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MS006793 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006793
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCyclin-dependent protein kinase inhibitor SMR2
Genome locationscaffold60:489435..489755
RNA-Seq ExpressionMS006793
SyntenyMS006793
Gene Ontology termsGO:0032875 - regulation of DNA endoreduplication (biological process)
InterPro domainsIPR040389 - Cyclin-dependent protein kinase inhibitor SMR


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052125.1 cyclin-dependent protein kinase inhibitor SMR2 [Cucumis melo var. makuwa]1.1e-2665.77Show/hide
Query:  MSEFHNSDHQKSPETQKPPEEGDRTEEDGGG----GADGGGGEIRCRTPTSLRHRIPTTRSCPPTPRKRKVVSKRKLPDQSFFEATGSGEVESLFGLFYR
        MS+ H SD +K  ET K  E GDR+ E+G G     A+   GE  CRTPTSLRHRIP  +SCP TPRK++V  KRK+ DQSFFEATG GEVESLFGLFYR
Subjt:  MSEFHNSDHQKSPETQKPPEEGDRTEEDGGG----GADGGGGEIRCRTPTSLRHRIPTTRSCPPTPRKRKVVSKRKLPDQSFFEATGSGEVESLFGLFYR

Query:  VSSAKRRCTSV
        VSS+KRRCTSV
Subjt:  VSSAKRRCTSV

KAE8652786.1 hypothetical protein Csa_022878 [Cucumis sativus]2.5e-1558.24Show/hide
Query:  MSEFHNSDHQKSPETQKPPEEGDRTEEDGGG----GADGGGGEIRCRTPTSLRHRIPTTRSCPPTPRKRKVVSKRKLPDQSFFEATGSGEV
        MS+FH SD QK  E  + PE GDR+ E+G G     A+   GE  CRTPTS +HRIP  +SCP TPRK++VV KRK  DQSFFEATG GE+
Subjt:  MSEFHNSDHQKSPETQKPPEEGDRTEEDGGG----GADGGGGEIRCRTPTSLRHRIPTTRSCPPTPRKRKVVSKRKLPDQSFFEATGSGEV

KAG6583595.1 hypothetical protein SDJN03_19527, partial [Cucurbita argyrosperma subsp. sororia]1.1e-3175.93Show/hide
Query:  MSEFHNSDHQKSPETQKPPEEGDRT-EEDGGGGADGGGGEIRCRTPTSLRHRIPTTRSCPPTPRKRKVVSKRKLPDQSFFEATGSGEVESLFGLFYRVSS
        MS+FH SDHQK  E  KPPEEGDR+ EEDGGG A   GGE  CRTPTSLRHRIPT RS P TPRKRKV SKRK  DQSFFE TG GEVESLF LFYRVSS
Subjt:  MSEFHNSDHQKSPETQKPPEEGDRT-EEDGGGGADGGGGEIRCRTPTSLRHRIPTTRSCPPTPRKRKVVSKRKLPDQSFFEATGSGEVESLFGLFYRVSS

Query:  AKRRCTSV
        AKRR T++
Subjt:  AKRRCTSV

KAG6586014.1 hypothetical protein SDJN03_18747, partial [Cucurbita argyrosperma subsp. sororia]1.2e-3071.17Show/hide
Query:  MSEFHNSDHQKSPETQKPPEEGDRTEEDGGGGA----DGGGGEIRCRTPTSLRHRIPTTRSCPPTPRKRKVVSKRKLPDQSFFEATGSGEVESLFGLFYR
        MSEF NSDHQKS E QKP EE DR++E+ GG A    + GGGE  CRTP+SL+HRIP  RSCP TPRK+KVVSKRK  DQSFFE+T   EVESLFGLFYR
Subjt:  MSEFHNSDHQKSPETQKPPEEGDRTEEDGGGGA----DGGGGEIRCRTPTSLRHRIPTTRSCPPTPRKRKVVSKRKLPDQSFFEATGSGEVESLFGLFYR

Query:  VSSAKRRCTSV
        VSS KRRCTS+
Subjt:  VSSAKRRCTSV

KAG7019295.1 hypothetical protein SDJN02_18255, partial [Cucurbita argyrosperma subsp. argyrosperma]7.2e-3174.07Show/hide
Query:  MSEFHNSDHQKSPETQKPPEEGDRT-EEDGGGGADGGGGEIRCRTPTSLRHRIPTTRSCPPTPRKRKVVSKRKLPDQSFFEATGSGEVESLFGLFYRVSS
        MS+FH SDHQK  E  KPPEEGDR+ EEDGGG A    GE  CRTPTSLRHRIPT RS P TPRKRK+ SKRK  DQSFFE TG GEVESLF LFYRVSS
Subjt:  MSEFHNSDHQKSPETQKPPEEGDRT-EEDGGGGADGGGGEIRCRTPTSLRHRIPTTRSCPPTPRKRKVVSKRKLPDQSFFEATGSGEVESLFGLFYRVSS

Query:  AKRRCTSV
        AKRR T++
Subjt:  AKRRCTSV

TrEMBL top hitse value%identityAlignment
A0A0A0LV74 Uncharacterized protein2.7e-1558.89Show/hide
Query:  MSEFHNSDHQKSPETQKPPEEGDRTEEDGGG----GADGGGGEIRCRTPTSLRHRIPTTRSCPPTPRKRKVVSKRKLPDQSFFEATGSGE
        MS+FH SD QK  E  + PE GDR+ E+G G     A+   GE  CRTPTS +HRIP  +SCP TPRK++VV KRK  DQSFFEATG GE
Subjt:  MSEFHNSDHQKSPETQKPPEEGDRTEEDGGG----GADGGGGEIRCRTPTSLRHRIPTTRSCPPTPRKRKVVSKRKLPDQSFFEATGSGE

A0A5D3BHE9 Cyclin-dependent protein kinase inhibitor SMR25.2e-2765.77Show/hide
Query:  MSEFHNSDHQKSPETQKPPEEGDRTEEDGGG----GADGGGGEIRCRTPTSLRHRIPTTRSCPPTPRKRKVVSKRKLPDQSFFEATGSGEVESLFGLFYR
        MS+ H SD +K  ET K  E GDR+ E+G G     A+   GE  CRTPTSLRHRIP  +SCP TPRK++V  KRK+ DQSFFEATG GEVESLFGLFYR
Subjt:  MSEFHNSDHQKSPETQKPPEEGDRTEEDGGG----GADGGGGEIRCRTPTSLRHRIPTTRSCPPTPRKRKVVSKRKLPDQSFFEATGSGEVESLFGLFYR

Query:  VSSAKRRCTSV
        VSS+KRRCTSV
Subjt:  VSSAKRRCTSV

A0A6P5XQ34 cyclin-dependent protein kinase inhibitor SMR2-like4.9e-0943.64Show/hide
Query:  QKSPETQKPPEEGDRTEEDGGGGADGGG------GEIRCRTPTSLRHRIPTTRSCPPTPRKRKVVS--KRKLPDQSFFEATGSGEVESLF-----GLFYR
        Q+  + QK  E G   ++  GGG +  G      GE  C+TPTS  H+IPT +SCPPTP+K+  V+  KRKL +  FFE T S EVES F          
Subjt:  QKSPETQKPPEEGDRTEEDGGGGADGGG------GEIRCRTPTSLRHRIPTTRSCPPTPRKRKVVS--KRKLPDQSFFEATGSGEVESLF-----GLFYR

Query:  VSSAKRRCTS
          S+KRRC S
Subjt:  VSSAKRRCTS

A0A7N2QXB7 Uncharacterized protein6.4e-0947.12Show/hide
Query:  KSPETQKPPEEGDRTEEDGGGGADGGGGEIRCRTPTSLRHRIPTTRSCPPTPRK--RKVVSKRKLPDQSFFEATGSGEVESLFGLFY---RVSS--AKRR
        K P+ Q P +  D  +E+G            CRTPTS  H+IP T+SCPPTPRK  R  V KRK  D  FFE T   E+ES F   +   RV+S   KRR
Subjt:  KSPETQKPPEEGDRTEEDGGGGADGGGGEIRCRTPTSLRHRIPTTRSCPPTPRK--RKVVSKRKLPDQSFFEATGSGEVESLFGLFY---RVSS--AKRR

Query:  CTSV
        CTSV
Subjt:  CTSV

W9S3U9 Uncharacterized protein2.2e-0952.86Show/hide
Query:  CRTPTSLRHRIPTTRSCPPTPRK----RKVVSKRKLPDQSFFEATGSGEVESLFGLFYRVSSAKRRCTSV
        C+TPTS   +IPTT+SCPPTPRK    R  + KRK  +  FFE+TG  EVES F   ++ S  K+RC SV
Subjt:  CRTPTSLRHRIPTTRSCPPTPRK----RKVVSKRKLPDQSFFEATGSGEVESLFGLFYRVSSAKRRCTSV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGAATTTCACAATTCCGATCACCAAAAGTCACCGGAGACCCAAAAGCCACCGGAAGAGGGTGATCGGACCGAGGAGGACGGTGGAGGAGGAGCGGATGGTGGCGG
TGGAGAGATCAGGTGTCGGACTCCGACATCTCTCCGACACCGAATACCGACCACACGGAGCTGCCCACCGACGCCGAGGAAGCGGAAAGTAGTGAGCAAGAGGAAACTTC
CCGACCAAAGCTTCTTTGAAGCCACCGGAAGTGGAGAGGTAGAGTCCTTGTTTGGCTTGTTTTATAGGGTTTCTTCTGCCAAAAGAAGATGCACCAGTGTA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGAATTTCACAATTCCGATCACCAAAAGTCACCGGAGACCCAAAAGCCACCGGAAGAGGGTGATCGGACCGAGGAGGACGGTGGAGGAGGAGCGGATGGTGGCGG
TGGAGAGATCAGGTGTCGGACTCCGACATCTCTCCGACACCGAATACCGACCACACGGAGCTGCCCACCGACGCCGAGGAAGCGGAAAGTAGTGAGCAAGAGGAAACTTC
CCGACCAAAGCTTCTTTGAAGCCACCGGAAGTGGAGAGGTAGAGTCCTTGTTTGGCTTGTTTTATAGGGTTTCTTCTGCCAAAAGAAGATGCACCAGTGTA
Protein sequenceShow/hide protein sequence
MSEFHNSDHQKSPETQKPPEEGDRTEEDGGGGADGGGGEIRCRTPTSLRHRIPTTRSCPPTPRKRKVVSKRKLPDQSFFEATGSGEVESLFGLFYRVSSAKRRCTSV