CuGenDBv2

Gene ID	MS006796
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Cyclin-dependent kinases regulatory subunit
Genome location	scaffold60:510893..511411
RNA-Seq Expression	MS006796
Synteny	MS006796
Gene Ontology terms	GO:0007346 - regulation of mitotic cell cycle (biological process) GO:0045737 - positive regulation of cyclin-dependent protein serine/threonine kinase activity (biological process) GO:0051301 - cell division (biological process) GO:0000307 - cyclin-dependent protein kinase holoenzyme complex (cellular component) GO:0019005 - SCF ubiquitin ligase complex (cellular component) GO:0016301 - kinase activity (molecular function) GO:0019901 - protein kinase binding (molecular function) GO:0042393 - histone binding (molecular function) GO:0043130 - ubiquitin binding (molecular function) GO:0061575 - cyclin-dependent protein serine/threonine kinase activator activity (molecular function)
InterPro domains	IPR000789 - Cyclin-dependent kinase, regulatory subunit IPR036858 - Cyclin-dependent kinase, regulatory subunit superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAF5186146.1 Cyclin-dependent kinases regulatory subunit [Thalictrum thalictroides]

5.6e-42

97.7

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Query:  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQIMAK
        MGQIQYSEKYFDDT+EYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQI+AK
Subjt:  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQIMAK

OMO84425.1 Cyclin-dependent kinase, regulatory subunit [Corchorus capsularis]

2.8e-41

96.51

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Query:  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQIMA
        MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQ+++
Subjt:  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQIMA

OVA17930.1 Cyclin-dependent kinase [Macleaya cordata]

1.6e-41

97.7

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Query:  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQIMAK
        MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQE QAQQI+AK
Subjt:  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQIMAK

PIA54927.1 hypothetical protein AQUCO_00901082v1 [Aquilegia coerulea]

2.5e-42

97.7

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Query:  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQIMAK
        MGQIQYSEKYFDDTYEYRHV+LPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQI+AK
Subjt:  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQIMAK

XP_022152941.1 cyclin-dependent kinases regulatory subunit 1 [Momordica charantia]

8.7e-43

100

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Query:  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQIMAK
        MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQIMAK
Subjt:  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQIMAK

TrEMBL top hits

e value

%identity

Alignment

A0A1R3IPB4 Cyclin-dependent kinases regulatory subunit

1.4e-41

96.51

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Query:  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQIMA
        MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQ+++
Subjt:  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQIMA

A0A200R5F3 Cyclin-dependent kinases regulatory subunit

8.0e-42

97.7

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Query:  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQIMAK
        MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQE QAQQI+AK
Subjt:  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQIMAK

A0A2G5EH85 Cyclin-dependent kinases regulatory subunit

1.2e-42

97.7

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Query:  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQIMAK
        MGQIQYSEKYFDDTYEYRHV+LPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQI+AK
Subjt:  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQIMAK

A0A6J1DJ87 Cyclin-dependent kinases regulatory subunit

4.2e-43

100

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Query:  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQIMAK
        MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQIMAK
Subjt:  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQIMAK

A0A7J6VM11 Cyclin-dependent kinases regulatory subunit

2.7e-42

97.7

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Query:  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQIMAK
        MGQIQYSEKYFDDT+EYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQI+AK
Subjt:  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQIMAK

SwissProt top hits

e value

%identity

Alignment

A2XCH8 Cyclin-dependent kinases regulatory subunit 1

1.1e-40

96.3

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Query:  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQA
        MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLN+QQQQE  A
Subjt:  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQA

O23249 Cyclin-dependent kinases regulatory subunit 1

2.4e-43

93.1

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Query:  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQIMAK
        MGQIQYSEKYFDDT+EYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYA+HRPEPHIMLFRRPLNYQQQQENQAQ ++ K
Subjt:  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQIMAK

P55933 Probable cyclin-dependent kinases regulatory subunit

2.2e-28

80.3

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Query:  IQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRR
        IQYSEKY+DD +EYRHV+LPP+VAK +PKNRLLSE EWR +GVQQS+GWVHYA+HRPEPHI+LFRR
Subjt:  IQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRR

Q6PS57 Cyclin-dependent kinases regulatory subunit 1

1.1e-40

96.3

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Query:  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQA
        MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLN+QQQQE  A
Subjt:  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQA

Q9SJJ5 Cyclin-dependent kinases regulatory subunit 2

1.8e-38

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Query:  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQ
        MGQIQYS+KYFDDT+EYRHVVLPPEVAKLLPKNR+LSE+EWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQ+ + Q
Subjt:  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQ

Arabidopsis top hits

e value

%identity

Alignment

AT2G27960.1 cyclin-dependent kinase-subunit 1

1.7e-44

93.1

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Query:  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQIMAK
        MGQIQYSEKYFDDT+EYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYA+HRPEPHIMLFRRPLNYQQQQENQAQ ++ K
Subjt:  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQIMAK

AT2G27970.1 CDK-subunit 2

1.3e-39

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Query:  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQ
        MGQIQYS+KYFDDT+EYRHVVLPPEVAKLLPKNR+LSE+EWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQ+ + Q
Subjt:  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQ

Sequences

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CDS sequence

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ATGGGCCAGATCCAGTACTCCGAGAAGTATTTCGACGATACCTATGAATACAGGCATGTGGTGCTTCCCCCGGAAGTCGCTAAACTTCTCCCCAAGAATCGCCTTCTTTC
CGAAAACGAATGGCGGGCGATCGGGGTTCAGCAGAGCCGGGGATGGGTCCACTACGCAATCCATCGCCCAGAGCCGCACATTATGCTGTTCAGGAGGCCACTCAACTATC
AGCAGCAGCAGGAGAATCAAGCGCAGCAGATTATGGCCAAG

mRNA sequence

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Protein sequence

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MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQIMAK

MS006796 (gene) of Bitter gourd (TR) v1 genome