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MS007050 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS007050
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold430:109550..109723
RNA-Seq ExpressionMS007050
SyntenyMS007050
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005856 - cytoskeleton (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]1.6e-1663.16Show/hide
Query:  GESLKVRIRYDIMKPLRRGIKINIDGPMGGVWIPLEYERLPEFCSFCGKIGHNAKDC
        G  L+VR+R+D+MKPL RGIK+N+DGPMGG WIP++YERLP+F   CG++ H  KDC
Subjt:  GESLKVRIRYDIMKPLRRGIKINIDGPMGGVWIPLEYERLPEFCSFCGKIGHNAKDC

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]4.5e-1154.24Show/hide
Query:  GESLKVRIRYDIMKPLRRGIKI-NIDGPMGGVWIPLEYERLPEFCSFCGKIGHNAKDCE
        G  ++VR++ D+ KPLRRGIK+ N DG    +W PL YE+LP+FC  CGKIGH+ ++CE
Subjt:  GESLKVRIRYDIMKPLRRGIKI-NIDGPMGGVWIPLEYERLPEFCSFCGKIGHNAKDCE

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]4.5e-1970.69Show/hide
Query:  GESLKVRIRYDIMKPLRRGIKINIDGPMGGVWIPLEYERLPEFCSFCGKIGHNAKDCE
        G SL++R+  DI KPLRRGIKINIDGPMGG WIP++YERLP+FC FCG IGH++ DC+
Subjt:  GESLKVRIRYDIMKPLRRGIKINIDGPMGGVWIPLEYERLPEFCSFCGKIGHNAKDCE

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]3.7e-1366.67Show/hide
Query:  GESLKVRIRYDIMKPLRRGIKINIDGPMGGVWIPLEYERLPEFCSFCG
        G +L+VR+  DI KPLRRGIK+N+DGP+GG WIP++YERLP+FC  CG
Subjt:  GESLKVRIRYDIMKPLRRGIKINIDGPMGGVWIPLEYERLPEFCSFCG

XP_035547259.1 uncharacterized protein LOC118348856 [Juglans regia]2.6e-1155.17Show/hide
Query:  GESLKVRIRYDIMKPLRRGIKINIDGPMGGVWIPLEYERLPEFCSFCGKIGHNAKDCE
        GE L++R+R +I +PL RGI + + G  G VWI   YERLP FC  CGK+GH  KDCE
Subjt:  GESLKVRIRYDIMKPLRRGIKINIDGPMGGVWIPLEYERLPEFCSFCGKIGHNAKDCE

TrEMBL top hitse value%identityAlignment
A0A6J1BSZ1 uncharacterized protein LOC1110054817.7e-1763.16Show/hide
Query:  GESLKVRIRYDIMKPLRRGIKINIDGPMGGVWIPLEYERLPEFCSFCGKIGHNAKDC
        G  L+VR+R+D+MKPL RGIK+N+DGPMGG WIP++YERLP+F   CG++ H  KDC
Subjt:  GESLKVRIRYDIMKPLRRGIKINIDGPMGGVWIPLEYERLPEFCSFCGKIGHNAKDC

A0A6J1D765 uncharacterized protein LOC1110179022.2e-1154.24Show/hide
Query:  GESLKVRIRYDIMKPLRRGIKI-NIDGPMGGVWIPLEYERLPEFCSFCGKIGHNAKDCE
        G  ++VR++ D+ KPLRRGIK+ N DG    +W PL YE+LP+FC  CGKIGH+ ++CE
Subjt:  GESLKVRIRYDIMKPLRRGIKI-NIDGPMGGVWIPLEYERLPEFCSFCGKIGHNAKDCE

A0A6J1DU55 uncharacterized protein LOC1110231352.2e-1970.69Show/hide
Query:  GESLKVRIRYDIMKPLRRGIKINIDGPMGGVWIPLEYERLPEFCSFCGKIGHNAKDCE
        G SL++R+  DI KPLRRGIKINIDGPMGG WIP++YERLP+FC FCG IGH++ DC+
Subjt:  GESLKVRIRYDIMKPLRRGIKINIDGPMGGVWIPLEYERLPEFCSFCGKIGHNAKDCE

A0A6J1DX30 uncharacterized protein LOC1110248741.8e-1366.67Show/hide
Query:  GESLKVRIRYDIMKPLRRGIKINIDGPMGGVWIPLEYERLPEFCSFCG
        G +L+VR+  DI KPLRRGIK+N+DGP+GG WIP++YERLP+FC  CG
Subjt:  GESLKVRIRYDIMKPLRRGIKINIDGPMGGVWIPLEYERLPEFCSFCG

A0A6P9EID8 uncharacterized protein LOC1183488561.3e-1155.17Show/hide
Query:  GESLKVRIRYDIMKPLRRGIKINIDGPMGGVWIPLEYERLPEFCSFCGKIGHNAKDCE
        GE L++R+R +I +PL RGI + + G  G VWI   YERLP FC  CGK+GH  KDCE
Subjt:  GESLKVRIRYDIMKPLRRGIKINIDGPMGGVWIPLEYERLPEFCSFCGKIGHNAKDCE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGTGAAAGTCTCAAGGTTAGGATAAGATATGATATCATGAAGCCTCTAAGGAGAGGGATCAAAATAAACATTGATGGACCCATGGGTGGCGTTTGGATCCCTTTGGAGTA
TGAGCGACTGCCGGAATTCTGTTCCTTTTGTGGAAAAATTGGGCACAACGCCAAAGATTGTGAA
mRNA sequenceShow/hide mRNA sequence
GGTGAAAGTCTCAAGGTTAGGATAAGATATGATATCATGAAGCCTCTAAGGAGAGGGATCAAAATAAACATTGATGGACCCATGGGTGGCGTTTGGATCCCTTTGGAGTA
TGAGCGACTGCCGGAATTCTGTTCCTTTTGTGGAAAAATTGGGCACAACGCCAAAGATTGTGAA
Protein sequenceShow/hide protein sequence
GESLKVRIRYDIMKPLRRGIKINIDGPMGGVWIPLEYERLPEFCSFCGKIGHNAKDCE