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MS006811 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006811
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold60:694655..694955
RNA-Seq ExpressionMS006811
SyntenyMS006811
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]5.7e-0637.5Show/hide
Query:  WVPPTADSLKLNTDAACNETIQGIGVCFIFRDSSGTICATGSFFHPFYLSPL--ELLAIIQGLEQTQTLNCRKIMVESDSLQAISLFQ
        W+PP   ++K+N+DAAC  T  G+G+  I RD  G +    S F P  L+PL  E+  I++ L+   + +  +++VESD  +AI L Q
Subjt:  WVPPTADSLKLNTDAACNETIQGIGVCFIFRDSSGTICATGSFFHPFYLSPL--ELLAIIQGLEQTQTLNCRKIMVESDSLQAISLFQ
XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]2.6e-0640.22Show/hide
Query:  WVPPTADSLKLNTDAACNETIQGIGVCFIFRDSSGTICATGS--FFHPFYLSPLELLAIIQGLEQTQTLNCRKIMVESDSLQAISLFQQKSK
        W PPT++S KLNTDAA        G+ +I RD  G +  TG         ++ LE++AI +GL   +  +CR I +ESDSL+AI L  +  K
Subjt:  WVPPTADSLKLNTDAACNETIQGIGVCFIFRDSSGTICATGS--FFHPFYLSPLELLAIIQGLEQTQTLNCRKIMVESDSLQAISLFQQKSK
XP_022154991.1 uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]2.6e-0640.22Show/hide
Query:  WVPPTADSLKLNTDAACNETIQGIGVCFIFRDSSGTICATGS--FFHPFYLSPLELLAIIQGLEQTQTLNCRKIMVESDSLQAISLFQQKSK
        W PPT++S KLNTDAA        G+ +I RD  G +  TG         ++ LE++AI +GL   +  +CR I +ESDSL+AI L  +  K
Subjt:  WVPPTADSLKLNTDAACNETIQGIGVCFIFRDSSGTICATGS--FFHPFYLSPLELLAIIQGLEQTQTLNCRKIMVESDSLQAISLFQQKSK
XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]4.3e-0644.44Show/hide
Query:  WVPPTADSLKLNTDAACNETIQGIGVCFIFRDSSGTICATGSFFHPFYLSPL--ELLAIIQGLEQTQTLNCRKIMVESDSLQAISLFQQK
        W P ++ SLKLNTDAAC       G   I RDSS ++ A  S   PF LSPL  E+  I++GL+     N   + VESDSL AI L + +
Subjt:  WVPPTADSLKLNTDAACNETIQGIGVCFIFRDSSGTICATGSFFHPFYLSPL--ELLAIIQGLEQTQTLNCRKIMVESDSLQAISLFQQK
XP_024178556.2 uncharacterized protein LOC112184522 [Rosa chinensis]2.2e-0536.84Show/hide
Query:  WVPPTADSLKLNTDAACNETIQGIGVCFIFRDSSGTICATGSFFHPFYLSPL--ELLAIIQGLEQTQTLNCRKIMVESDSLQAISLFQQKSKSLA
        W PP   +LKLN D A   +IQ  G   + R+  G   A  S+   F LSPL  ELLA+  GL+    +N  K++VE+D L A+      ++ L+
Subjt:  WVPPTADSLKLNTDAACNETIQGIGVCFIFRDSSGTICATGSFFHPFYLSPL--ELLAIIQGLEQTQTLNCRKIMVESDSLQAISLFQQKSKSLA
TrEMBL top hitse value%identityAlignment
A0A6J1BQ49 uncharacterized protein LOC1110047862.8e-0637.5Show/hide
Query:  WVPPTADSLKLNTDAACNETIQGIGVCFIFRDSSGTICATGSFFHPFYLSPL--ELLAIIQGLEQTQTLNCRKIMVESDSLQAISLFQ
        W+PP   ++K+N+DAAC  T  G+G+  I RD  G +    S F P  L+PL  E+  I++ L+   + +  +++VESD  +AI L Q
Subjt:  WVPPTADSLKLNTDAACNETIQGIGVCFIFRDSSGTICATGSFFHPFYLSPL--ELLAIIQGLEQTQTLNCRKIMVESDSLQAISLFQ
A0A6J1DL64 uncharacterized protein LOC111022134 isoform X11.2e-0640.22Show/hide
Query:  WVPPTADSLKLNTDAACNETIQGIGVCFIFRDSSGTICATGS--FFHPFYLSPLELLAIIQGLEQTQTLNCRKIMVESDSLQAISLFQQKSK
        W PPT++S KLNTDAA        G+ +I RD  G +  TG         ++ LE++AI +GL   +  +CR I +ESDSL+AI L  +  K
Subjt:  WVPPTADSLKLNTDAACNETIQGIGVCFIFRDSSGTICATGS--FFHPFYLSPLELLAIIQGLEQTQTLNCRKIMVESDSLQAISLFQQKSK
A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X21.2e-0640.22Show/hide
Query:  WVPPTADSLKLNTDAACNETIQGIGVCFIFRDSSGTICATGS--FFHPFYLSPLELLAIIQGLEQTQTLNCRKIMVESDSLQAISLFQQKSK
        W PPT++S KLNTDAA        G+ +I RD  G +  TG         ++ LE++AI +GL   +  +CR I +ESDSL+AI L  +  K
Subjt:  WVPPTADSLKLNTDAACNETIQGIGVCFIFRDSSGTICATGS--FFHPFYLSPLELLAIIQGLEQTQTLNCRKIMVESDSLQAISLFQQKSK
A0A6J1DX30 uncharacterized protein LOC1110248742.1e-0644.44Show/hide
Query:  WVPPTADSLKLNTDAACNETIQGIGVCFIFRDSSGTICATGSFFHPFYLSPL--ELLAIIQGLEQTQTLNCRKIMVESDSLQAISLFQQK
        W P ++ SLKLNTDAAC       G   I RDSS ++ A  S   PF LSPL  E+  I++GL+     N   + VESDSL AI L + +
Subjt:  WVPPTADSLKLNTDAACNETIQGIGVCFIFRDSSGTICATGSFFHPFYLSPL--ELLAIIQGLEQTQTLNCRKIMVESDSLQAISLFQQK
J7G0Q7 Non-ltr retroelement reverse transcriptase2.3e-0540Show/hide
Query:  WVPPTADSLKLNTDAACNETIQGIGVCFIFRDSSGTICATG--SFFHPFYLSPLELLAIIQGLEQTQTLNCRKIMVESDSLQAISLFQQKSKSLA
        W  P++  LK+N D A N   +  G   I RD  G++   G  +F HP      ELLAI  GL+       R IMVESD L+AI L   K + LA
Subjt:  WVPPTADSLKLNTDAACNETIQGIGVCFIFRDSSGTICATG--SFFHPFYLSPLELLAIIQGLEQTQTLNCRKIMVESDSLQAISLFQQKSKSLA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.1e-0429.47Show/hide
Query:  WVPPTADSLKLNTDAACNE--TIQGIGVCFIFRDSSGTI--CATGSFFHPFYLSPLELLAIIQGLEQTQTLNCRKIMVESDSLQAISLFQQKSKS
        W PP  D LK N DA+ +E  T+ G+G  +I R+S GT+  C  G F         E   +I  ++ +     +K++ E D+     +   KS +
Subjt:  WVPPTADSLKLNTDAACNE--TIQGIGVCFIFRDSSGTI--CATGSFFHPFYLSPLELLAIIQGLEQTQTLNCRKIMVESDSLQAISLFQQKSKS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTGTCATGGGTTCCTCCGACTGCTGATAGCCTGAAGCTAAACACGGATGCCGCATGCAATGAGACGATTCAAGGTATCGGTGTGTGTTTTATTTTTCGGGACTCTTCTGG
TACGATTTGTGCAACGGGATCCTTCTTCCACCCATTCTATCTTTCGCCACTTGAGCTTCTCGCAATTATACAAGGATTGGAACAGACTCAAACTCTTAATTGCAGGAAAA
TTATGGTGGAATCAGATTCCCTTCAAGCAATTTCTCTTTTTCAACAAAAGTCGAAATCTTTGGCAGCCTCAAGCGTC
mRNA sequenceShow/hide mRNA sequence
CTGTCATGGGTTCCTCCGACTGCTGATAGCCTGAAGCTAAACACGGATGCCGCATGCAATGAGACGATTCAAGGTATCGGTGTGTGTTTTATTTTTCGGGACTCTTCTGG
TACGATTTGTGCAACGGGATCCTTCTTCCACCCATTCTATCTTTCGCCACTTGAGCTTCTCGCAATTATACAAGGATTGGAACAGACTCAAACTCTTAATTGCAGGAAAA
TTATGGTGGAATCAGATTCCCTTCAAGCAATTTCTCTTTTTCAACAAAAGTCGAAATCTTTGGCAGCCTCAAGCGTC
Protein sequenceShow/hide protein sequence
LSWVPPTADSLKLNTDAACNETIQGIGVCFIFRDSSGTICATGSFFHPFYLSPLELLAIIQGLEQTQTLNCRKIMVESDSLQAISLFQQKSKSLAASSV