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MS006812 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006812
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold60:699320..699736
RNA-Seq ExpressionMS006812
SyntenyMS006812
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsIPR025558 - Domain of unknown function DUF4283
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG53482.1 hypothetical protein EZV62_022651 [Acer yangbiense]2.6e-2543.17Show/hide
Query:  FMFHFIKPSYRNWILHSGPWFFDKSLLILDISTSMTKPSELPFNRVSFWVHFFDLPIACMNKTMALKMGNSIGIFEDVTCNPDGYCCGTSLRARIALDIT
        + FHF     R  +  SGPW FD SL++L+  T       L F+RV FWV   +LP+ CM K +A  +G  IG   +V   P G C G  +R R+A+DIT
Subjt:  FMFHFIKPSYRNWILHSGPWFFDKSLLILDISTSMTKPSELPFNRVSFWVHFFDLPIACMNKTMALKMGNSIGIFEDVTCNPDGYCCGTSLRARIALDIT

Query:  NPLLRGIKLNIDGPMGGCRIPIQYERLPNFCFHCGKLTH
         PL R + +++ G      +PIQYERLP+FCF CG L H
Subjt:  NPLLRGIKLNIDGPMGGCRIPIQYERLPNFCFHCGKLTH

TXG57565.1 hypothetical protein EZV62_015394 [Acer yangbiense]2.6e-2542.45Show/hide
Query:  FMFHFIKPSYRNWILHSGPWFFDKSLLILDISTSMTKPSELPFNRVSFWVHFFDLPIACMNKTMALKMGNSIGIFEDVTCNPDGYCCGTSLRARIALDIT
        F FHF     R  +L  GPW FD +L++L+  T       L F+ V FWVH  +LP+ CM K +A  +G  IG   ++   P G C G  LR R+A+DI 
Subjt:  FMFHFIKPSYRNWILHSGPWFFDKSLLILDISTSMTKPSELPFNRVSFWVHFFDLPIACMNKTMALKMGNSIGIFEDVTCNPDGYCCGTSLRARIALDIT

Query:  NPLLRGIKLNIDGPMGGCRIPIQYERLPNFCFHCGKLTH
         PL R +++++ G      +PIQ+ERLPNFCF+CG L H
Subjt:  NPLLRGIKLNIDGPMGGCRIPIQYERLPNFCFHCGKLTH

XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]3.5e-4659.71Show/hide
Query:  FMFHFIKPSYRNWILHSGPWFFDKSLLILDISTSMTKPSELPFNRVSFWVHFFDLPIACMNKTMALKMGNSIGIFEDVTCNPDGYCCGTSLRARIALDIT
        F+F+F + S RN IL  GPW FD++L+I+D   S+TKP ++ F  VS WVHFFDL +ACMNKTMA ++GN+IG+FEDV  N + +C G+ LR R+  D+ 
Subjt:  FMFHFIKPSYRNWILHSGPWFFDKSLLILDISTSMTKPSELPFNRVSFWVHFFDLPIACMNKTMALKMGNSIGIFEDVTCNPDGYCCGTSLRARIALDIT

Query:  NPLLRGIKLNIDGPMGGCRIPIQYERLPNFCFHCGKLTH
         PL RGIKLN+DGPMGGC IPIQYERLP+F +HCG+L H
Subjt:  NPLLRGIKLNIDGPMGGCRIPIQYERLPNFCFHCGKLTH

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]6.7e-4558.27Show/hide
Query:  FMFHFIKPSYRNWILHSGPWFFDKSLLILDISTSMTKPSELPFNRVSFWVHFFDLPIACMNKTMALKMGNSIGIFEDVTCNPDGYCCGTSLRARIALDIT
        F+FHF +    N ++ +GPWFFDK+L++L    S    SEL FNRV+FW+H FDLP++ +NKTMA+++GN+IG F DV CN  G+  G SLR R+ +DIT
Subjt:  FMFHFIKPSYRNWILHSGPWFFDKSLLILDISTSMTKPSELPFNRVSFWVHFFDLPIACMNKTMALKMGNSIGIFEDVTCNPDGYCCGTSLRARIALDIT

Query:  NPLLRGIKLNIDGPMGGCRIPIQYERLPNFCFHCGKLTH
         PL RGIK+NIDGPMGGC IPIQYERLP+FC+ CG + H
Subjt:  NPLLRGIKLNIDGPMGGCRIPIQYERLPNFCFHCGKLTH

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]1.9e-3651.45Show/hide
Query:  FMFHFIKPSYRNWILHSGPWFFDKSLLILDISTSMTKPSELPFNRVSFWVHFFDLPIACMNKTMALKMGNSIGIFEDVTC---NPDGYCCGTSLRARIAL
        F+F F +   RN I  SGPW FD++L++++   ++  PSEL F ++  WV FFDLP+ C+ + MA+++GN++G FE+  C   NPD    G++LR R+ L
Subjt:  FMFHFIKPSYRNWILHSGPWFFDKSLLILDISTSMTKPSELPFNRVSFWVHFFDLPIACMNKTMALKMGNSIGIFEDVTC---NPDGYCCGTSLRARIAL

Query:  DITNPLLRGIKLNIDGPMGGCRIPIQYERLPNFCFHCG
        DI+ PL RGIKLN+DGP+GG  IPIQYERLP+FC+HCG
Subjt:  DITNPLLRGIKLNIDGPMGGCRIPIQYERLPNFCFHCG

TrEMBL top hitse value%identityAlignment
A0A5C7HA98 CCHC-type domain-containing protein1.3e-2543.17Show/hide
Query:  FMFHFIKPSYRNWILHSGPWFFDKSLLILDISTSMTKPSELPFNRVSFWVHFFDLPIACMNKTMALKMGNSIGIFEDVTCNPDGYCCGTSLRARIALDIT
        + FHF     R  +  SGPW FD SL++L+  T       L F+RV FWV   +LP+ CM K +A  +G  IG   +V   P G C G  +R R+A+DIT
Subjt:  FMFHFIKPSYRNWILHSGPWFFDKSLLILDISTSMTKPSELPFNRVSFWVHFFDLPIACMNKTMALKMGNSIGIFEDVTCNPDGYCCGTSLRARIALDIT

Query:  NPLLRGIKLNIDGPMGGCRIPIQYERLPNFCFHCGKLTH
         PL R + +++ G      +PIQYERLP+FCF CG L H
Subjt:  NPLLRGIKLNIDGPMGGCRIPIQYERLPNFCFHCGKLTH

A0A5C7HLA0 CCHC-type domain-containing protein1.3e-2542.45Show/hide
Query:  FMFHFIKPSYRNWILHSGPWFFDKSLLILDISTSMTKPSELPFNRVSFWVHFFDLPIACMNKTMALKMGNSIGIFEDVTCNPDGYCCGTSLRARIALDIT
        F FHF     R  +L  GPW FD +L++L+  T       L F+ V FWVH  +LP+ CM K +A  +G  IG   ++   P G C G  LR R+A+DI 
Subjt:  FMFHFIKPSYRNWILHSGPWFFDKSLLILDISTSMTKPSELPFNRVSFWVHFFDLPIACMNKTMALKMGNSIGIFEDVTCNPDGYCCGTSLRARIALDIT

Query:  NPLLRGIKLNIDGPMGGCRIPIQYERLPNFCFHCGKLTH
         PL R +++++ G      +PIQ+ERLPNFCF+CG L H
Subjt:  NPLLRGIKLNIDGPMGGCRIPIQYERLPNFCFHCGKLTH

A0A6J1BSZ1 uncharacterized protein LOC1110054811.7e-4659.71Show/hide
Query:  FMFHFIKPSYRNWILHSGPWFFDKSLLILDISTSMTKPSELPFNRVSFWVHFFDLPIACMNKTMALKMGNSIGIFEDVTCNPDGYCCGTSLRARIALDIT
        F+F+F + S RN IL  GPW FD++L+I+D   S+TKP ++ F  VS WVHFFDL +ACMNKTMA ++GN+IG+FEDV  N + +C G+ LR R+  D+ 
Subjt:  FMFHFIKPSYRNWILHSGPWFFDKSLLILDISTSMTKPSELPFNRVSFWVHFFDLPIACMNKTMALKMGNSIGIFEDVTCNPDGYCCGTSLRARIALDIT

Query:  NPLLRGIKLNIDGPMGGCRIPIQYERLPNFCFHCGKLTH
         PL RGIKLN+DGPMGGC IPIQYERLP+F +HCG+L H
Subjt:  NPLLRGIKLNIDGPMGGCRIPIQYERLPNFCFHCGKLTH

A0A6J1DU55 uncharacterized protein LOC1110231353.2e-4558.27Show/hide
Query:  FMFHFIKPSYRNWILHSGPWFFDKSLLILDISTSMTKPSELPFNRVSFWVHFFDLPIACMNKTMALKMGNSIGIFEDVTCNPDGYCCGTSLRARIALDIT
        F+FHF +    N ++ +GPWFFDK+L++L    S    SEL FNRV+FW+H FDLP++ +NKTMA+++GN+IG F DV CN  G+  G SLR R+ +DIT
Subjt:  FMFHFIKPSYRNWILHSGPWFFDKSLLILDISTSMTKPSELPFNRVSFWVHFFDLPIACMNKTMALKMGNSIGIFEDVTCNPDGYCCGTSLRARIALDIT

Query:  NPLLRGIKLNIDGPMGGCRIPIQYERLPNFCFHCGKLTH
         PL RGIK+NIDGPMGGC IPIQYERLP+FC+ CG + H
Subjt:  NPLLRGIKLNIDGPMGGCRIPIQYERLPNFCFHCGKLTH

A0A6J1DX30 uncharacterized protein LOC1110248749.4e-3751.45Show/hide
Query:  FMFHFIKPSYRNWILHSGPWFFDKSLLILDISTSMTKPSELPFNRVSFWVHFFDLPIACMNKTMALKMGNSIGIFEDVTC---NPDGYCCGTSLRARIAL
        F+F F +   RN I  SGPW FD++L++++   ++  PSEL F ++  WV FFDLP+ C+ + MA+++GN++G FE+  C   NPD    G++LR R+ L
Subjt:  FMFHFIKPSYRNWILHSGPWFFDKSLLILDISTSMTKPSELPFNRVSFWVHFFDLPIACMNKTMALKMGNSIGIFEDVTC---NPDGYCCGTSLRARIAL

Query:  DITNPLLRGIKLNIDGPMGGCRIPIQYERLPNFCFHCG
        DI+ PL RGIKLN+DGP+GG  IPIQYERLP+FC+HCG
Subjt:  DITNPLLRGIKLNIDGPMGGCRIPIQYERLPNFCFHCG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G13450.1 unknown protein9.4e-0523.7Show/hide
Query:  YRNWILHSGPWFFDKSLLILDISTSMTKPSELPFNRVSFWVHFFDLPIACMNKTMALKMGNSIG-----IFEDVTCNPDGYCCGTSLRARIALDITNPLL
        Y NW + +  W  + +  +L                +  WV    +P+  + +  AL++ + +G      F D T     Y     +R RI   IT+ L 
Subjt:  YRNWILHSGPWFFDKSLLILDISTSMTKPSELPFNRVSFWVHFFDLPIACMNKTMALKMGNSIG-----IFEDVTCNPDGYCCGTSLRARIALDITNPLL

Query:  RGIKLNIDGPMGGCRIPIQYERLPNFCFHCGKLTH
          +++  D       I  QYERL   C  C ++TH
Subjt:  RGIKLNIDGPMGGCRIPIQYERLPNFCFHCGKLTH

AT3G42140.1 zinc ion binding;nucleic acid binding4.5e-0723.02Show/hide
Query:  ILHSGPWFFDKSLLILDISTSMTKPSELPFNRVSFWVHFFDLPIACMNKTMALKMGNSIGIFEDVTCNPDGYCCGTSLRARIALDITNPLLRGIKLNIDG
        IL  GPW F+  + ++   T +   +E  F R+ FW+    +P+  +   +   +G  +G+F               L   +  D++             
Subjt:  ILHSGPWFFDKSLLILDISTSMTKPSELPFNRVSFWVHFFDLPIACMNKTMALKMGNSIGIFEDVTCNPDGYCCGTSLRARIALDITNPLLRGIKLNIDG

Query:  PMGGCRIPIQYERLPNFCFHCGKLTH
              +  QYE+L NFC  CG L+H
Subjt:  PMGGCRIPIQYERLPNFCFHCGKLTH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTATGTTTCATTTCATCAAACCTTCTTATCGAAATTGGATTTTACATTCCGGTCCATGGTTTTTTGATAAGTCCCTCCTCATTTTGGACATTTCCACTTCAATGACAAA
GCCTTCGGAGTTGCCCTTCAACAGAGTCTCTTTCTGGGTTCATTTCTTTGATCTCCCTATAGCATGTATGAACAAAACCATGGCGTTGAAGATGGGTAATTCCATCGGCA
TCTTCGAAGATGTCACTTGTAACCCTGATGGATATTGTTGTGGTACAAGCCTCCGGGCAAGGATTGCTTTGGATATTACAAATCCTCTTCTGCGTGGGATCAAACTCAAC
ATTGATGGTCCAATGGGAGGCTGCCGGATCCCAATTCAATATGAACGCCTTCCAAATTTTTGCTTCCATTGTGGTAAATTAACCCAT
mRNA sequenceShow/hide mRNA sequence
TTTATGTTTCATTTCATCAAACCTTCTTATCGAAATTGGATTTTACATTCCGGTCCATGGTTTTTTGATAAGTCCCTCCTCATTTTGGACATTTCCACTTCAATGACAAA
GCCTTCGGAGTTGCCCTTCAACAGAGTCTCTTTCTGGGTTCATTTCTTTGATCTCCCTATAGCATGTATGAACAAAACCATGGCGTTGAAGATGGGTAATTCCATCGGCA
TCTTCGAAGATGTCACTTGTAACCCTGATGGATATTGTTGTGGTACAAGCCTCCGGGCAAGGATTGCTTTGGATATTACAAATCCTCTTCTGCGTGGGATCAAACTCAAC
ATTGATGGTCCAATGGGAGGCTGCCGGATCCCAATTCAATATGAACGCCTTCCAAATTTTTGCTTCCATTGTGGTAAATTAACCCAT
Protein sequenceShow/hide protein sequence
FMFHFIKPSYRNWILHSGPWFFDKSLLILDISTSMTKPSELPFNRVSFWVHFFDLPIACMNKTMALKMGNSIGIFEDVTCNPDGYCCGTSLRARIALDITNPLLRGIKLN
IDGPMGGCRIPIQYERLPNFCFHCGKLTH