; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS006878 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006878
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description30S ribosomal protein S12, chloroplastic
Genome locationscaffold871:411136..411462
RNA-Seq ExpressionMS006878
SyntenyMS006878
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR006032 - Ribosomal protein S12/S23
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF1876942.1 hypothetical protein Lal_00033867 [Lupinus albus]6.6e-4086.24Show/hide
Query:  NENVIELVPVTLQDRMEEGRRFSNEEKDLMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTI-PKKPNSALRKVARVRLTSGFEITAYIPG-GHNLQE
        +ENV +LV VTL+D +EEG RFSNEEKD MTSKELN+E YEVKISC+VL SGSKGDLSVNFSTI PKKPNSALRKVARVRLTSGFEITAYIPG GHNLQE
Subjt:  NENVIELVPVTLQDRMEEGRRFSNEEKDLMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTI-PKKPNSALRKVARVRLTSGFEITAYIPG-GHNLQE

Query:  HFVVLVRGG
        HFVVLVRGG
Subjt:  HFVVLVRGG

RWR98012.1 LOW QUALITY PROTEIN: 30S ribosomal protein S12, chloroplastic [Cinnamomum micranthum f. kanehirae]8.0e-3885.32Show/hide
Query:  NENVIELVPVTLQDRMEEGRRFSNEEKDLMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTI-PKKPNSALRKVARVRLTSGFEITAYIPG-GHNLQE
        +ENV ELV VTL+D +EEGRRFSNEEKD +TSKELNEEPYEVKISCT   S SKGDLSVNFSTI PKKPNSALRKVARVRLTSGFEITAYIPG GHN QE
Subjt:  NENVIELVPVTLQDRMEEGRRFSNEEKDLMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTI-PKKPNSALRKVARVRLTSGFEITAYIPG-GHNLQE

Query:  HFVVLVRGG
        H VVLVRGG
Subjt:  HFVVLVRGG

XP_022932068.1 uncharacterized protein LOC111438394 [Cucurbita moschata]1.4e-4593.64Show/hide
Query:  MNENVIELVPVTLQDRMEEGRRFSNEEKDLMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTI-PKKPNSALRKVARVRLTSGFEITAYIPG-GHNLQ
        MNENV ELVPVTL+D MEEGRRFSNEEKD MTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTI PKKPNSALRKVARVRLTSGFEITAYIPG GHNLQ
Subjt:  MNENVIELVPVTLQDRMEEGRRFSNEEKDLMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTI-PKKPNSALRKVARVRLTSGFEITAYIPG-GHNLQ

Query:  EHFVVLVRGG
        EH VVLVRGG
Subjt:  EHFVVLVRGG

XP_038896566.1 30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]4.5e-4188.18Show/hide
Query:  MNENVIELVPVTLQDRMEEGRRFSNEEKDLMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTI-PKKPNSALRKVARVRLTSGFEITAYIPG-GHNLQ
        MNENV +LVPVTL+D MEEGRRFSNEEKD MTSKELNEEPYEVKIS TVLSSGSKGDLSVNFSTI PK  NSALRKVARVRLTSGFEI AYIPG GHNLQ
Subjt:  MNENVIELVPVTLQDRMEEGRRFSNEEKDLMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTI-PKKPNSALRKVARVRLTSGFEITAYIPG-GHNLQ

Query:  EHFVVLVRGG
        EH  VLVRGG
Subjt:  EHFVVLVRGG

XP_038902483.1 30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]1.8e-4290.83Show/hide
Query:  MNENVIELVPVTLQDRMEEGRRFSNEEKDLMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTI-PKKPNSALRKVARVRLTSGFEITAYIPG-GHNLQ
        MNENV ELV VTL+D MEEGRRFSNEEKD MTSKELNEEPYEVKIS TVLSSGSKGDLS+NFSTI PKKPNSALRKVARVRLTSGFEITAYIPG GHNLQ
Subjt:  MNENVIELVPVTLQDRMEEGRRFSNEEKDLMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTI-PKKPNSALRKVARVRLTSGFEITAYIPG-GHNLQ

Query:  EHFVVLVRG
        E+FVVLVRG
Subjt:  EHFVVLVRG

TrEMBL top hitse value%identityAlignment
A0A3S3NSS0 30S ribosomal protein S12, chloroplastic3.9e-3885.32Show/hide
Query:  NENVIELVPVTLQDRMEEGRRFSNEEKDLMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTI-PKKPNSALRKVARVRLTSGFEITAYIPG-GHNLQE
        +ENV ELV VTL+D +EEGRRFSNEEKD +TSKELNEEPYEVKISCT   S SKGDLSVNFSTI PKKPNSALRKVARVRLTSGFEITAYIPG GHN QE
Subjt:  NENVIELVPVTLQDRMEEGRRFSNEEKDLMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTI-PKKPNSALRKVARVRLTSGFEITAYIPG-GHNLQE

Query:  HFVVLVRGG
        H VVLVRGG
Subjt:  HFVVLVRGG

A0A6A5N1Q8 Uncharacterized protein3.2e-4086.24Show/hide
Query:  NENVIELVPVTLQDRMEEGRRFSNEEKDLMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTI-PKKPNSALRKVARVRLTSGFEITAYIPG-GHNLQE
        +ENV +LV VTL+D +EEG RFSNEEKD MTSKELN+E YEVKISC+VL SGSKGDLSVNFSTI PKKPNSALRKVARVRLTSGFEITAYIPG GHNLQE
Subjt:  NENVIELVPVTLQDRMEEGRRFSNEEKDLMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTI-PKKPNSALRKVARVRLTSGFEITAYIPG-GHNLQE

Query:  HFVVLVRGG
        HFVVLVRGG
Subjt:  HFVVLVRGG

A0A6J1F0L1 uncharacterized protein LOC1114383946.6e-4693.64Show/hide
Query:  MNENVIELVPVTLQDRMEEGRRFSNEEKDLMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTI-PKKPNSALRKVARVRLTSGFEITAYIPG-GHNLQ
        MNENV ELVPVTL+D MEEGRRFSNEEKD MTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTI PKKPNSALRKVARVRLTSGFEITAYIPG GHNLQ
Subjt:  MNENVIELVPVTLQDRMEEGRRFSNEEKDLMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTI-PKKPNSALRKVARVRLTSGFEITAYIPG-GHNLQ

Query:  EHFVVLVRGG
        EH VVLVRGG
Subjt:  EHFVVLVRGG

A0A6P3YU62 uncharacterized protein LOC1074047802.1e-3677.98Show/hide
Query:  MNENVIELVPVTLQDRMEEGRRFSNEEKDLMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFS-TIPKKPNSALRKVARVRLTSGFEITAYIPG-GHNLQ
        MNENV ELV VTLQ+ +EEG+RFSNEE D MTSKELNEEPYE+KISC VL +G KGDLS+NFS  IPKKPNSAL KVARVRLT GFE+T +IPG GHNLQ
Subjt:  MNENVIELVPVTLQDRMEEGRRFSNEEKDLMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFS-TIPKKPNSALRKVARVRLTSGFEITAYIPG-GHNLQ

Query:  EHFVVLVRG
        +H VVLVRG
Subjt:  EHFVVLVRG

A0A6P6GKJ1 uncharacterized protein LOC1124887682.1e-3677.98Show/hide
Query:  MNENVIELVPVTLQDRMEEGRRFSNEEKDLMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFS-TIPKKPNSALRKVARVRLTSGFEITAYIPG-GHNLQ
        MNENV ELV VTLQ+ +EEG+RFSNEE D MTSKELNEEPYE+KISC VL +G KGDLS+NFS  IPKKPNSAL KVARVRLT GFE+T +IPG GHNLQ
Subjt:  MNENVIELVPVTLQDRMEEGRRFSNEEKDLMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFS-TIPKKPNSALRKVARVRLTSGFEITAYIPG-GHNLQ

Query:  EHFVVLVRG
        +H VVLVRG
Subjt:  EHFVVLVRG

SwissProt top hitse value%identityAlignment
A2T357 30S ribosomal protein S12, chloroplastic1.4e-1689.58Show/hide
Query:  FSTIPKKPNSALRKVARVRLTSGFEITAYIPG-GHNLQEHFVVLVRGG
        ++T PKKPNSALRKVARVRLTSGFEITAYIPG GHNLQEH VVLVRGG
Subjt:  FSTIPKKPNSALRKVARVRLTSGFEITAYIPG-GHNLQEHFVVLVRGG

A4GYN8 30S ribosomal protein S12-B, chloroplastic1.7e-2287.69Show/hide
Query:  SCTVLSSGSKGDLSVNFSTI-PKKPNSALRKVARVRLTSGFEITAYIPG-GHNLQEHFVVLVRGG
        +CT + SGSKGDLSVNFSTI PKKPNSALRKVARVRLTSGFEITAYIPG GHN QEH VVLVRGG
Subjt:  SCTVLSSGSKGDLSVNFSTI-PKKPNSALRKVARVRLTSGFEITAYIPG-GHNLQEHFVVLVRGG

Q19V72 30S ribosomal protein S12, chloroplastic1.8e-1687.5Show/hide
Query:  FSTIPKKPNSALRKVARVRLTSGFEITAYIPG-GHNLQEHFVVLVRGG
        ++T PKKPNSALRKVARVRLTSGFE+TAYIPG GHNLQEH VVLVRGG
Subjt:  FSTIPKKPNSALRKVARVRLTSGFEITAYIPG-GHNLQEHFVVLVRGG

Q8MA18 30S ribosomal protein S12, chloroplastic1.8e-1665.75Show/hide
Query:  EPYEVKISCTVLSS--GSKGDLSVNFSTIPKKPNSALRKVARVRLTSGFEITAYIPG-GHNLQEHFVVLVRGG
        EP E +     L S    +G  +  ++T PKKPNSALRKVARVRLTSGFE+TAYIPG GHNLQEH VVLVRGG
Subjt:  EPYEVKISCTVLSS--GSKGDLSVNFSTIPKKPNSALRKVARVRLTSGFEITAYIPG-GHNLQEHFVVLVRGG

Q9TLV6 30S ribosomal protein S12, chloroplastic1.1e-1680Show/hide
Query:  KGDLSVNFSTIPKKPNSALRKVARVRLTSGFEITAYIPG-GHNLQEHFVVLVRGG
        KG  +  ++T PKKPNSALRKVARVRLTSGFEITAYIPG GHNLQEH VVL+RGG
Subjt:  KGDLSVNFSTIPKKPNSALRKVARVRLTSGFEITAYIPG-GHNLQEHFVVLVRGG

Arabidopsis top hitse value%identityAlignment
AT2G07675.1 Ribosomal protein S12/S23 family protein5.8e-1065.91Show/hide
Query:  PKKPNSALRKVARVRLTSGFEITAYIPG-GHNLQEHFVVLVRGG
        PKKPNSA RK+A+VRL++  +I A+IPG GHN QEH  VL+RGG
Subjt:  PKKPNSALRKVARVRLTSGFEITAYIPG-GHNLQEHFVVLVRGG

ATCG00065.1 ribosomal protein S12A4.9e-1778.18Show/hide
Query:  KGDLSVNFSTIPKKPNSALRKVARVRLTSGFEITAYIPG-GHNLQEHFVVLVRGG
        +G  +  ++  PKKPNSALRKVARVRLTSGFEITAYIPG GHNLQEH VVLVRGG
Subjt:  KGDLSVNFSTIPKKPNSALRKVARVRLTSGFEITAYIPG-GHNLQEHFVVLVRGG

ATCG00905.1 ribosomal protein S12C4.9e-1778.18Show/hide
Query:  KGDLSVNFSTIPKKPNSALRKVARVRLTSGFEITAYIPG-GHNLQEHFVVLVRGG
        +G  +  ++  PKKPNSALRKVARVRLTSGFEITAYIPG GHNLQEH VVLVRGG
Subjt:  KGDLSVNFSTIPKKPNSALRKVARVRLTSGFEITAYIPG-GHNLQEHFVVLVRGG

ATCG01230.1 ribosomal protein S12B4.9e-1778.18Show/hide
Query:  KGDLSVNFSTIPKKPNSALRKVARVRLTSGFEITAYIPG-GHNLQEHFVVLVRGG
        +G  +  ++  PKKPNSALRKVARVRLTSGFEITAYIPG GHNLQEH VVLVRGG
Subjt:  KGDLSVNFSTIPKKPNSALRKVARVRLTSGFEITAYIPG-GHNLQEHFVVLVRGG

ATMG00980.1 Ribosomal protein S12/S23 family protein5.8e-1065.91Show/hide
Query:  PKKPNSALRKVARVRLTSGFEITAYIPG-GHNLQEHFVVLVRGG
        PKKPNSA RK+A+VRL++  +I A+IPG GHN QEH  VL+RGG
Subjt:  PKKPNSALRKVARVRLTSGFEITAYIPG-GHNLQEHFVVLVRGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGAAAACGTGATTGAATTGGTCCCAGTTACTCTTCAGGACAGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCTAATGACTTCGAAAGAATTGAA
CGAGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCCCCAAAAAACCAAACTCTGCCTTAC
GTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTGGTCATAATTTACAAGAACATTTTGTAGTCTTAGTAAGAGGTGGA
mRNA sequenceShow/hide mRNA sequence
ATGAATGAAAACGTGATTGAATTGGTCCCAGTTACTCTTCAGGACAGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCTAATGACTTCGAAAGAATTGAA
CGAGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCCCCAAAAAACCAAACTCTGCCTTAC
GTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTGGTCATAATTTACAAGAACATTTTGTAGTCTTAGTAAGAGGTGGA
Protein sequenceShow/hide protein sequence
MNENVIELVPVTLQDRMEEGRRFSNEEKDLMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTIPKKPNSALRKVARVRLTSGFEITAYIPGGHNLQEHFVVLVRGG