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MS006992 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS006992
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold693:224605..224865
RNA-Seq ExpressionMS006992
SyntenyMS006992
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MBA0621507.1 hypothetical protein [Gossypium davidsonii]2.0e-0740.51Show/hide
Query:  WSPSVEGFVKLNVDAAYRATSSLVGLGFTVRDSLGRVLLSGVWPWQCVFEVDMAKALAVREGVLVAREAGFFQLQVEMD
        W P    +VKLN DAAY+A  +   LGF +R+  G V+ SG+     + +V +A+A+A  +G+L A+E GF  ++VE D
Subjt:  WSPSVEGFVKLNVDAAYRATSSLVGLGFTVRDSLGRVLLSGVWPWQCVFEVDMAKALAVREGVLVAREAGFFQLQVEMD

OMO68241.1 hypothetical protein CCACVL1_20027 [Corchorus capsularis]1.8e-0844.3Show/hide
Query:  WSPSVEGFVKLNVDAAYRATSSLVGLGFTVRDSLGRVLLSGVWPWQCVFEVDMAKALAVREGVLVAREAGFFQLQVEMD
        W+PS  G VK+NVDA++RA    +GLG  +RDS+G VL+  V     VF+    +A A+R G+L+A + GF   +VE D
Subjt:  WSPSVEGFVKLNVDAAYRATSSLVGLGFTVRDSLGRVLLSGVWPWQCVFEVDMAKALAVREGVLVAREAGFFQLQVEMD

XP_010688587.1 PREDICTED: uncharacterized protein LOC104902499 [Beta vulgaris subsp. vulgaris]1.6e-0746.84Show/hide
Query:  WSPSVEGFVKLNVDAAYRATSSLVGLGFTVRDSLGRVLLSGVWPWQCVFEVDMAKALAVREGVLVAREAGFFQLQVEMD
        W+    G +KLN D A       VGLG  +RD  G VL +   PWQ   EVD  +ALAV++G+ VA EAGF Q +VE D
Subjt:  WSPSVEGFVKLNVDAAYRATSSLVGLGFTVRDSLGRVLLSGVWPWQCVFEVDMAKALAVREGVLVAREAGFFQLQVEMD

XP_016694277.1 uncharacterized protein LOC107910863 [Gossypium hirsutum]3.5e-0743.04Show/hide
Query:  WSPSVEGFVKLNVDAAYRATSSLVGLGFTVRDSLGRVLLSGVWPWQCVFEVDMAKALAVREGVLVAREAGFFQLQVEMD
        W P  E +VKLN DAAY+  ++    GF +RD  G+V+ SGV     V +  MA+A+A  +G+L A+E GF  ++VE D
Subjt:  WSPSVEGFVKLNVDAAYRATSSLVGLGFTVRDSLGRVLLSGVWPWQCVFEVDMAKALAVREGVLVAREAGFFQLQVEMD

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]1.1e-0840.96Show/hide
Query:  RIKFWSPSVEGFVKLNVDAAYRATSSLVGLGFTVRDSLGRVLLSGVWPWQCVFEVDMAKALAVREGVLVAREAGFFQLQVEMD
        R+  W P     +K+NVDAA+R  S + G+G  +RDS G V L+ +       +VD  +  AV EG+L+A EAGF + Q+E D
Subjt:  RIKFWSPSVEGFVKLNVDAAYRATSSLVGLGFTVRDSLGRVLLSGVWPWQCVFEVDMAKALAVREGVLVAREAGFFQLQVEMD

TrEMBL top hitse value%identityAlignment
A0A1R3HD38 RNase H domain-containing protein8.9e-0944.3Show/hide
Query:  WSPSVEGFVKLNVDAAYRATSSLVGLGFTVRDSLGRVLLSGVWPWQCVFEVDMAKALAVREGVLVAREAGFFQLQVEMD
        W+PS  G VK+NVDA++RA    +GLG  +RDS+G VL+  V     VF+    +A A+R G+L+A + GF   +VE D
Subjt:  WSPSVEGFVKLNVDAAYRATSSLVGLGFTVRDSLGRVLLSGVWPWQCVFEVDMAKALAVREGVLVAREAGFFQLQVEMD

A0A1U8JVG6 uncharacterized protein LOC1079108631.7e-0743.04Show/hide
Query:  WSPSVEGFVKLNVDAAYRATSSLVGLGFTVRDSLGRVLLSGVWPWQCVFEVDMAKALAVREGVLVAREAGFFQLQVEMD
        W P  E +VKLN DAAY+  ++    GF +RD  G+V+ SGV     V +  MA+A+A  +G+L A+E GF  ++VE D
Subjt:  WSPSVEGFVKLNVDAAYRATSSLVGLGFTVRDSLGRVLLSGVWPWQCVFEVDMAKALAVREGVLVAREAGFFQLQVEMD

A0A6J1C467 uncharacterized protein LOC1110077752.2e-0739.53Show/hide
Query:  QANRIKFWSPSVEGFVKLNVDAAYRATSSLVGLGFTVRDSLGRVLLSGVWPWQCVFEVDMAKALAVREGVLVAREAGFFQLQVEMD
        +  R+  W P +  F K+NVDAA++  +   GL   +RDS   VLLS +     V +V +A+ LA +EGV +A EAG    Q+E D
Subjt:  QANRIKFWSPSVEGFVKLNVDAAYRATSSLVGLGFTVRDSLGRVLLSGVWPWQCVFEVDMAKALAVREGVLVAREAGFFQLQVEMD

A0A6J1DBJ7 uncharacterized protein LOC1110189735.2e-0940.96Show/hide
Query:  RIKFWSPSVEGFVKLNVDAAYRATSSLVGLGFTVRDSLGRVLLSGVWPWQCVFEVDMAKALAVREGVLVAREAGFFQLQVEMD
        R+  W P     +K+NVDAA+R  S + G+G  +RDS G V L+ +       +VD  +  AV EG+L+A EAGF + Q+E D
Subjt:  RIKFWSPSVEGFVKLNVDAAYRATSSLVGLGFTVRDSLGRVLLSGVWPWQCVFEVDMAKALAVREGVLVAREAGFFQLQVEMD

A0A7J8S5Z1 RNase H domain-containing protein9.8e-0840.51Show/hide
Query:  WSPSVEGFVKLNVDAAYRATSSLVGLGFTVRDSLGRVLLSGVWPWQCVFEVDMAKALAVREGVLVAREAGFFQLQVEMD
        W P    +VKLN DAAY+A  +   LGF +R+  G V+ SG+     + +V +A+A+A  +G+L A+E GF  ++VE D
Subjt:  WSPSVEGFVKLNVDAAYRATSSLVGLGFTVRDSLGRVLLSGVWPWQCVFEVDMAKALAVREGVLVAREAGFFQLQVEMD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G09775.1 BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT2G02650.1)6.5e-0434.92Show/hide
Query:  ANRIKFWSPSVEGFVKLNVDAAYRATSSLVGLGFTVRDSLGRVLLSGVWPWQCVFEVDMAKAL
        + R K WSP  EG++K N D+ Y          + +RDS G V+ SG    Q  +    A+AL
Subjt:  ANRIKFWSPSVEGFVKLNVDAAYRATSSLVGLGFTVRDSLGRVLLSGVWPWQCVFEVDMAKAL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTTCAGGCGAACCGCATCAAATTTTGGTCTCCATCGGTTGAGGGGTTTGTTAAACTTAATGTGGATGCTGCGTATAGGGCAACTTCTTCGTTGGTTGGGTTGGGGTTTAC
AGTTCGAGATTCTCTTGGACGAGTCTTGTTGTCGGGAGTGTGGCCTTGGCAGTGTGTTTTTGAGGTGGATATGGCTAAGGCGCTTGCAGTTCGAGAAGGAGTCCTCGTGG
CTAGAGAGGCTGGGTTTTTCCAGTTGCAGGTTGAAATGGAT
mRNA sequenceShow/hide mRNA sequence
GTTCAGGCGAACCGCATCAAATTTTGGTCTCCATCGGTTGAGGGGTTTGTTAAACTTAATGTGGATGCTGCGTATAGGGCAACTTCTTCGTTGGTTGGGTTGGGGTTTAC
AGTTCGAGATTCTCTTGGACGAGTCTTGTTGTCGGGAGTGTGGCCTTGGCAGTGTGTTTTTGAGGTGGATATGGCTAAGGCGCTTGCAGTTCGAGAAGGAGTCCTCGTGG
CTAGAGAGGCTGGGTTTTTCCAGTTGCAGGTTGAAATGGAT
Protein sequenceShow/hide protein sequence
VQANRIKFWSPSVEGFVKLNVDAAYRATSSLVGLGFTVRDSLGRVLLSGVWPWQCVFEVDMAKALAVREGVLVAREAGFFQLQVEMD