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MS006981 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006981
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionEukaryotic translation initiation factor 3 subunit B
Genome locationscaffold693:49168..49628
RNA-Seq ExpressionMS006981
SyntenyMS006981
Gene Ontology termsGO:0001732 - formation of cytoplasmic translation initiation complex (biological process)
GO:0005852 - eukaryotic translation initiation factor 3 complex (cellular component)
GO:0016282 - eukaryotic 43S preinitiation complex (cellular component)
GO:0033290 - eukaryotic 48S preinitiation complex (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0031369 - translation initiation factor binding (molecular function)
InterPro domainsIPR011400 - Eukaryotic translation initiation factor 3 subunit B


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6587405.1 Eukaryotic translation initiation factor 3 subunit B, partial [Cucurbita argyrosperma subsp. sororia]1.6e-3576.36Show/hide
Query:  RLVINYCDVRTRKVMRDFEGSFDDFVTGET-GVAGVSWPIFRWGGGKDDKYLARMGKN-ISVYETDTFSLID-KSLKVENVKDACGSPI-PLLALLFLEV
        R+VIN  DVRT KVMRDF+GS DDF  G T GVAGVSWP+FRWGGGKDDKY ARMGKN ISVYET+TFSLID KSLKVENV D C SP  P++AL   E+
Subjt:  RLVINYCDVRTRKVMRDFEGSFDDFVTGET-GVAGVSWPIFRWGGGKDDKYLARMGKN-ISVYETDTFSLID-KSLKVENVKDACGSPI-PLLALLFLEV

Query:  GGGNQPARVS
        GGGNQPARVS
Subjt:  GGGNQPARVS

KAG7021391.1 Eukaryotic translation initiation factor 3 subunit B [Cucurbita argyrosperma subsp. argyrosperma]1.6e-3576.36Show/hide
Query:  RLVINYCDVRTRKVMRDFEGSFDDFVTGET-GVAGVSWPIFRWGGGKDDKYLARMGKN-ISVYETDTFSLID-KSLKVENVKDACGSPI-PLLALLFLEV
        R+VIN  DVRT KVMRDF+GS DDF  G T GVAGVSWP+FRWGGGKDDKY ARMGKN ISVYET+TFSLID KSLKVENV D C SP  P++AL   E+
Subjt:  RLVINYCDVRTRKVMRDFEGSFDDFVTGET-GVAGVSWPIFRWGGGKDDKYLARMGKN-ISVYETDTFSLID-KSLKVENVKDACGSPI-PLLALLFLEV

Query:  GGGNQPARVS
        GGGNQPARVS
Subjt:  GGGNQPARVS

XP_008447809.1 PREDICTED: eukaryotic translation initiation factor 3 subunit B-like isoform X1 [Cucumis melo]9.6e-3676.36Show/hide
Query:  RLVINYCDVRTRKVMRDFEGSFDDFVTGET-GVAGVSWPIFRWGGGKDDKYLARMGKN-ISVYETDTFSLID-KSLKVENVKDACGSPI-PLLALLFLEV
        R+VIN  DVRT KVMRDF+GS DDF TG T GVAGVSWP+FRWGGGKDDKY AR+GKN ISVYET+TFSLID KSLKVENV D C SP  P++AL   E+
Subjt:  RLVINYCDVRTRKVMRDFEGSFDDFVTGET-GVAGVSWPIFRWGGGKDDKYLARMGKN-ISVYETDTFSLID-KSLKVENVKDACGSPI-PLLALLFLEV

Query:  GGGNQPARVS
        GGGNQPARVS
Subjt:  GGGNQPARVS

XP_008447811.1 PREDICTED: eukaryotic translation initiation factor 3 subunit B-like isoform X2 [Cucumis melo]9.6e-3676.36Show/hide
Query:  RLVINYCDVRTRKVMRDFEGSFDDFVTGET-GVAGVSWPIFRWGGGKDDKYLARMGKN-ISVYETDTFSLID-KSLKVENVKDACGSPI-PLLALLFLEV
        R+VIN  DVRT KVMRDF+GS DDF TG T GVAGVSWP+FRWGGGKDDKY AR+GKN ISVYET+TFSLID KSLKVENV D C SP  P++AL   E+
Subjt:  RLVINYCDVRTRKVMRDFEGSFDDFVTGET-GVAGVSWPIFRWGGGKDDKYLARMGKN-ISVYETDTFSLID-KSLKVENVKDACGSPI-PLLALLFLEV

Query:  GGGNQPARVS
        GGGNQPARVS
Subjt:  GGGNQPARVS

XP_023530906.1 eukaryotic translation initiation factor 3 subunit B-like isoform X2 [Cucurbita pepo subsp. pepo]1.6e-3576.36Show/hide
Query:  RLVINYCDVRTRKVMRDFEGSFDDFVTGET-GVAGVSWPIFRWGGGKDDKYLARMGKN-ISVYETDTFSLID-KSLKVENVKDACGSPI-PLLALLFLEV
        R+VIN  DVRT KVMRDF+GS DDF  G T GVAGVSWP+FRWGGGKDDKY ARMGKN ISVYET+TFSLID KSLKVENV D C SP  P++AL   E+
Subjt:  RLVINYCDVRTRKVMRDFEGSFDDFVTGET-GVAGVSWPIFRWGGGKDDKYLARMGKN-ISVYETDTFSLID-KSLKVENVKDACGSPI-PLLALLFLEV

Query:  GGGNQPARVS
        GGGNQPARVS
Subjt:  GGGNQPARVS

TrEMBL top hitse value%identityAlignment
A0A1S3BIW9 Eukaryotic translation initiation factor 3 subunit B4.7e-3676.36Show/hide
Query:  RLVINYCDVRTRKVMRDFEGSFDDFVTGET-GVAGVSWPIFRWGGGKDDKYLARMGKN-ISVYETDTFSLID-KSLKVENVKDACGSPI-PLLALLFLEV
        R+VIN  DVRT KVMRDF+GS DDF TG T GVAGVSWP+FRWGGGKDDKY AR+GKN ISVYET+TFSLID KSLKVENV D C SP  P++AL   E+
Subjt:  RLVINYCDVRTRKVMRDFEGSFDDFVTGET-GVAGVSWPIFRWGGGKDDKYLARMGKN-ISVYETDTFSLID-KSLKVENVKDACGSPI-PLLALLFLEV

Query:  GGGNQPARVS
        GGGNQPARVS
Subjt:  GGGNQPARVS

A0A1S3BJ74 Eukaryotic translation initiation factor 3 subunit B4.7e-3676.36Show/hide
Query:  RLVINYCDVRTRKVMRDFEGSFDDFVTGET-GVAGVSWPIFRWGGGKDDKYLARMGKN-ISVYETDTFSLID-KSLKVENVKDACGSPI-PLLALLFLEV
        R+VIN  DVRT KVMRDF+GS DDF TG T GVAGVSWP+FRWGGGKDDKY AR+GKN ISVYET+TFSLID KSLKVENV D C SP  P++AL   E+
Subjt:  RLVINYCDVRTRKVMRDFEGSFDDFVTGET-GVAGVSWPIFRWGGGKDDKYLARMGKN-ISVYETDTFSLID-KSLKVENVKDACGSPI-PLLALLFLEV

Query:  GGGNQPARVS
        GGGNQPARVS
Subjt:  GGGNQPARVS

A0A5D3DI02 Eukaryotic translation initiation factor 3 subunit B4.7e-3676.36Show/hide
Query:  RLVINYCDVRTRKVMRDFEGSFDDFVTGET-GVAGVSWPIFRWGGGKDDKYLARMGKN-ISVYETDTFSLID-KSLKVENVKDACGSPI-PLLALLFLEV
        R+VIN  DVRT KVMRDF+GS DDF TG T GVAGVSWP+FRWGGGKDDKY AR+GKN ISVYET+TFSLID KSLKVENV D C SP  P++AL   E+
Subjt:  RLVINYCDVRTRKVMRDFEGSFDDFVTGET-GVAGVSWPIFRWGGGKDDKYLARMGKN-ISVYETDTFSLID-KSLKVENVKDACGSPI-PLLALLFLEV

Query:  GGGNQPARVS
        GGGNQPARVS
Subjt:  GGGNQPARVS

A0A6J1EX71 Eukaryotic translation initiation factor 3 subunit B1.0e-3575.45Show/hide
Query:  RLVINYCDVRTRKVMRDFEGSFDDFVTGET-GVAGVSWPIFRWGGGKDDKYLARMGKN-ISVYETDTFSLID-KSLKVENVKDACGSPI-PLLALLFLEV
        R+VIN  DVRT KVMRDF+GS DDF  G T GVAG+SWP+FRWGGGKDDKY ARMGKN ISVYET+TFSLID KSLKVENV D C SP  P++AL   E+
Subjt:  RLVINYCDVRTRKVMRDFEGSFDDFVTGET-GVAGVSWPIFRWGGGKDDKYLARMGKN-ISVYETDTFSLID-KSLKVENVKDACGSPI-PLLALLFLEV

Query:  GGGNQPARVS
        GGGNQPARVS
Subjt:  GGGNQPARVS

A0A6J1F2E7 Eukaryotic translation initiation factor 3 subunit B1.0e-3575.45Show/hide
Query:  RLVINYCDVRTRKVMRDFEGSFDDFVTGET-GVAGVSWPIFRWGGGKDDKYLARMGKN-ISVYETDTFSLID-KSLKVENVKDACGSPI-PLLALLFLEV
        R+VIN  DVRT KVMRDF+GS DDF  G T GVAG+SWP+FRWGGGKDDKY ARMGKN ISVYET+TFSLID KSLKVENV D C SP  P++AL   E+
Subjt:  RLVINYCDVRTRKVMRDFEGSFDDFVTGET-GVAGVSWPIFRWGGGKDDKYLARMGKN-ISVYETDTFSLID-KSLKVENVKDACGSPI-PLLALLFLEV

Query:  GGGNQPARVS
        GGGNQPARVS
Subjt:  GGGNQPARVS

SwissProt top hitse value%identityAlignment
B0W562 Eukaryotic translation initiation factor 3 subunit B1.1e-0555.1Show/hide
Query:  IFRWGGGKDDKYLARMGKN-ISVYETDTFSLID-KSLKVENVKDACGSP
        +FRW    DDKY+ARMG N I VYET+TF L+D KS+KV+ +++   SP
Subjt:  IFRWGGGKDDKYLARMGKN-ISVYETDTFSLID-KSLKVENVKDACGSP

P56821 Eukaryotic translation initiation factor 3 subunit B4.3e-3167.89Show/hide
Query:  LVINYCDVRTRKVMRDFEGSFDDFVTGET-GVAGVSWPIFRWGGGKDDKYLARMGKN-ISVYETDTFSLID-KSLKVENVKDACGSPI-PLLALLFLEVG
        +V+N  DVRT KVMRDF+GS D+F  G T GV GVSWP+FRW GGK DKY AR+GKN ISVYET+TFSLID KS+KVENV D   SP  P+LAL   E  
Subjt:  LVINYCDVRTRKVMRDFEGSFDDFVTGET-GVAGVSWPIFRWGGGKDDKYLARMGKN-ISVYETDTFSLID-KSLKVENVKDACGSPI-PLLALLFLEVG

Query:  GGNQPARVS
         GNQPARVS
Subjt:  GGNQPARVS

Q0IEY3 Eukaryotic translation initiation factor 3 subunit B1.4e-0555.1Show/hide
Query:  IFRWGGGKDDKYLARMGKN-ISVYETDTFSLID-KSLKVENVKDACGSP
        +FRW    DDKY+ARMG N I VYET TF L+D KS+KV+ +++   SP
Subjt:  IFRWGGGKDDKYLARMGKN-ISVYETDTFSLID-KSLKVENVKDACGSP

Q10425 Eukaryotic translation initiation factor 3 subunit B4.0e-0838.39Show/hide
Query:  DVRTRKVMRDFEGSFDDFVTGETGVAGVSWPIFRWGGGKDDKYLAR--MGKNISVYETDTFSLID-KSLKVENVK--------DACG--SPIPLLALLFL
        D+ + +++R F+        G      V WPIF+W    DDKYLAR  +G++ISVYET + +L+D K++K++ V+        DA G  S   LLA    
Subjt:  DVRTRKVMRDFEGSFDDFVTGETGVAGVSWPIFRWGGGKDDKYLAR--MGKNISVYETDTFSLID-KSLKVENVK--------DACG--SPIPLLALLFL

Query:  EVGGGNQPARVS
        E+   NQPARV+
Subjt:  EVGGGNQPARVS

Q9C5Z1 Eukaryotic translation initiation factor 3 subunit B4.8e-3060.91Show/hide
Query:  RLVINYCDVRTRKVMRDFEGSFDDF-VTGETGVAGVSWPIFRWGGGKDDKYLARMGKN-ISVYETDTFSLID-KSLKVENVKDACGSPIPLLALLFL-EV
        ++ I   DVRT ++MRDF+GS D+F + G  GVAG SWP+FRW GGKDDKY A++ KN ISVYET+TFSLID KS+KV+NV D C SP   +  LF+ E 
Subjt:  RLVINYCDVRTRKVMRDFEGSFDDF-VTGETGVAGVSWPIFRWGGGKDDKYLARMGKN-ISVYETDTFSLID-KSLKVENVKDACGSPIPLLALLFL-EV

Query:  GGGNQPARVS
        GGGNQPA+V+
Subjt:  GGGNQPARVS

Arabidopsis top hitse value%identityAlignment
AT1G49015.1 DPP6 N-terminal domain-like protein1.1e-0539.44Show/hide
Query:  SWPIFRWGGGKDDKYLARMGKNISVYETDTFSLIDKSLKVENVKDACGSPI-PLLALLFLEVGGGNQPARV
        SWPI RW GGKDDKY A + KN +  +         ++  ++V     SP  P+L+LL  +V   NQP +V
Subjt:  SWPIFRWGGGKDDKYLARMGKNISVYETDTFSLIDKSLKVENVKDACGSPI-PLLALLFLEVGGGNQPARV

AT5G25780.1 eukaryotic translation initiation factor 3B-23.4e-3160.91Show/hide
Query:  RLVINYCDVRTRKVMRDFEGSFDDF-VTGETGVAGVSWPIFRWGGGKDDKYLARMGKN-ISVYETDTFSLID-KSLKVENVKDACGSPIPLLALLFL-EV
        ++ I   DVRT ++MRDF+GS D+F + G  GVAG SWP+FRW GGKDDKY A++ KN ISVYET+TFSLID KS+KV+NV D C SP   +  LF+ E 
Subjt:  RLVINYCDVRTRKVMRDFEGSFDDF-VTGETGVAGVSWPIFRWGGGKDDKYLARMGKN-ISVYETDTFSLID-KSLKVENVKDACGSPIPLLALLFL-EV

Query:  GGGNQPARVS
        GGGNQPA+V+
Subjt:  GGGNQPARVS

AT5G27640.1 translation initiation factor 3B13.4e-3160.91Show/hide
Query:  RLVINYCDVRTRKVMRDFEGSFDDF-VTGETGVAGVSWPIFRWGGGKDDKYLARMGKN-ISVYETDTFSLID-KSLKVENVKDACGSPIPLLALLFL-EV
        ++ I   DVRT ++MRDF+GS D+F + G  GVAG SWP+FRW GGKDDKY A++ KN ISVYET+TFSLID KS+KV+NV D C SP   +  LF+ E 
Subjt:  RLVINYCDVRTRKVMRDFEGSFDDF-VTGETGVAGVSWPIFRWGGGKDDKYLARMGKN-ISVYETDTFSLID-KSLKVENVKDACGSPIPLLALLFL-EV

Query:  GGGNQPARVS
        GGGNQPA+V+
Subjt:  GGGNQPARVS

AT5G27640.2 translation initiation factor 3B13.4e-3160.91Show/hide
Query:  RLVINYCDVRTRKVMRDFEGSFDDF-VTGETGVAGVSWPIFRWGGGKDDKYLARMGKN-ISVYETDTFSLID-KSLKVENVKDACGSPIPLLALLFL-EV
        ++ I   DVRT ++MRDF+GS D+F + G  GVAG SWP+FRW GGKDDKY A++ KN ISVYET+TFSLID KS+KV+NV D C SP   +  LF+ E 
Subjt:  RLVINYCDVRTRKVMRDFEGSFDDF-VTGETGVAGVSWPIFRWGGGKDDKYLARMGKN-ISVYETDTFSLID-KSLKVENVKDACGSPIPLLALLFL-EV

Query:  GGGNQPARVS
        GGGNQPA+V+
Subjt:  GGGNQPARVS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGATTAGTGATCAATTATTGTGATGTGAGAACTAGAAAAGTGATGAGAGATTTCGAGGGAAGTTTCGATGATTTTGTCACTGGAGAAACTGGTGTTGCAGGCGTATCTTG
GCCTATTTTTAGGTGGGGTGGTGGGAAAGATGATAAGTACTTAGCCAGGATGGGGAAAAATATCTCTGTCTACGAAACAGATACTTTCTCACTTATTGACAAATCTTTGA
AGGTTGAAAATGTAAAGGATGCCTGCGGGTCCCCCATACCACTTCTTGCACTCCTTTTTCTTGAAGTAGGTGGTGGGAACCAACCAGCTAGGGTAAGT
mRNA sequenceShow/hide mRNA sequence
AGATTAGTGATCAATTATTGTGATGTGAGAACTAGAAAAGTGATGAGAGATTTCGAGGGAAGTTTCGATGATTTTGTCACTGGAGAAACTGGTGTTGCAGGCGTATCTTG
GCCTATTTTTAGGTGGGGTGGTGGGAAAGATGATAAGTACTTAGCCAGGATGGGGAAAAATATCTCTGTCTACGAAACAGATACTTTCTCACTTATTGACAAATCTTTGA
AGGTTGAAAATGTAAAGGATGCCTGCGGGTCCCCCATACCACTTCTTGCACTCCTTTTTCTTGAAGTAGGTGGTGGGAACCAACCAGCTAGGGTAAGT
Protein sequenceShow/hide protein sequence
RLVINYCDVRTRKVMRDFEGSFDDFVTGETGVAGVSWPIFRWGGGKDDKYLARMGKNISVYETDTFSLIDKSLKVENVKDACGSPIPLLALLFLEVGGGNQPARVS