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MS006957 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006957
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNA-directed RNA polymerase subunit alpha
Genome locationscaffold196:127926..128063
RNA-Seq ExpressionMS006957
SyntenyMS006957
Gene Ontology termsGO:0009536 - plastid (cellular component)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsIPR036643 - DNA-directed RNA polymerase, insert domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AXU40595.1 RNA polymerase alpha subunit [Gomphogyne cissiformis var. cissiformis]2.0e-0966.67Show/hide
Query:  LSPPMKGQADTIGIAMQKT--------------SEKIPHEYSTIIGIQESVHETLMNWKQ
        LSP MKGQADTIGIAM+K               SEKIPHEYSTIIGIQESVHE LMN K+
Subjt:  LSPPMKGQADTIGIAMQKT--------------SEKIPHEYSTIIGIQESVHETLMNWKQ
QBC72615.1 RNA polymerase alpha subunit [Simmondsia chinensis]1.5e-0965Show/hide
Query:  LSPPMKGQADTIGIAMQKT--------------SEKIPHEYSTIIGIQESVHETLMNWKQ
        LSP MKGQADTIGIAM++T              SEKIPHEYSTI+GIQESVHE LMN K+
Subjt:  LSPPMKGQADTIGIAMQKT--------------SEKIPHEYSTIIGIQESVHETLMNWKQ
QTJ26277.1 RNA polymerase alpha subunit [Atraphaxis bracteata]1.1e-0966.67Show/hide
Query:  LSPPMKGQADTIGIAMQK--------------TSEKIPHEYSTIIGIQESVHETLMNWKQ
        LSP MKGQADTIGIAM++              TSEKIPHEYSTIIGIQESVHE LMN K+
Subjt:  LSPPMKGQADTIGIAMQK--------------TSEKIPHEYSTIIGIQESVHETLMNWKQ
YP_009556292.1 RNA polymerase alpha subunit [Simmondsia chinensis]1.5e-0965Show/hide
Query:  LSPPMKGQADTIGIAMQKT--------------SEKIPHEYSTIIGIQESVHETLMNWKQ
        LSP MKGQADTIGIAM++T              SEKIPHEYSTI+GIQESVHE LMN K+
Subjt:  LSPPMKGQADTIGIAMQKT--------------SEKIPHEYSTIIGIQESVHETLMNWKQ
YP_010019511.1 RNA polymerase alpha subunit [Primula taliensis]1.5e-0965Show/hide
Query:  LSPPMKGQADTIGIAMQKT--------------SEKIPHEYSTIIGIQESVHETLMNWKQ
        LSP MKGQADTIGIAM++T              SEKIPHEYSTI+GIQESVHE LMN K+
Subjt:  LSPPMKGQADTIGIAMQKT--------------SEKIPHEYSTIIGIQESVHETLMNWKQ
TrEMBL top hitse value%identityAlignment
A0A346TM31 DNA-directed RNA polymerase subunit alpha9.5e-1066.67Show/hide
Query:  LSPPMKGQADTIGIAMQKT--------------SEKIPHEYSTIIGIQESVHETLMNWKQ
        LSP MKGQADTIGIAM+K               SEKIPHEYSTIIGIQESVHE LMN K+
Subjt:  LSPPMKGQADTIGIAMQKT--------------SEKIPHEYSTIIGIQESVHETLMNWKQ
A0A346TMK5 DNA-directed RNA polymerase subunit alpha9.5e-1066.67Show/hide
Query:  LSPPMKGQADTIGIAMQKT--------------SEKIPHEYSTIIGIQESVHETLMNWKQ
        LSP MKGQADTIGIAM+K               SEKIPHEYSTIIGIQESVHE LMN K+
Subjt:  LSPPMKGQADTIGIAMQKT--------------SEKIPHEYSTIIGIQESVHETLMNWKQ
A0A411JYM3 Plastid-encoded RNA polymerase subunit alpha7.2e-1065Show/hide
Query:  LSPPMKGQADTIGIAMQKT--------------SEKIPHEYSTIIGIQESVHETLMNWKQ
        LSP MKGQADTIGIAM++T              SEKIPHEYSTI+GIQESVHE LMN K+
Subjt:  LSPPMKGQADTIGIAMQKT--------------SEKIPHEYSTIIGIQESVHETLMNWKQ
A0A411K5M5 Plastid-encoded RNA polymerase subunit alpha7.2e-1065Show/hide
Query:  LSPPMKGQADTIGIAMQKT--------------SEKIPHEYSTIIGIQESVHETLMNWKQ
        LSP MKGQADTIGIAM++T              SEKIPHEYSTI+GIQESVHE LMN K+
Subjt:  LSPPMKGQADTIGIAMQKT--------------SEKIPHEYSTIIGIQESVHETLMNWKQ
A0A7L9D5P3 DNA-directed RNA polymerase subunit alpha7.2e-1065Show/hide
Query:  LSPPMKGQADTIGIAMQKT--------------SEKIPHEYSTIIGIQESVHETLMNWKQ
        LSP MKGQADTIGIAM++T              SEKIPHEYSTI+GIQESVHE LMN K+
Subjt:  LSPPMKGQADTIGIAMQKT--------------SEKIPHEYSTIIGIQESVHETLMNWKQ
SwissProt top hitse value%identityAlignment
A0ZZ67 DNA-directed RNA polymerase subunit alpha7.5e-1263.33Show/hide
Query:  LSPPMKGQADTIGIAMQKT--------------SEKIPHEYSTIIGIQESVHETLMNWKQ
        LSP MKGQADTIGIAM++               SEKIPHEYSTI+GIQESVHE LMN K+
Subjt:  LSPPMKGQADTIGIAMQKT--------------SEKIPHEYSTIIGIQESVHETLMNWKQ
P06505 DNA-directed RNA polymerase subunit alpha9.7e-1263.33Show/hide
Query:  LSPPMKGQADTIGIAMQKT--------------SEKIPHEYSTIIGIQESVHETLMNWKQ
        LSP MKGQADTIGIAM++               SEKIPHEYSTI+GIQESVHE LMN K+
Subjt:  LSPPMKGQADTIGIAMQKT--------------SEKIPHEYSTIIGIQESVHETLMNWKQ
Q2L938 DNA-directed RNA polymerase subunit alpha7.5e-1263.33Show/hide
Query:  LSPPMKGQADTIGIAMQKT--------------SEKIPHEYSTIIGIQESVHETLMNWKQ
        LSP MKGQADTIGIAM++               SEKIPHEYSTI+GIQESVHE LMN K+
Subjt:  LSPPMKGQADTIGIAMQKT--------------SEKIPHEYSTIIGIQESVHETLMNWKQ
Q4VZK3 DNA-directed RNA polymerase subunit alpha9.7e-1263.33Show/hide
Query:  LSPPMKGQADTIGIAMQKT--------------SEKIPHEYSTIIGIQESVHETLMNWKQ
        LSP MKGQ DTIGIAM+K               SEKIPHEYSTI+GIQESVHE LMN K+
Subjt:  LSPPMKGQADTIGIAMQKT--------------SEKIPHEYSTIIGIQESVHETLMNWKQ
Q7YJU6 DNA-directed RNA polymerase subunit alpha9.7e-1261.67Show/hide
Query:  LSPPMKGQADTIGIAMQKT--------------SEKIPHEYSTIIGIQESVHETLMNWKQ
        LSP MKGQADTIGIAM+K               SEK+PHEYSTI+GI+ESVHE LMN K+
Subjt:  LSPPMKGQADTIGIAMQKT--------------SEKIPHEYSTIIGIQESVHETLMNWKQ
Arabidopsis top hitse value%identityAlignment
ATCG00740.1 RNA polymerase subunit alpha1.9e-1059.65Show/hide
Query:  LSPPMKGQADTIGIAMQKT--------------SEKIPHEYSTIIGIQESVHETLMN
        LSP MKGQADTIGIAM++               SE IPH+YS I GIQESVHE LMN
Subjt:  LSPPMKGQADTIGIAMQKT--------------SEKIPHEYSTIIGIQESVHETLMN

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTGTCTCCACCTATGAAGGGTCAAGCCGATACTATAGGCATTGCGATGCAAAAAACTTCTGAAAAAATACCACACGAATACTCTACCATAATTGGTATTCAAGAATCAGT
ACATGAAACTTTAATGAATTGGAAACAG
mRNA sequenceShow/hide mRNA sequence
CTGTCTCCACCTATGAAGGGTCAAGCCGATACTATAGGCATTGCGATGCAAAAAACTTCTGAAAAAATACCACACGAATACTCTACCATAATTGGTATTCAAGAATCAGT
ACATGAAACTTTAATGAATTGGAAACAG
Protein sequenceShow/hide protein sequence
LSPPMKGQADTIGIAMQKTSEKIPHEYSTIIGIQESVHETLMNWKQ