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MS007051 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS007051
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold430:113945..114285
RNA-Seq ExpressionMS007051
SyntenyMS007051
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RCV11510.1 hypothetical protein SETIT_2G191600v2 [Setaria italica]9.7e-1034.95Show/hide
Query:  WVPPPAEWVKLNVDAACKSEISRTGIGVIGRNCGGKFLALAK-NFDAQLDPVVAELSAIREGLYLASQLNFSLVQIESDCLQAIELISGNSECWLETGTL
        W PPP  WV +NVDAA  +E +R GIG++ R+  G FLA  +   +   +P VAE +A+R  ++  S L ++ V + SDCL  ++ +    +   +   L
Subjt:  WVPPPAEWVKLNVDAACKSEISRTGIGVIGRNCGGKFLALAK-NFDAQLDPVVAELSAIREGLYLASQLNFSLVQIESDCLQAIELISGNSECWLETGTL

Query:  VDD
        + D
Subjt:  VDD

XP_022142956.1 uncharacterized protein LOC111012950 [Momordica charantia]1.0e-1143.75Show/hide
Query:  WVKLNVDAACKSEISRTGIGVIGRNCGGKFLALA-KNFDAQLDPVVAELSAIREGLYLASQLNFSLVQIESDCLQAIELISGNSECWLETGTLVDD
        W+K+NVD ACK    RT IG++ RN  G+ LA A +  +A  DP++AE  A+ EGL LA  LN   VQ ESD LQ I L++ +   W  +   ++D
Subjt:  WVKLNVDAACKSEISRTGIGVIGRNCGGKFLALA-KNFDAQLDPVVAELSAIREGLYLASQLNFSLVQIESDCLQAIELISGNSECWLETGTLVDD

XP_022154440.1 uncharacterized protein LOC111021711 [Momordica charantia]1.2e-1241.51Show/hide
Query:  VSVWVPPPAEWVKLNVDAACKSEISRTGIGVIGRNCGGKFL-ALAKNFDAQLDPVVAELSAIREGLYLASQLNFSLVQIESDCLQAIELISGNSECWLET
        V+ W PP  +WVK+NVD ACK   SRTGIGV+ +N  G+ + A+ +  D   +P+  E  AI EGL+L   L+   VQ++SD   +I LIS   +   + 
Subjt:  VSVWVPPPAEWVKLNVDAACKSEISRTGIGVIGRNCGGKFL-ALAKNFDAQLDPVVAELSAIREGLYLASQLNFSLVQIESDCLQAIELISGNSECWLET

Query:  GTLVDD
           VDD
Subjt:  GTLVDD

XP_039780864.1 uncharacterized protein LOC120648195 [Panicum virgatum]9.7e-1044.05Show/hide
Query:  WVPPPAEWVKLNVDAACKSEISRTGIGVIGRNCGGKFL-ALAKNFDAQLDPVVAELSAIREGLYLASQLNFSLVQIESDCLQAI
        W+PPP ++VK+NVDAA     ++  +  + R+  G FL A    F    DP   E+ A REGL LAS L F  V++ SDCL AI
Subjt:  WVPPPAEWVKLNVDAACKSEISRTGIGVIGRNCGGKFL-ALAKNFDAQLDPVVAELSAIREGLYLASQLNFSLVQIESDCLQAI

XP_042974792.1 uncharacterized protein LOC122306430 [Carya illinoinensis]7.4e-1036.19Show/hide
Query:  SVWVPPPAEWVKLNVDAACKSEISRTGIGVIGRNCGGKFLA-LAKNFDAQLDPVVAELSAIREGLYLASQLNFSLVQIESDCLQAIELISGNSECWLETG
        S W PP  + +K+N DAA K++  R+GIGV+ R+  G+ +A L        D +VAE+ A+   + L ++LNF  VQ E D L  +  ++ + ECW   G
Subjt:  SVWVPPPAEWVKLNVDAACKSEISRTGIGVIGRNCGGKFLA-LAKNFDAQLDPVVAELSAIREGLYLASQLNFSLVQIESDCLQAIELISGNSECWLETG

Query:  TLVDD
         +++D
Subjt:  TLVDD

TrEMBL top hitse value%identityAlignment
A0A2P6QSB8 Putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein5.2e-0936.27Show/hide
Query:  WVPPPAEWVKLNVDAACKSEISRTGIGVIGRNCGGKFL-ALAKNFDAQLDPVVAELSAIREGLYLASQLNFSLVQIESDCLQAIELISGNSECWLETGTL
        WVPP    +KLN DA+  +   + GIG I RN  G+ + A+ +    +L P  AEL  + +GL  A    +S +++E+DCL+A+ L++G  EC  + G +
Subjt:  WVPPPAEWVKLNVDAACKSEISRTGIGVIGRNCGGKFL-ALAKNFDAQLDPVVAELSAIREGLYLASQLNFSLVQIESDCLQAIELISGNSECWLETGTL

Query:  VD
        V+
Subjt:  VD

A0A6J1CNR4 uncharacterized protein LOC1110129505.0e-1243.75Show/hide
Query:  WVKLNVDAACKSEISRTGIGVIGRNCGGKFLALA-KNFDAQLDPVVAELSAIREGLYLASQLNFSLVQIESDCLQAIELISGNSECWLETGTLVDD
        W+K+NVD ACK    RT IG++ RN  G+ LA A +  +A  DP++AE  A+ EGL LA  LN   VQ ESD LQ I L++ +   W  +   ++D
Subjt:  WVKLNVDAACKSEISRTGIGVIGRNCGGKFLALA-KNFDAQLDPVVAELSAIREGLYLASQLNFSLVQIESDCLQAIELISGNSECWLETGTLVDD

A0A6J1DJL6 uncharacterized protein LOC1110217115.9e-1341.51Show/hide
Query:  VSVWVPPPAEWVKLNVDAACKSEISRTGIGVIGRNCGGKFL-ALAKNFDAQLDPVVAELSAIREGLYLASQLNFSLVQIESDCLQAIELISGNSECWLET
        V+ W PP  +WVK+NVD ACK   SRTGIGV+ +N  G+ + A+ +  D   +P+  E  AI EGL+L   L+   VQ++SD   +I LIS   +   + 
Subjt:  VSVWVPPPAEWVKLNVDAACKSEISRTGIGVIGRNCGGKFL-ALAKNFDAQLDPVVAELSAIREGLYLASQLNFSLVQIESDCLQAIELISGNSECWLET

Query:  GTLVDD
           VDD
Subjt:  GTLVDD

A0A6P6W197 uncharacterized protein LOC1137289576.1e-1038.64Show/hide
Query:  WVPPPAEWVKLNVDAACKSEISRTGIGVIGRNCGGKFL-ALAKNFDAQLDPVVAELSAIREGLYLASQLNFSLVQIESDCLQAIELIS
        W+P P   +K+N DAA    I RTGIGV+ RN  GK + A A+      +P + E S+IR G+ +A + N+  V+ +SDC + +++I+
Subjt:  WVPPPAEWVKLNVDAACKSEISRTGIGVIGRNCGGKFL-ALAKNFDAQLDPVVAELSAIREGLYLASQLNFSLVQIESDCLQAIELIS

K4A0B9 RNase H domain-containing protein4.7e-1034.95Show/hide
Query:  WVPPPAEWVKLNVDAACKSEISRTGIGVIGRNCGGKFLALAK-NFDAQLDPVVAELSAIREGLYLASQLNFSLVQIESDCLQAIELISGNSECWLETGTL
        W PPP  WV +NVDAA  +E +R GIG++ R+  G FLA  +   +   +P VAE +A+R  ++  S L ++ V + SDCL  ++ +    +   +   L
Subjt:  WVPPPAEWVKLNVDAACKSEISRTGIGVIGRNCGGKFLALAK-NFDAQLDPVVAELSAIREGLYLASQLNFSLVQIESDCLQAIELISGNSECWLETGTL

Query:  VDD
        + D
Subjt:  VDD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CAGTTATCCAGTTTTCGAACTTTTGTCTCAGTTTGGGTTCCTCCCCCCGCTGAATGGGTTAAGCTCAATGTTGATGCGGCGTGCAAATCTGAAATTTCTCGTACCGGTAT
CGGAGTGATTGGTCGAAATTGTGGGGGAAAGTTTTTGGCTCTGGCCAAAAATTTCGATGCGCAACTTGACCCTGTAGTAGCAGAACTTTCAGCCATTCGAGAAGGTCTTT
ATCTTGCTTCTCAATTGAATTTCAGTTTGGTACAGATAGAATCGGATTGCTTACAAGCAATTGAGCTAATTTCTGGAAACAGTGAATGTTGGCTGGAAACAGGTACTTTG
GTTGACGAT
mRNA sequenceShow/hide mRNA sequence
CAGTTATCCAGTTTTCGAACTTTTGTCTCAGTTTGGGTTCCTCCCCCCGCTGAATGGGTTAAGCTCAATGTTGATGCGGCGTGCAAATCTGAAATTTCTCGTACCGGTAT
CGGAGTGATTGGTCGAAATTGTGGGGGAAAGTTTTTGGCTCTGGCCAAAAATTTCGATGCGCAACTTGACCCTGTAGTAGCAGAACTTTCAGCCATTCGAGAAGGTCTTT
ATCTTGCTTCTCAATTGAATTTCAGTTTGGTACAGATAGAATCGGATTGCTTACAAGCAATTGAGCTAATTTCTGGAAACAGTGAATGTTGGCTGGAAACAGGTACTTTG
GTTGACGAT
Protein sequenceShow/hide protein sequence
QLSSFRTFVSVWVPPPAEWVKLNVDAACKSEISRTGIGVIGRNCGGKFLALAKNFDAQLDPVVAELSAIREGLYLASQLNFSLVQIESDCLQAIELISGNSECWLETGTL
VDD