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MS007042 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS007042
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold430:36703..36939
RNA-Seq ExpressionMS007042
SyntenyMS007042
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]9.1e-2358.97Show/hide
Query:  RVGNVLASFEEADGDEANICWGSNMCVRIIIDIEKPLQRGIKLNIDGPVGGVWIPIQYKRLLDFCYHCGKVDHVLIDC
        R+GN +  FE+ + +  N CWGS + VR+  D+ KPL RGIKLN+DGP+GG WIPIQY+RL DF YHCG++DH+L DC
Subjt:  RVGNVLASFEEADGDEANICWGSNMCVRIIIDIEKPLQRGIKLNIDGPVGGVWIPIQYKRLLDFCYHCGKVDHVLIDC

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]2.9e-2155.7Show/hide
Query:  IRVGNVLASFEEADGDEANICWGSNMCVRIIIDIEKPLQRGIKLNIDGPVGGVWIPIQYKRLLDFCYHCGKVDHVLIDC
        IR+GN + +F + D +E    WG+++ +R++IDI KPL+RGIK+NIDGP+GG WIPIQY+RL DFCY CG + H   DC
Subjt:  IRVGNVLASFEEADGDEANICWGSNMCVRIIIDIEKPLQRGIKLNIDGPVGGVWIPIQYKRLLDFCYHCGKVDHVLIDC

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]1.4e-2370Show/hide
Query:  IRVGNVLASFEEADGDEANICWGSNMCVRIIIDIEKPLQRGIKLNIDGPVGGVWIPIQYKRLLDFCYHCG
        IR+GN L  FEEAD D+ N  WGSN+ VR+++DI KPL+RGIKLN+DGP+GG WIPIQY+RL DFCYHCG
Subjt:  IRVGNVLASFEEADGDEANICWGSNMCVRIIIDIEKPLQRGIKLNIDGPVGGVWIPIQYKRLLDFCYHCG

XP_035547259.1 uncharacterized protein LOC118348856 [Juglans regia]5.5e-1241.56Show/hide
Query:  VGNVLASFEEADGDEANICWGSNMCVRIIIDIEKPLQRGIKLNIDGPVGGVWIPIQYKRLLDFCYHCGKVDHVLIDC
        +GN +   EE DG+++ + WG  + +R+ ++I +PL RGI + + G  G VWI   Y+RL +FCY CGK+ H   DC
Subjt:  VGNVLASFEEADGDEANICWGSNMCVRIIIDIEKPLQRGIKLNIDGPVGGVWIPIQYKRLLDFCYHCGKVDHVLIDC

XP_042964753.1 uncharacterized protein LOC122298977 [Carya illinoinensis]3.2e-1240.51Show/hide
Query:  IRVGNVLASFEEADGDEANICWGSNMCVRIIIDIEKPLQRGIKLNIDGPVGGVWIPIQYKRLLDFCYHCGKVDHVLIDC
        +R+G+ +   +E D D+ N+ WGS++ V+I+ID++KPL RG   +++G    VW P+QY++L  FC+ CG++ H  +DC
Subjt:  IRVGNVLASFEEADGDEANICWGSNMCVRIIIDIEKPLQRGIKLNIDGPVGGVWIPIQYKRLLDFCYHCGKVDHVLIDC

TrEMBL top hitse value%identityAlignment
A0A2P5F2Z2 Zinc knuckle CX2CX4HX4C7.8e-1241.56Show/hide
Query:  VGNVLASFEEADGDEANICWGSNMCVRIIIDIEKPLQRGIKLNIDGPVGGVWIPIQYKRLLDFCYHCGKVDHVLIDC
        +GN    F E + D+   C G  + VR+I+DI KPL+RG K+ I      +W+  +Y RL DFC+ CGK+ H + DC
Subjt:  VGNVLASFEEADGDEANICWGSNMCVRIIIDIEKPLQRGIKLNIDGPVGGVWIPIQYKRLLDFCYHCGKVDHVLIDC

A0A6J1BSZ1 uncharacterized protein LOC1110054814.4e-2358.97Show/hide
Query:  RVGNVLASFEEADGDEANICWGSNMCVRIIIDIEKPLQRGIKLNIDGPVGGVWIPIQYKRLLDFCYHCGKVDHVLIDC
        R+GN +  FE+ + +  N CWGS + VR+  D+ KPL RGIKLN+DGP+GG WIPIQY+RL DF YHCG++DH+L DC
Subjt:  RVGNVLASFEEADGDEANICWGSNMCVRIIIDIEKPLQRGIKLNIDGPVGGVWIPIQYKRLLDFCYHCGKVDHVLIDC

A0A6J1DU55 uncharacterized protein LOC1110231351.4e-2155.7Show/hide
Query:  IRVGNVLASFEEADGDEANICWGSNMCVRIIIDIEKPLQRGIKLNIDGPVGGVWIPIQYKRLLDFCYHCGKVDHVLIDC
        IR+GN + +F + D +E    WG+++ +R++IDI KPL+RGIK+NIDGP+GG WIPIQY+RL DFCY CG + H   DC
Subjt:  IRVGNVLASFEEADGDEANICWGSNMCVRIIIDIEKPLQRGIKLNIDGPVGGVWIPIQYKRLLDFCYHCGKVDHVLIDC

A0A6J1DX30 uncharacterized protein LOC1110248746.8e-2470Show/hide
Query:  IRVGNVLASFEEADGDEANICWGSNMCVRIIIDIEKPLQRGIKLNIDGPVGGVWIPIQYKRLLDFCYHCG
        IR+GN L  FEEAD D+ N  WGSN+ VR+++DI KPL+RGIKLN+DGP+GG WIPIQY+RL DFCYHCG
Subjt:  IRVGNVLASFEEADGDEANICWGSNMCVRIIIDIEKPLQRGIKLNIDGPVGGVWIPIQYKRLLDFCYHCG

A0A6P9EID8 uncharacterized protein LOC1183488562.7e-1241.56Show/hide
Query:  VGNVLASFEEADGDEANICWGSNMCVRIIIDIEKPLQRGIKLNIDGPVGGVWIPIQYKRLLDFCYHCGKVDHVLIDC
        +GN +   EE DG+++ + WG  + +R+ ++I +PL RGI + + G  G VWI   Y+RL +FCY CGK+ H   DC
Subjt:  VGNVLASFEEADGDEANICWGSNMCVRIIIDIEKPLQRGIKLNIDGPVGGVWIPIQYKRLLDFCYHCGKVDHVLIDC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTAGGGTTGGCAATGTTTTAGCCAGCTTTGAAGAAGCTGATGGTGATGAAGCTAATATCTGTTGGGGTTCCAACATGTGCGTCAGGATTATTATTGATATTGAAAAACC
TCTCCAAAGAGGAATTAAGTTAAACATTGATGGCCCTGTGGGTGGTGTCTGGATCCCAATCCAATATAAACGACTCCTCGATTTCTGTTATCATTGTGGTAAAGTAGACC
ATGTTCTAATAGATTGT
mRNA sequenceShow/hide mRNA sequence
ATTAGGGTTGGCAATGTTTTAGCCAGCTTTGAAGAAGCTGATGGTGATGAAGCTAATATCTGTTGGGGTTCCAACATGTGCGTCAGGATTATTATTGATATTGAAAAACC
TCTCCAAAGAGGAATTAAGTTAAACATTGATGGCCCTGTGGGTGGTGTCTGGATCCCAATCCAATATAAACGACTCCTCGATTTCTGTTATCATTGTGGTAAAGTAGACC
ATGTTCTAATAGATTGT
Protein sequenceShow/hide protein sequence
IRVGNVLASFEEADGDEANICWGSNMCVRIIIDIEKPLQRGIKLNIDGPVGGVWIPIQYKRLLDFCYHCGKVDHVLIDC