCCAGATTGGTTCTCGACGACGGCACCGGCACCGTCGAGCTCTCCCTCTCTCGCGATTTCCGCCTCCGCC
CTTGGAACCTCGGGATGTATGTGATGGTTGTTGGAGCATTTGTCATCCGGCCGAATGAGCCGCCGATTATTGGGGTCCACAAGATTGTTGATCTTTCAGAGTTTCCTAGT
CGGGAGGCGATGTGGTACCTCGAAGTCATGGAAGCATACAAAATGTTCTATGAACCCCTGATTGAAGAATTTTTG
mRNA sequenceShow/hide mRNA sequence
ATGGACTACAGCTTAGCAGCGCTGAAGGTTCTGTGCGCGCAGCTCACCGGCGCCCGCCCAACGCCGTCGCAGCACGCCGCCACTCTCGGCGGCATTCTCTTCCAGCGCGC
CTGGCTTCAGGGGATTTTGGTCTCCGTCGACAAACACAACGCCAGATTGGTTCTCGACGACGGCACCGGCACCGTCGAGCTCTCCCTCTCTCGCGATTTCCGCCTCCGCC
CTTGGAACCTCGGGATGTATGTGATGGTTGTTGGAGCATTTGTCATCCGGCCGAATGAGCCGCCGATTATTGGGGTCCACAAGATTGTTGATCTTTCAGAGTTTCCTAGT
CGGGAGGCGATGTGGTACCTCGAAGTCATGGAAGCATACAAAATGTTCTATGAACCCCTGATTGAAGAATTTTTG
Protein sequenceShow/hide protein sequence
MDYSLAALKVLCAQLTGARPTPSQHAATLGGILFQRAWLQGILVSVDKHNARLVLDDGTGTVELSLSRDFRLRPWNLGMYVMVVGAFVIRPNEPPIIGVHKIVDLSEFPS
REAMWYLEVMEAYKMFYEPLIEEFL