CuGenDBv2

Gene ID	MS006982
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Eukaryotic translation initiation factor 3 subunit B
Genome location	scaffold693:50070..50192
RNA-Seq Expression	MS006982
Synteny	MS006982
Gene Ontology terms	GO:0001732 - formation of cytoplasmic translation initiation complex (biological process) GO:0005852 - eukaryotic translation initiation factor 3 complex (cellular component) GO:0016282 - eukaryotic 43S preinitiation complex (cellular component) GO:0033290 - eukaryotic 48S preinitiation complex (cellular component) GO:0003743 - translation initiation factor activity (molecular function) GO:0031369 - translation initiation factor binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004139759.3 eukaryotic translation initiation factor 3 subunit B isoform X1 [Cucumis sativus]

6.0e-10

79.07

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Query:  ENLLQWLTDDKAHDQFVICSGSDTDVLWND--DLKPEPVYKRP
        ENL QWLTD+KA DQFVI SGSDT+V WND   LKPEPVYKRP
Subjt:  ENLLQWLTDDKAHDQFVICSGSDTDVLWND--DLKPEPVYKRP

XP_008447809.1 PREDICTED: eukaryotic translation initiation factor 3 subunit B-like isoform X1 [Cucumis melo]

6.0e-10

79.07

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Query:  ENLLQWLTDDKAHDQFVICSGSDTDVLWND--DLKPEPVYKRP
        ENL QWLTD+KA DQFVI SGSDT+V WND   LKPEPVYKRP
Subjt:  ENLLQWLTDDKAHDQFVICSGSDTDVLWND--DLKPEPVYKRP

XP_022157221.1 eukaryotic translation initiation factor 3 subunit B-like [Momordica charantia]

2.1e-10

81.4

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Query:  ENLLQWLTDDKAHDQFVICSGSDTDVLWND--DLKPEPVYKRP
        ENL QWLTDDKA DQFVI SGSDT+V WND   LKPEPVYKRP
Subjt:  ENLLQWLTDDKAHDQFVICSGSDTDVLWND--DLKPEPVYKRP

XP_022976910.1 eukaryotic translation initiation factor 3 subunit B-like [Cucurbita maxima]

6.0e-10

79.07

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Query:  ENLLQWLTDDKAHDQFVICSGSDTDVLWND--DLKPEPVYKRP
        ENL QWLTD+KA DQFVI SGSDT+V WND   LKPEPVYKRP
Subjt:  ENLLQWLTDDKAHDQFVICSGSDTDVLWND--DLKPEPVYKRP

XP_023535753.1 eukaryotic translation initiation factor 3 subunit B-like [Cucurbita pepo subsp. pepo]

6.0e-10

79.07

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Query:  ENLLQWLTDDKAHDQFVICSGSDTDVLWND--DLKPEPVYKRP
        ENL QWLTD+KA DQFVI SGSDT+V WND   LKPEPVYKRP
Subjt:  ENLLQWLTDDKAHDQFVICSGSDTDVLWND--DLKPEPVYKRP

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BIW9 Eukaryotic translation initiation factor 3 subunit B

2.9e-10

79.07

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Query:  ENLLQWLTDDKAHDQFVICSGSDTDVLWND--DLKPEPVYKRP
        ENL QWLTD+KA DQFVI SGSDT+V WND   LKPEPVYKRP
Subjt:  ENLLQWLTDDKAHDQFVICSGSDTDVLWND--DLKPEPVYKRP

A0A5D3DI02 Eukaryotic translation initiation factor 3 subunit B

2.9e-10

79.07

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Query:  ENLLQWLTDDKAHDQFVICSGSDTDVLWND--DLKPEPVYKRP
        ENL QWLTD+KA DQFVI SGSDT+V WND   LKPEPVYKRP
Subjt:  ENLLQWLTDDKAHDQFVICSGSDTDVLWND--DLKPEPVYKRP

A0A6J1DXB8 Eukaryotic translation initiation factor 3 subunit B

1.0e-10

81.4

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Query:  ENLLQWLTDDKAHDQFVICSGSDTDVLWND--DLKPEPVYKRP
        ENL QWLTDDKA DQFVI SGSDT+V WND   LKPEPVYKRP
Subjt:  ENLLQWLTDDKAHDQFVICSGSDTDVLWND--DLKPEPVYKRP

A0A6J1F2H0 Eukaryotic translation initiation factor 3 subunit B

2.9e-10

79.07

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Query:  ENLLQWLTDDKAHDQFVICSGSDTDVLWND--DLKPEPVYKRP
        ENL QWLTD+KA DQFVI SGSDT+V WND   LKPEPVYKRP
Subjt:  ENLLQWLTDDKAHDQFVICSGSDTDVLWND--DLKPEPVYKRP

A0A6J1IKS5 Eukaryotic translation initiation factor 3 subunit B

2.9e-10

79.07

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Query:  ENLLQWLTDDKAHDQFVICSGSDTDVLWND--DLKPEPVYKRP
        ENL QWLTD+KA DQFVI SGSDT+V WND   LKPEPVYKRP
Subjt:  ENLLQWLTDDKAHDQFVICSGSDTDVLWND--DLKPEPVYKRP

SwissProt top hits

e value

%identity

Alignment

P56821 Eukaryotic translation initiation factor 3 subunit B

7.3e-11

73.81

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Query:  ENLLQWLTDDKAHDQFVICSGSDTDVLWND--DLKPEPVYKR
        ENL QWLTD+KA DQFVI +G+DT+VLWND   LKPE VYKR
Subjt:  ENLLQWLTDDKAHDQFVICSGSDTDVLWND--DLKPEPVYKR

Q9C5Z1 Eukaryotic translation initiation factor 3 subunit B

2.4e-09

65.12

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Query:  ENLLQWLTDDKAHDQFVICSGSDTDVLWNDDLK--PEPVYKRP
        ENL +WLTD+KA DQ VI SG DT+V WND  +  PEPV+KRP
Subjt:  ENLLQWLTDDKAHDQFVICSGSDTDVLWNDDLK--PEPVYKRP

Arabidopsis top hits

e value

%identity

Alignment

AT5G25780.1 eukaryotic translation initiation factor 3B-2

4.9e-10

66.67

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Query:  ENLLQWLTDDKAHDQFVICSGSDTDVLWND--DLKPEPVYKR
        ENL +WLTDDKA DQ VI  G DT+V WND    KPEPV+KR
Subjt:  ENLLQWLTDDKAHDQFVICSGSDTDVLWND--DLKPEPVYKR

AT5G27640.1 translation initiation factor 3B1

1.7e-10

65.12

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Query:  ENLLQWLTDDKAHDQFVICSGSDTDVLWNDDLK--PEPVYKRP
        ENL +WLTD+KA DQ VI SG DT+V WND  +  PEPV+KRP
Subjt:  ENLLQWLTDDKAHDQFVICSGSDTDVLWNDDLK--PEPVYKRP

AT5G27640.2 translation initiation factor 3B1

1.7e-10

65.12

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Query:  ENLLQWLTDDKAHDQFVICSGSDTDVLWNDDLK--PEPVYKRP
        ENL +WLTD+KA DQ VI SG DT+V WND  +  PEPV+KRP
Subjt:  ENLLQWLTDDKAHDQFVICSGSDTDVLWNDDLK--PEPVYKRP

Sequences

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CDS sequence

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GAAAATCTTCTACAGTGGCTTACTGATGATAAAGCACATGATCAGTTTGTTATTTGTTCTGGTTCTGATACCGACGTCTTATGGAATGATGATTTGAAGCCCGAGCCTGT
TTACAAGCGTCCA

mRNA sequence

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GAAAATCTTCTACAGTGGCTTACTGATGATAAAGCACATGATCAGTTTGTTATTTGTTCTGGTTCTGATACCGACGTCTTATGGAATGATGATTTGAAGCCCGAGCCTGT
TTACAAGCGTCCA

Protein sequence

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ENLLQWLTDDKAHDQFVICSGSDTDVLWNDDLKPEPVYKRP

MS006982 (gene) of Bitter gourd (TR) v1 genome